Wall clock time and date at job start Tue Mar 31 2020 06:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.53002 * 109.47233 * 240.00343 * 2 1 3 5 5 N 1.46503 * 109.46922 * 295.00015 * 4 2 1 6 6 C 1.46496 * 120.00346 * 89.99542 * 5 4 2 7 7 C 1.50700 * 109.46769 * 90.00028 * 6 5 4 8 8 H 1.08000 * 119.99901 * 0.02562 * 7 6 5 9 9 C 1.37881 * 119.99799 * 180.02562 * 7 6 5 10 10 N 1.31511 * 120.00165 * 359.97438 * 9 7 6 11 11 Si 1.86806 * 119.99934 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47183 * 59.99819 * 11 9 7 13 13 H 1.48496 * 109.46878 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.46885 * 299.99819 * 11 9 7 15 15 C 1.34779 * 119.99689 * 270.00230 * 5 4 2 16 16 O 1.21276 * 119.99935 * 180.02562 * 15 5 4 17 17 C 1.50702 * 120.00215 * 359.97438 * 15 5 4 18 18 N 1.46894 * 109.47354 * 180.02562 * 17 15 5 19 19 C 1.47842 * 111.00199 * 290.84478 * 18 17 15 20 20 C 1.54911 * 104.79646 * 213.63273 * 19 18 17 21 21 C 1.55140 * 101.65144 * 37.07242 * 20 19 18 22 22 H 1.08999 * 110.70895 * 82.72307 * 21 20 19 23 23 C 1.52992 * 110.70514 * 205.96235 * 21 20 19 24 24 C 1.47441 * 110.99996 * 170.00109 * 18 17 15 25 25 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 26 26 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 28 28 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 29 29 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 30 30 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 31 31 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.47059 * 54.99596 * 4 2 1 33 33 H 1.08996 * 109.47073 * 174.99688 * 4 2 1 34 34 H 1.09001 * 109.47445 * 210.00035 * 6 5 4 35 35 H 1.08996 * 109.47286 * 330.00388 * 6 5 4 36 36 H 0.97002 * 120.00154 * 180.02562 * 10 9 7 37 37 H 1.09009 * 109.47193 * 300.00759 * 17 15 5 38 38 H 1.09001 * 109.46542 * 60.00082 * 17 15 5 39 39 H 1.08999 * 110.37694 * 332.46687 * 19 18 17 40 40 H 1.08998 * 110.37046 * 94.80495 * 19 18 17 41 41 H 1.08994 * 110.99060 * 278.98283 * 20 19 18 42 42 H 1.09000 * 111.01882 * 155.17779 * 20 19 18 43 43 H 1.09008 * 109.47338 * 173.59845 * 23 21 20 44 44 H 1.09001 * 109.47214 * 293.59464 * 23 21 20 45 45 H 1.08999 * 109.47329 * 53.60107 * 23 21 20 46 46 H 1.09001 * 109.88818 * 242.66730 * 24 18 17 47 47 H 1.09002 * 109.89191 * 3.69068 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.6525 -2.1328 -1.1907 6 6 0.3746 -2.5659 -1.7613 7 6 0.5716 -2.9407 -3.2075 8 1 1.5509 -2.8644 -3.6566 9 6 -0.4983 -3.3812 -3.9575 10 7 -1.6906 -3.4746 -3.4105 11 14 -0.2539 -3.8465 -5.7501 12 1 0.7304 -4.9544 -5.8442 13 1 -1.5495 -4.2842 -6.3288 14 1 0.2514 -2.6701 -6.5023 15 6 2.4715 -3.0330 -0.6116 16 8 2.1510 -4.2016 -0.5635 17 6 3.7863 -2.5876 -0.0250 18 7 4.4881 -3.7474 0.5409 19 6 3.7934 -4.2514 1.7447 20 6 4.9252 -4.7712 2.6659 21 6 6.0439 -3.7281 2.4070 22 1 5.8897 -2.8380 3.0170 23 6 7.4224 -4.3359 2.6733 24 6 5.8727 -3.3992 0.9090 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 3.1299 1.4426 -0.0005 32 1 1.6054 -0.2617 -2.1370 33 1 3.1263 -0.6442 -1.2952 34 1 0.0043 -3.4298 -1.2092 35 1 -0.3484 -1.7532 -1.6919 36 1 -2.4433 -3.7848 -3.9380 37 1 4.3992 -2.1381 -0.8064 38 1 3.6038 -1.8541 0.7604 39 1 3.2469 -3.4447 2.2332 40 1 3.1165 -5.0636 1.4799 41 1 5.2450 -5.7692 2.3664 42 1 4.6150 -4.7600 3.7108 43 1 8.1956 -3.6266 2.3778 44 1 7.5218 -4.5600 3.7354 45 1 7.5323 -5.2542 2.0963 46 1 6.5731 -3.9888 0.3175 47 1 6.0459 -2.3367 0.7380 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001625794779.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:15 Heat of formation + Delta-G solvation = -65.220335 kcal Electronic energy + Delta-G solvation = -23567.648169 eV Core-core repulsion = 20362.985888 eV Total energy + Delta-G solvation = -3204.662281 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.09734 -39.58398 -37.70221 -35.39058 -34.24881 -34.05751 -30.93776 -30.05085 -28.16798 -27.97225 -26.83785 -25.92202 -24.31904 -22.17811 -21.38664 -21.09237 -19.90532 -18.65069 -17.89328 -17.55250 -16.70137 -16.42879 -16.08741 -15.91571 -15.51501 -15.10082 -14.65704 -14.50655 -14.35765 -14.20937 -13.82225 -13.71819 -13.56136 -13.38813 -13.07713 -12.99512 -12.90673 -12.65530 -12.62373 -12.54660 -12.30783 -12.14491 -12.08485 -11.83529 -11.78730 -11.61445 -11.55501 -11.51505 -11.47046 -10.61183 -10.47280 -9.37024 -9.17964 -8.20369 -6.34807 1.35121 1.39872 1.46886 1.89719 2.26720 2.42609 3.08032 3.10066 3.60106 3.70281 3.83569 3.93579 3.98816 4.04384 4.19815 4.30220 4.31819 4.35003 4.55978 4.62436 4.63994 4.67839 4.69467 4.83081 4.87906 4.92027 4.93174 5.05190 5.05872 5.07070 5.12258 5.12998 5.20996 5.24167 5.29838 5.31272 5.44696 5.49763 5.50333 5.61262 5.88949 5.99094 6.10628 6.12415 6.73420 6.86681 7.31057 7.58043 8.85816 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015346 B = 0.004886 C = 0.004082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.128220 B = 5729.728210 C = 6857.438132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.105 4.105 3 C -0.135 4.135 4 C 0.110 3.890 5 N -0.601 5.601 6 C 0.265 3.735 7 C -0.543 4.543 8 H 0.050 0.950 9 C 0.008 3.992 10 N -0.928 5.928 11 Si 0.964 3.036 12 H -0.280 1.280 13 H -0.278 1.278 14 H -0.259 1.259 15 C 0.494 3.506 16 O -0.582 6.582 17 C 0.049 3.951 18 N -0.541 5.541 19 C 0.048 3.952 20 C -0.119 4.119 21 C -0.106 4.106 22 H 0.087 0.913 23 C -0.135 4.135 24 C 0.045 3.955 25 H 0.049 0.951 26 H 0.027 0.973 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.097 0.903 34 H -0.012 1.012 35 H 0.035 0.965 36 H 0.266 0.734 37 H 0.116 0.884 38 H 0.084 0.916 39 H 0.040 0.960 40 H 0.049 0.951 41 H 0.069 0.931 42 H 0.088 0.912 43 H 0.067 0.933 44 H 0.065 0.935 45 H 0.051 0.949 46 H 0.076 0.924 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.309 9.161 12.460 22.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.125 4.125 3 C -0.193 4.193 4 C -0.012 4.012 5 N -0.332 5.332 6 C 0.143 3.857 7 C -0.582 4.582 8 H 0.068 0.932 9 C -0.190 4.190 10 N -0.568 5.568 11 Si 0.789 3.211 12 H -0.206 1.206 13 H -0.203 1.203 14 H -0.184 1.184 15 C 0.282 3.718 16 O -0.462 6.462 17 C -0.082 4.082 18 N -0.266 5.266 19 C -0.079 4.079 20 C -0.157 4.157 21 C -0.125 4.125 22 H 0.105 0.895 23 C -0.193 4.193 24 C -0.082 4.082 25 H 0.069 0.931 26 H 0.046 0.954 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.115 0.885 34 H 0.006 0.994 35 H 0.053 0.947 36 H 0.075 0.925 37 H 0.134 0.866 38 H 0.101 0.899 39 H 0.058 0.942 40 H 0.067 0.933 41 H 0.088 0.912 42 H 0.106 0.894 43 H 0.086 0.914 44 H 0.084 0.916 45 H 0.070 0.930 46 H 0.095 0.905 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 15.947 8.143 12.039 21.577 hybrid contribution -0.892 -0.140 -0.622 1.097 sum 15.054 8.002 11.417 20.519 Atomic orbital electron populations 1.21887 0.96254 1.00559 1.01715 1.21523 0.95643 0.97850 0.97479 1.21722 1.01795 0.93215 1.02547 1.21845 1.00875 0.79665 0.98832 1.48199 1.20215 1.08532 1.56281 1.18766 0.81172 0.94069 0.91670 1.21734 0.94812 1.44742 0.96903 0.93191 1.25822 0.94705 0.95163 1.03345 1.70044 1.00622 1.47698 1.38437 0.85522 0.77422 0.78925 0.79264 1.20606 1.20265 1.18376 1.21236 0.86631 0.85475 0.78441 1.90622 1.76006 1.19789 1.59755 1.22200 0.92366 0.92872 1.00728 1.63129 1.02892 1.30767 1.29807 1.22938 0.96887 0.98884 0.89202 1.22795 0.94351 0.99265 0.99319 1.22360 0.96078 0.98649 0.95436 0.89467 1.21692 0.94730 1.00751 1.02094 1.23036 0.88352 1.00971 0.95871 0.93143 0.95375 0.91464 0.91450 0.92401 0.91488 0.90806 0.91151 0.88519 0.99429 0.94735 0.92499 0.86570 0.89877 0.94159 0.93268 0.91214 0.89391 0.91383 0.91604 0.92967 0.90525 0.90833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.50 8.18 71.98 0.59 -3.91 16 2 C -0.11 -2.71 3.12 -10.79 -0.03 -2.74 16 3 C -0.14 -2.40 9.19 71.98 0.66 -1.74 16 4 C 0.11 3.46 4.70 86.38 0.41 3.86 16 5 N -0.60 -26.07 2.28 -826.16 -1.88 -27.95 16 6 C 0.26 14.61 4.23 85.63 0.36 14.97 16 7 C -0.54 -32.29 9.39 25.60 0.24 -32.05 16 8 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 9 C 0.01 0.50 5.46 84.66 0.46 0.96 16 10 N -0.93 -57.44 13.29 21.45 0.28 -57.16 16 11 Si 0.96 46.20 29.54 68.60 2.03 48.23 16 12 H -0.28 -13.54 7.11 99.48 0.71 -12.84 16 13 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 14 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 15 C 0.49 21.55 7.47 87.66 0.65 22.21 16 16 O -0.58 -31.93 14.62 -3.02 -0.04 -31.97 16 17 C 0.05 1.49 3.61 85.56 0.31 1.80 16 18 N -0.54 -16.56 4.86 -890.10 -4.33 -20.89 16 19 C 0.05 1.47 5.75 86.78 0.50 1.96 16 20 C -0.12 -2.56 6.52 31.98 0.21 -2.35 16 21 C -0.11 -1.80 3.54 -9.61 -0.03 -1.84 16 22 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 23 C -0.14 -1.79 9.13 71.98 0.66 -1.14 16 24 C 0.04 0.94 6.46 86.65 0.56 1.50 16 25 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.03 1.07 5.89 -2.39 -0.01 1.06 16 27 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.07 1.70 7.30 -2.39 -0.02 1.68 16 29 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.07 1.04 8.14 -2.39 -0.02 1.03 16 31 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.07 2.38 8.07 -2.39 -0.02 2.36 16 33 H 0.10 2.35 6.44 -2.39 -0.02 2.34 16 34 H -0.01 -0.81 7.42 -2.39 -0.02 -0.82 16 35 H 0.03 1.92 5.98 -2.39 -0.01 1.90 16 36 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 37 H 0.12 2.98 7.29 -2.38 -0.02 2.96 16 38 H 0.08 2.05 6.97 -2.39 -0.02 2.03 16 39 H 0.04 1.17 7.62 -2.39 -0.02 1.15 16 40 H 0.05 1.89 7.38 -2.39 -0.02 1.87 16 41 H 0.07 1.57 8.02 -2.39 -0.02 1.56 16 42 H 0.09 1.56 8.14 -2.39 -0.02 1.55 16 43 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 44 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.05 0.78 8.10 -2.39 -0.02 0.76 16 46 H 0.08 1.63 7.82 -2.39 -0.02 1.62 16 47 H 0.07 1.24 7.55 -2.39 -0.02 1.22 16 Total: -1.00 -76.70 363.92 2.51 -74.19 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: 0.91 Total: 14.07 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: 5.54 Total: 1.49 kcal Atomic # 7 Polarization: -100.08 SS G_CDS: -5.93 Total: -106.00 kcal Atomic # 8 Polarization: -31.93 SS G_CDS: -0.04 Total: -31.97 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.23 kcal Total: -76.70 2.51 -74.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001625794779.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.970 kcal (2) G-P(sol) polarization free energy of solvation -76.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds