Wall clock time and date at job start Tue Mar 31 2020 06:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.46117 * 2 1 4 4 C 1.53030 * 109.45308 * 240.02495 * 2 1 3 5 5 C 1.53617 * 109.24441 * 178.49975 * 4 2 1 6 6 N 1.46933 * 108.54509 * 54.85901 * 5 4 2 7 7 C 1.34776 * 120.63391 * 126.36873 * 6 5 4 8 8 O 1.21277 * 119.99864 * 174.15082 * 7 6 5 9 9 C 1.50702 * 119.99758 * 354.14900 * 7 6 5 10 10 C 1.52992 * 109.46881 * 179.97438 * 9 7 6 11 11 C 1.53004 * 109.47203 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47258 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.47015 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99863 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99999 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99900 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00143 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.46916 * 89.99967 * 17 15 13 19 19 H 1.48505 * 109.47056 * 209.99966 * 17 15 13 20 20 H 1.48495 * 109.46824 * 329.99943 * 17 15 13 21 21 C 1.46929 * 118.73427 * 306.09430 * 6 5 4 22 22 H 1.09006 * 109.58718 * 294.07326 * 21 6 5 23 23 C 1.53001 * 109.58459 * 173.78856 * 21 6 5 24 24 N 1.46895 * 109.46894 * 181.79300 * 23 21 6 25 25 C 1.53044 * 109.45666 * 119.96526 * 2 1 3 26 26 H 1.08995 * 109.47525 * 300.03610 * 1 2 3 27 27 H 1.09002 * 109.47013 * 60.03268 * 1 2 3 28 28 H 1.09003 * 109.47469 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.50280 * 298.57658 * 4 2 1 30 30 H 1.09004 * 109.49781 * 58.63709 * 4 2 1 31 31 H 1.09006 * 109.74126 * 295.12027 * 5 4 2 32 32 H 1.09004 * 109.66732 * 174.55043 * 5 4 2 33 33 H 1.09002 * 109.47029 * 60.00213 * 9 7 6 34 34 H 1.08998 * 109.47205 * 300.00169 * 9 7 6 35 35 H 1.09002 * 109.46910 * 60.00391 * 10 9 7 36 36 H 1.08998 * 109.47544 * 300.00213 * 10 9 7 37 37 H 1.09002 * 109.46774 * 60.00423 * 11 10 9 38 38 H 1.08998 * 109.47139 * 300.00577 * 11 10 9 39 39 H 1.09010 * 109.46638 * 300.00213 * 12 11 10 40 40 H 1.08992 * 109.47137 * 60.00307 * 12 11 10 41 41 H 0.97000 * 120.00223 * 179.97438 * 16 15 13 42 42 H 1.09004 * 109.46965 * 301.78868 * 23 21 6 43 43 H 1.08995 * 109.46824 * 61.79346 * 23 21 6 44 44 H 1.00898 * 111.00175 * 184.95578 * 24 23 21 45 45 H 1.00908 * 110.99794 * 308.90622 * 24 23 21 46 46 H 1.09000 * 109.49709 * 61.42079 * 25 2 1 47 47 H 1.09002 * 109.52553 * 301.33965 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0396 -0.7209 -1.2499 5 6 3.5753 -0.6853 -1.2642 6 7 4.0676 -1.2494 0.0001 7 6 4.9616 -2.2579 0.0001 8 8 5.4404 -2.6438 1.0455 9 6 5.3664 -2.9061 -1.2988 10 6 6.3850 -4.0132 -1.0206 11 6 6.7954 -4.6718 -2.3392 12 6 7.8137 -5.7794 -2.0609 13 6 8.2184 -6.4275 -3.3598 14 1 7.7917 -6.0841 -4.2906 15 6 9.1326 -7.4596 -3.3597 16 7 9.6518 -7.8781 -2.2262 17 14 9.6337 -8.2636 -4.9697 18 1 10.8095 -7.5528 -5.5329 19 1 9.9855 -9.6854 -4.7245 20 1 8.5045 -8.1918 -5.9313 21 6 3.5713 -0.6889 1.2643 22 1 3.9144 0.3406 1.3673 23 6 4.0939 -1.5233 2.4355 24 7 3.5615 -0.9866 3.6950 25 6 2.0398 -0.7208 1.2502 26 1 -0.3634 0.5144 0.8896 27 1 -0.3633 0.5133 -0.8903 28 1 -0.3634 -1.0277 0.0005 29 1 1.6974 -1.7558 -1.2381 30 1 1.6565 -0.2213 -2.1398 31 1 3.9188 0.3444 -1.3632 32 1 3.9483 -1.2789 -2.0989 33 1 5.8129 -2.1584 -1.9543 34 1 4.4872 -3.3335 -1.7810 35 1 5.9388 -4.7610 -0.3649 36 1 7.2640 -3.5854 -0.5386 37 1 7.2415 -3.9242 -2.9952 38 1 5.9162 -5.0996 -2.8208 39 1 8.6930 -5.3517 -1.5791 40 1 7.3673 -6.5268 -1.4051 41 1 10.2946 -8.6045 -2.2261 42 1 3.7720 -2.5579 2.3166 43 1 5.1829 -1.4813 2.4540 44 1 3.9552 -1.4693 4.4888 45 1 3.7214 0.0075 3.7607 46 1 1.6975 -1.7556 1.2385 47 1 1.6573 -0.2211 2.1402 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001579423248.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:44 Heat of formation + Delta-G solvation = -59.925583 kcal Electronic energy + Delta-G solvation = -22713.198401 eV Core-core repulsion = 19508.765717 eV Total energy + Delta-G solvation = -3204.432683 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.71648 -37.94088 -35.39314 -34.62139 -34.10808 -32.57364 -30.81363 -29.74054 -28.33619 -25.88620 -24.99708 -23.64972 -22.68802 -21.32136 -20.50065 -19.95338 -19.01810 -16.89321 -16.48282 -16.15110 -15.85033 -15.31709 -15.00880 -14.56580 -14.51687 -14.41080 -14.07975 -13.86638 -13.41976 -13.37939 -12.76471 -12.55898 -12.37240 -12.18308 -12.02592 -11.93079 -11.65105 -11.55270 -11.27471 -11.21532 -10.97474 -10.77510 -10.62483 -10.52508 -10.48152 -10.36370 -9.61671 -9.60017 -9.21969 -8.98005 -8.73536 -8.41112 -8.29792 -5.94557 -3.97055 2.67950 2.84183 3.34377 3.40366 3.43612 4.31789 4.41686 4.44459 4.49600 4.61437 4.70880 4.82464 4.97352 5.03735 5.11146 5.26241 5.30508 5.34626 5.37001 5.40871 5.42563 5.47763 5.52935 5.69432 5.75466 5.81726 5.88333 5.89105 5.97782 6.04747 6.14928 6.18052 6.31116 6.50700 6.57702 6.85307 6.97995 7.02590 7.20877 7.28093 7.36545 7.74939 7.91122 8.06959 8.24746 8.48822 9.10714 9.66559 11.16814 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027141 B = 0.002901 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.408815 B = 9648.680440 C =10431.618448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 H 0.068 0.932 4 C -0.132 4.132 5 C 0.107 3.893 6 N -0.616 5.616 7 C 0.515 3.485 8 O -0.531 6.531 9 C -0.139 4.139 10 C -0.102 4.102 11 C -0.110 4.110 12 C 0.020 3.980 13 C -0.520 4.520 14 H 0.054 0.946 15 C 0.055 3.945 16 N -0.896 5.896 17 Si 0.891 3.109 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 C 0.148 3.852 22 H 0.063 0.937 23 C 0.065 3.935 24 N -0.858 5.858 25 C -0.113 4.113 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.046 0.954 38 H 0.046 0.954 39 H 0.015 0.985 40 H 0.016 0.984 41 H 0.260 0.740 42 H 0.079 0.921 43 H 0.064 0.936 44 H 0.344 0.656 45 H 0.332 0.668 46 H 0.065 0.935 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.721 19.772 5.670 27.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 H 0.087 0.913 4 C -0.170 4.170 5 C -0.016 4.016 6 N -0.351 5.351 7 C 0.305 3.695 8 O -0.407 6.407 9 C -0.179 4.179 10 C -0.140 4.140 11 C -0.148 4.148 12 C -0.017 4.017 13 C -0.558 4.558 14 H 0.072 0.928 15 C -0.146 4.146 16 N -0.535 5.535 17 Si 0.719 3.281 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.199 1.199 21 C 0.044 3.956 22 H 0.081 0.919 23 C -0.065 4.065 24 N -0.390 5.390 25 C -0.152 4.152 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.110 0.890 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.034 0.966 40 H 0.034 0.966 41 H 0.070 0.930 42 H 0.097 0.903 43 H 0.082 0.918 44 H 0.156 0.844 45 H 0.143 0.857 46 H 0.084 0.916 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -18.033 19.154 6.008 26.985 hybrid contribution 1.235 -0.154 -0.778 1.468 sum -16.798 19.000 5.230 25.895 Atomic orbital electron populations 1.21805 0.94971 1.01924 1.01572 1.21166 0.95812 0.99399 0.95004 0.91327 1.22082 0.94954 1.01709 0.98234 1.21853 0.94342 0.99292 0.86090 1.48261 1.44161 1.36070 1.06654 1.21103 0.77635 0.78662 0.92145 1.90695 1.54047 1.62977 1.33015 1.21849 1.01651 0.99827 0.94569 1.21450 0.97298 0.95861 0.99431 1.21647 0.99812 0.98839 0.94459 1.19092 0.93354 0.92473 0.96775 1.21287 1.24114 1.16990 0.93443 0.92765 1.25043 0.96369 0.97030 0.96139 1.69975 1.30045 1.28149 1.25336 0.86612 0.78839 0.78631 0.84013 1.20714 1.21252 1.19910 1.21231 0.94154 0.96679 0.83518 0.91905 1.22443 0.98631 0.98356 0.87037 1.58843 1.66987 1.08203 1.04925 1.21922 0.94074 1.01475 0.97702 0.92634 0.92759 0.92648 0.91213 0.90738 0.91413 0.89050 0.89344 0.89212 0.91852 0.91878 0.93532 0.93516 0.96638 0.96605 0.93049 0.90256 0.91825 0.84384 0.85710 0.91630 0.90021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.19 37.16 0.34 -0.59 16 2 C -0.10 -0.68 2.68 -90.58 -0.24 -0.92 16 3 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 4 C -0.13 -0.93 5.38 -26.40 -0.14 -1.07 16 5 C 0.11 0.86 6.38 -3.49 -0.02 0.84 16 6 N -0.62 -6.75 2.97 -164.95 -0.49 -7.24 16 7 C 0.51 7.25 7.53 -10.98 -0.08 7.17 16 8 O -0.53 -9.17 11.53 5.56 0.06 -9.10 16 9 C -0.14 -1.89 4.06 -27.89 -0.11 -2.00 16 10 C -0.10 -1.84 4.50 -26.73 -0.12 -1.96 16 11 C -0.11 -2.28 5.15 -26.73 -0.14 -2.42 16 12 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 13 C -0.52 -15.08 9.11 -34.44 -0.31 -15.39 16 14 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 15 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -27.69 13.29 55.43 0.74 -26.96 16 17 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 20 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 21 C 0.15 1.52 3.09 -67.60 -0.21 1.31 16 22 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 23 C 0.06 0.78 4.68 -3.83 -0.02 0.76 16 24 N -0.86 -8.11 8.97 -10.37 -0.09 -8.21 16 25 C -0.11 -1.01 4.40 -26.61 -0.12 -1.12 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.09 0.68 5.93 -51.93 -0.31 0.37 16 33 H 0.09 1.04 7.70 -51.93 -0.40 0.64 16 34 H 0.09 1.08 7.93 -51.93 -0.41 0.67 16 35 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 36 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 37 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.02 0.44 8.14 -51.92 -0.42 0.01 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 42 H 0.08 1.17 7.24 -51.93 -0.38 0.79 16 43 H 0.06 0.92 6.24 -51.93 -0.32 0.59 16 44 H 0.34 3.01 9.08 -39.29 -0.36 2.65 16 45 H 0.33 2.57 8.93 -39.29 -0.35 2.22 16 46 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.08 0.71 7.77 -51.93 -0.40 0.31 16 LS Contribution 363.11 15.07 5.47 5.47 Total: -1.00 -32.56 363.11 -9.55 -42.11 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -8.81 Total: 0.44 kcal Atomic # 6 Polarization: -12.08 SS G_CDS: -1.41 Total: -13.49 kcal Atomic # 7 Polarization: -42.56 SS G_CDS: 0.15 Total: -42.40 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.06 Total: -9.10 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.56 -9.55 -42.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579423248.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.817 kcal (2) G-P(sol) polarization free energy of solvation -32.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds