Wall clock time and date at job start Tue Mar 31 2020 06:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.53002 * 109.47233 * 240.00343 * 2 1 3 5 5 N 1.46503 * 109.46922 * 295.00015 * 4 2 1 6 6 C 1.46496 * 120.00346 * 89.99542 * 5 4 2 7 7 C 1.50700 * 109.46769 * 90.00028 * 6 5 4 8 8 H 1.08000 * 119.99901 * 0.02562 * 7 6 5 9 9 C 1.37881 * 119.99799 * 180.02562 * 7 6 5 10 10 N 1.31511 * 120.00165 * 359.97438 * 9 7 6 11 11 Si 1.86806 * 119.99934 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47183 * 59.99819 * 11 9 7 13 13 H 1.48496 * 109.46878 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.46885 * 299.99819 * 11 9 7 15 15 C 1.34779 * 119.99689 * 270.00230 * 5 4 2 16 16 O 1.21276 * 119.99935 * 180.02562 * 15 5 4 17 17 C 1.50702 * 120.00215 * 359.97438 * 15 5 4 18 18 N 1.46894 * 109.47354 * 180.02562 * 17 15 5 19 19 C 1.47842 * 111.00199 * 290.84478 * 18 17 15 20 20 C 1.54911 * 104.79646 * 213.63273 * 19 18 17 21 21 C 1.55140 * 101.65144 * 37.07242 * 20 19 18 22 22 H 1.08999 * 110.70895 * 82.72307 * 21 20 19 23 23 C 1.52992 * 110.70514 * 205.96235 * 21 20 19 24 24 C 1.47441 * 110.99996 * 170.00109 * 18 17 15 25 25 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 26 26 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 28 28 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 29 29 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 30 30 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 31 31 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.47059 * 54.99596 * 4 2 1 33 33 H 1.08996 * 109.47073 * 174.99688 * 4 2 1 34 34 H 1.09001 * 109.47445 * 210.00035 * 6 5 4 35 35 H 1.08996 * 109.47286 * 330.00388 * 6 5 4 36 36 H 0.97002 * 120.00154 * 180.02562 * 10 9 7 37 37 H 1.09009 * 109.47193 * 300.00759 * 17 15 5 38 38 H 1.09001 * 109.46542 * 60.00082 * 17 15 5 39 39 H 1.08999 * 110.37694 * 332.46687 * 19 18 17 40 40 H 1.08998 * 110.37046 * 94.80495 * 19 18 17 41 41 H 1.08994 * 110.99060 * 278.98283 * 20 19 18 42 42 H 1.09000 * 111.01882 * 155.17779 * 20 19 18 43 43 H 1.09008 * 109.47338 * 173.59845 * 23 21 20 44 44 H 1.09001 * 109.47214 * 293.59464 * 23 21 20 45 45 H 1.08999 * 109.47329 * 53.60107 * 23 21 20 46 46 H 1.09001 * 109.88818 * 242.66730 * 24 18 17 47 47 H 1.09002 * 109.89191 * 3.69068 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.6525 -2.1328 -1.1907 6 6 0.3746 -2.5659 -1.7613 7 6 0.5716 -2.9407 -3.2075 8 1 1.5509 -2.8644 -3.6566 9 6 -0.4983 -3.3812 -3.9575 10 7 -1.6906 -3.4746 -3.4105 11 14 -0.2539 -3.8465 -5.7501 12 1 0.7304 -4.9544 -5.8442 13 1 -1.5495 -4.2842 -6.3288 14 1 0.2514 -2.6701 -6.5023 15 6 2.4715 -3.0330 -0.6116 16 8 2.1510 -4.2016 -0.5635 17 6 3.7863 -2.5876 -0.0250 18 7 4.4881 -3.7474 0.5409 19 6 3.7934 -4.2514 1.7447 20 6 4.9252 -4.7712 2.6659 21 6 6.0439 -3.7281 2.4070 22 1 5.8897 -2.8380 3.0170 23 6 7.4224 -4.3359 2.6733 24 6 5.8727 -3.3992 0.9090 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 3.1299 1.4426 -0.0005 32 1 1.6054 -0.2617 -2.1370 33 1 3.1263 -0.6442 -1.2952 34 1 0.0043 -3.4298 -1.2092 35 1 -0.3484 -1.7532 -1.6919 36 1 -2.4433 -3.7848 -3.9380 37 1 4.3992 -2.1381 -0.8064 38 1 3.6038 -1.8541 0.7604 39 1 3.2469 -3.4447 2.2332 40 1 3.1165 -5.0636 1.4799 41 1 5.2450 -5.7692 2.3664 42 1 4.6150 -4.7600 3.7108 43 1 8.1956 -3.6266 2.3778 44 1 7.5218 -4.5600 3.7354 45 1 7.5323 -5.2542 2.0963 46 1 6.5731 -3.9888 0.3175 47 1 6.0459 -2.3367 0.7380 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001625794779.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:15 Heat of formation + Delta-G solvation = -44.143298 kcal Electronic energy + Delta-G solvation = -23566.734201 eV Core-core repulsion = 20362.985888 eV Total energy + Delta-G solvation = -3203.748312 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.67760 -38.34007 -36.23656 -33.60993 -33.11342 -32.22379 -29.84005 -28.40441 -26.90007 -26.77751 -25.42362 -24.71369 -22.49165 -21.00521 -20.24328 -20.17920 -18.34788 -16.54738 -16.41774 -16.14423 -15.21445 -14.98383 -14.67148 -14.47594 -14.19023 -13.76152 -13.66572 -13.34016 -13.03700 -13.00103 -12.55446 -12.39535 -12.08047 -12.02556 -11.85237 -11.76748 -11.47028 -11.28872 -11.21539 -10.95884 -10.90928 -10.88070 -10.79795 -10.66080 -10.57350 -10.44599 -10.23099 -10.06240 -9.53469 -8.78705 -8.36583 -8.05527 -7.53561 -5.98669 -4.02551 3.35620 3.39879 3.42868 3.54396 3.78133 4.29134 4.49017 4.54833 4.68519 4.78427 5.02910 5.12792 5.18776 5.30897 5.35189 5.35897 5.37878 5.39806 5.49066 5.54268 5.58929 5.63435 5.73463 5.83411 5.83973 5.86199 5.89930 5.93696 6.04179 6.10161 6.16889 6.19705 6.27434 6.31088 6.36829 6.56248 6.70421 7.03491 7.13663 7.25387 7.51027 7.64926 7.98676 8.31309 8.52489 8.97681 9.23113 9.62316 11.09125 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015346 B = 0.004886 C = 0.004082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.128220 B = 5729.728210 C = 6857.438132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.113 4.113 3 C -0.143 4.143 4 C 0.116 3.884 5 N -0.598 5.598 6 C 0.245 3.755 7 C -0.524 4.524 8 H 0.056 0.944 9 C 0.061 3.939 10 N -0.896 5.896 11 Si 0.896 3.104 12 H -0.276 1.276 13 H -0.287 1.287 14 H -0.278 1.278 15 C 0.506 3.494 16 O -0.523 6.523 17 C 0.033 3.967 18 N -0.510 5.510 19 C 0.049 3.951 20 C -0.126 4.126 21 C -0.116 4.116 22 H 0.072 0.928 23 C -0.139 4.139 24 C 0.046 3.954 25 H 0.056 0.944 26 H 0.069 0.931 27 H 0.044 0.956 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.082 0.918 33 H 0.062 0.938 34 H 0.040 0.960 35 H 0.039 0.961 36 H 0.263 0.737 37 H 0.094 0.906 38 H 0.055 0.945 39 H 0.039 0.961 40 H 0.093 0.907 41 H 0.076 0.924 42 H 0.070 0.930 43 H 0.054 0.946 44 H 0.054 0.946 45 H 0.059 0.941 46 H 0.078 0.922 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.492 6.904 12.019 19.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.133 4.133 3 C -0.201 4.201 4 C -0.008 4.008 5 N -0.331 5.331 6 C 0.126 3.874 7 C -0.563 4.563 8 H 0.074 0.926 9 C -0.140 4.140 10 N -0.535 5.535 11 Si 0.724 3.276 12 H -0.202 1.202 13 H -0.212 1.212 14 H -0.203 1.203 15 C 0.292 3.708 16 O -0.399 6.399 17 C -0.099 4.099 18 N -0.235 5.235 19 C -0.078 4.078 20 C -0.164 4.164 21 C -0.135 4.135 22 H 0.091 0.909 23 C -0.196 4.196 24 C -0.082 4.082 25 H 0.075 0.925 26 H 0.088 0.912 27 H 0.063 0.937 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.100 0.900 33 H 0.080 0.920 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.072 0.928 37 H 0.112 0.888 38 H 0.073 0.927 39 H 0.058 0.942 40 H 0.111 0.889 41 H 0.094 0.906 42 H 0.088 0.912 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.078 0.922 46 H 0.096 0.904 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 13.096 5.830 11.587 18.432 hybrid contribution 0.035 0.584 -0.511 0.777 sum 13.131 6.414 11.076 18.337 Atomic orbital electron populations 1.21920 0.94554 1.03105 1.00930 1.21587 0.97172 0.95728 0.98838 1.21779 1.00441 0.96082 1.01794 1.21514 0.98792 0.82664 0.97873 1.48200 1.21855 1.06123 1.56877 1.19349 0.78671 0.96228 0.93154 1.21435 0.94966 1.44285 0.95630 0.92621 1.24912 0.95066 0.95464 0.98597 1.69918 0.99804 1.47166 1.36646 0.86593 0.77307 0.78971 0.84752 1.20192 1.21246 1.20331 1.20133 0.85087 0.86303 0.79316 1.90651 1.74463 1.17179 1.57576 1.22317 0.95576 0.92327 0.99638 1.63268 1.01055 1.30181 1.28951 1.23063 0.96186 1.00085 0.88485 1.22825 0.95108 0.99173 0.99297 1.22380 0.95818 0.98666 0.96647 0.90945 1.21719 0.95646 1.00868 1.01414 1.22949 0.91024 0.99644 0.94574 0.92467 0.91231 0.93718 0.91896 0.92422 0.92898 0.93030 0.89957 0.91999 0.94208 0.94288 0.92771 0.88812 0.92733 0.94244 0.88883 0.90555 0.91160 0.92717 0.92728 0.92235 0.90382 0.93000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 8.18 37.16 0.30 -1.96 16 2 C -0.11 -1.56 3.12 -90.62 -0.28 -1.85 16 3 C -0.14 -1.54 9.19 37.16 0.34 -1.20 16 4 C 0.12 1.88 4.70 -4.04 -0.02 1.87 16 5 N -0.60 -12.61 2.28 -175.06 -0.40 -13.01 16 6 C 0.25 6.37 4.23 -5.20 -0.02 6.34 16 7 C -0.52 -15.02 9.39 -34.44 -0.32 -15.34 16 8 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 9 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 10 N -0.90 -26.79 13.29 55.43 0.74 -26.05 16 11 Si 0.90 22.21 29.54 -169.99 -5.02 17.19 16 12 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 13 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 15 C 0.51 10.74 7.47 -10.98 -0.08 10.66 16 16 O -0.52 -13.46 14.62 5.56 0.08 -13.38 16 17 C 0.03 0.52 3.61 -4.98 -0.02 0.50 16 18 N -0.51 -8.03 4.86 -232.69 -1.13 -9.16 16 19 C 0.05 0.73 5.75 -2.30 -0.01 0.72 16 20 C -0.13 -1.43 6.52 -24.59 -0.16 -1.59 16 21 C -0.12 -1.16 3.54 -88.80 -0.31 -1.48 16 22 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 23 C -0.14 -1.14 9.13 37.15 0.34 -0.80 16 24 C 0.05 0.55 6.46 -2.84 -0.02 0.53 16 25 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.07 1.27 5.89 -51.93 -0.31 0.97 16 27 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.87 7.30 -51.93 -0.38 0.49 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 1.41 8.07 -51.93 -0.42 0.99 16 33 H 0.06 0.85 6.44 -51.93 -0.33 0.52 16 34 H 0.04 1.18 7.42 -51.93 -0.39 0.80 16 35 H 0.04 1.01 5.98 -51.93 -0.31 0.70 16 36 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 37 H 0.09 1.36 7.29 -51.92 -0.38 0.98 16 38 H 0.05 0.76 6.97 -51.93 -0.36 0.40 16 39 H 0.04 0.58 7.62 -51.93 -0.40 0.18 16 40 H 0.09 1.65 7.38 -51.93 -0.38 1.27 16 41 H 0.08 0.88 8.02 -51.93 -0.42 0.46 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.05 0.40 8.14 -51.92 -0.42 -0.02 16 44 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 46 H 0.08 0.92 7.82 -51.93 -0.41 0.52 16 47 H 0.05 0.55 7.55 -51.93 -0.39 0.16 16 LS Contribution 363.92 15.07 5.48 5.48 Total: -1.00 -32.65 363.92 -9.25 -41.90 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -8.64 Total: -1.07 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: -0.37 Total: -1.91 kcal Atomic # 7 Polarization: -47.42 SS G_CDS: -0.79 Total: -48.21 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: 0.08 Total: -13.38 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.65 -9.25 -41.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001625794779.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.239 kcal (2) G-P(sol) polarization free energy of solvation -32.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds