Wall clock time and date at job start Tue Mar 31 2020 06:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.46799 * 2 1 4 4 C 1.52998 * 109.47278 * 119.99807 * 2 1 3 5 5 N 1.46510 * 109.47035 * 174.99969 * 4 2 1 6 6 C 1.46500 * 119.99732 * 90.00511 * 5 4 2 7 7 C 1.50695 * 109.47109 * 89.99819 * 6 5 4 8 8 H 1.07995 * 120.00496 * 359.97438 * 7 6 5 9 9 C 1.37880 * 119.99572 * 179.97438 * 7 6 5 10 10 N 1.31511 * 120.00327 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 119.99951 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.47297 * 59.99744 * 11 9 7 13 13 H 1.48503 * 109.47261 * 299.99924 * 11 9 7 14 14 H 1.48500 * 109.47454 * 179.97438 * 11 9 7 15 15 C 1.34774 * 119.99995 * 270.00175 * 5 4 2 16 16 O 1.21282 * 120.00096 * 179.97438 * 15 5 4 17 17 C 1.50701 * 120.00042 * 0.02562 * 15 5 4 18 18 N 1.46902 * 109.46989 * 179.97438 * 17 15 5 19 19 C 1.48539 * 110.99837 * 52.60551 * 18 17 15 20 20 C 1.54935 * 103.22741 * 159.71835 * 19 18 17 21 21 C 1.54594 * 102.92148 * 322.58540 * 20 19 18 22 22 H 1.08993 * 110.39581 * 262.99747 * 21 20 19 23 23 C 1.53002 * 110.30832 * 140.87418 * 21 20 19 24 24 C 1.47900 * 110.99800 * 169.99753 * 18 17 15 25 25 H 1.09002 * 109.47588 * 299.99668 * 1 2 3 26 26 H 1.08992 * 109.47689 * 60.00250 * 1 2 3 27 27 H 1.09008 * 109.46854 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47271 * 239.99993 * 2 1 3 29 29 H 1.09004 * 109.47338 * 60.00351 * 3 2 1 30 30 H 1.09004 * 109.47214 * 180.02562 * 3 2 1 31 31 H 1.08996 * 109.47063 * 299.99867 * 3 2 1 32 32 H 1.09001 * 109.47084 * 55.00361 * 4 2 1 33 33 H 1.08994 * 109.47453 * 294.99956 * 4 2 1 34 34 H 1.09002 * 109.47129 * 329.99653 * 6 5 4 35 35 H 1.08998 * 109.46845 * 210.00459 * 6 5 4 36 36 H 0.97006 * 119.99995 * 359.97438 * 10 9 7 37 37 H 1.08993 * 109.47055 * 299.99755 * 17 15 5 38 38 H 1.09000 * 109.47220 * 60.00306 * 17 15 5 39 39 H 1.09000 * 110.66665 * 278.16011 * 19 18 17 40 40 H 1.09005 * 110.66527 * 41.28217 * 19 18 17 41 41 H 1.08996 * 110.72485 * 204.23021 * 20 19 18 42 42 H 1.09002 * 110.72330 * 80.94169 * 20 19 18 43 43 H 1.09005 * 109.46704 * 304.28174 * 23 21 20 44 44 H 1.08998 * 109.47323 * 64.28313 * 23 21 20 45 45 H 1.09007 * 109.47244 * 184.28553 * 23 21 20 46 46 H 1.08995 * 109.92128 * 333.51396 * 24 18 17 47 47 H 1.08999 * 109.91324 * 94.61359 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5001 -0.8263 1.1905 6 6 4.3343 0.2341 1.7612 7 6 4.6221 -0.0766 3.2075 8 1 4.2232 -0.9740 3.6567 9 6 5.3948 0.7848 3.9571 10 7 5.8802 1.8779 3.4102 11 14 5.7521 0.3993 5.7496 12 1 6.4676 -0.8986 5.8437 13 1 4.4747 0.3160 6.5022 14 1 6.5987 1.4737 6.3278 15 6 4.0758 -1.8986 0.6115 16 8 5.2845 -1.9854 0.5625 17 6 3.2176 -2.9892 0.0240 18 7 4.0773 -4.0369 -0.5428 19 6 5.0730 -4.5058 0.4547 20 6 5.4970 -5.8920 -0.0922 21 6 4.1746 -6.4603 -0.6564 22 1 3.7044 -7.1218 0.0712 23 6 4.4341 -7.2101 -1.9646 24 6 3.2850 -5.2297 -0.9131 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8899 27 1 -0.3633 -1.0278 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.6766 1.9564 0.8900 30 1 3.1299 1.4426 -0.0005 31 1 1.6765 1.9563 -0.8900 32 1 1.6054 -1.7198 1.2952 33 1 1.7517 -0.1583 2.1369 34 1 3.8090 1.1867 1.6918 35 1 5.2721 0.2954 1.2091 36 1 5.6950 2.0779 2.4793 37 1 2.5891 -3.4173 0.8048 38 1 2.5876 -2.5722 -0.7618 39 1 5.9270 -3.8296 0.4930 40 1 4.6146 -4.6043 1.4388 41 1 5.8768 -6.5238 0.7107 42 1 6.2390 -5.7840 -0.8833 43 1 4.9374 -6.5480 -2.6691 44 1 5.0642 -8.0774 -1.7674 45 1 3.4856 -7.5391 -2.3892 46 1 2.3876 -5.2853 -0.2971 47 1 3.0097 -5.1802 -1.9665 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001625794780.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:18 Heat of formation + Delta-G solvation = -44.819401 kcal Electronic energy + Delta-G solvation = -23666.010286 eV Core-core repulsion = 20462.232656 eV Total energy + Delta-G solvation = -3203.777630 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.81878 -38.34273 -36.37478 -33.86912 -33.15502 -32.39956 -29.72802 -28.26190 -26.95282 -26.64180 -25.45626 -24.51758 -22.62025 -21.11772 -20.31319 -20.05219 -18.50850 -16.96069 -16.54289 -16.16301 -15.31538 -15.14028 -14.74463 -14.33686 -13.96021 -13.74955 -13.63128 -13.35091 -13.25242 -13.09174 -12.55865 -12.36024 -12.23167 -12.09905 -11.84957 -11.77069 -11.57070 -11.44838 -11.20751 -10.92693 -10.87531 -10.84880 -10.74952 -10.66140 -10.52555 -10.44558 -10.33233 -10.09545 -9.08075 -8.82155 -8.36509 -8.19939 -7.58162 -6.36807 -4.08491 3.36992 3.42805 3.46758 3.63434 3.69737 4.26827 4.53903 4.61512 4.73921 4.83509 4.96721 5.05336 5.10293 5.28307 5.38012 5.40025 5.40900 5.44117 5.48555 5.51204 5.61451 5.65953 5.74373 5.77321 5.82601 5.88160 5.95262 6.02959 6.03745 6.08552 6.09515 6.13773 6.23719 6.31418 6.47438 6.54685 6.58484 6.85893 7.05704 7.08795 7.19909 7.46282 8.06895 8.32347 8.44926 8.79699 9.06774 9.60782 11.00301 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.013255 B = 0.005459 C = 0.004167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.888641 B = 5127.776699 C = 6717.540590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.114 4.114 3 C -0.148 4.148 4 C 0.116 3.884 5 N -0.591 5.591 6 C 0.235 3.765 7 C -0.605 4.605 8 H 0.049 0.951 9 C 0.020 3.980 10 N -0.909 5.909 11 Si 1.070 2.930 12 H -0.288 1.288 13 H -0.289 1.289 14 H -0.281 1.281 15 C 0.507 3.493 16 O -0.527 6.527 17 C 0.029 3.971 18 N -0.500 5.500 19 C 0.033 3.967 20 C -0.121 4.121 21 C -0.104 4.104 22 H 0.071 0.929 23 C -0.139 4.139 24 C 0.038 3.962 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.067 0.933 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.046 0.954 32 H 0.063 0.937 33 H 0.082 0.918 34 H 0.030 0.970 35 H 0.031 0.969 36 H 0.267 0.733 37 H 0.056 0.944 38 H 0.096 0.904 39 H 0.116 0.884 40 H 0.036 0.964 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.060 0.940 44 H 0.053 0.947 45 H 0.052 0.948 46 H 0.040 0.960 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.350 -12.096 -8.683 18.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.134 4.134 3 C -0.205 4.205 4 C -0.008 4.008 5 N -0.322 5.322 6 C 0.115 3.885 7 C -0.644 4.644 8 H 0.067 0.933 9 C -0.184 4.184 10 N -0.545 5.545 11 Si 0.898 3.102 12 H -0.215 1.215 13 H -0.215 1.215 14 H -0.207 1.207 15 C 0.293 3.707 16 O -0.403 6.403 17 C -0.103 4.103 18 N -0.225 5.225 19 C -0.094 4.094 20 C -0.160 4.160 21 C -0.123 4.123 22 H 0.089 0.911 23 C -0.197 4.197 24 C -0.090 4.090 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.066 0.934 32 H 0.082 0.918 33 H 0.100 0.900 34 H 0.047 0.953 35 H 0.049 0.951 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.114 0.886 39 H 0.134 0.866 40 H 0.054 0.946 41 H 0.086 0.914 42 H 0.093 0.907 43 H 0.079 0.921 44 H 0.072 0.928 45 H 0.071 0.929 46 H 0.058 0.942 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.654 -11.313 -7.796 16.238 hybrid contribution -1.528 -0.903 -0.566 1.863 sum -10.182 -12.216 -8.363 17.968 Atomic orbital electron populations 1.21775 0.95061 1.01394 1.01851 1.21591 0.95378 0.97592 0.98846 1.21915 1.02383 0.95136 1.01050 1.21543 0.81266 1.00007 0.98023 1.47992 1.05944 1.21845 1.56468 1.19424 0.90222 0.84854 0.94007 1.22247 1.36074 1.10216 0.95852 0.93309 1.25761 0.93321 0.93392 1.05924 1.70802 1.43385 1.25042 1.15318 0.83534 0.76367 0.75860 0.74462 1.21485 1.21532 1.20660 1.20135 0.88711 0.83086 0.78801 1.90594 1.14509 1.77181 1.58055 1.22301 0.95441 0.93649 0.98894 1.64663 1.12920 1.07135 1.37735 1.23515 0.97841 0.95669 0.92388 1.22638 0.96754 0.96130 1.00430 1.21990 0.96474 0.96129 0.97729 0.91082 1.21816 1.01243 0.99903 0.96727 1.23022 0.95184 0.89571 1.01248 0.92473 0.92733 0.92920 0.91487 0.92554 0.91584 0.93448 0.91844 0.89991 0.95271 0.95102 0.92240 0.92605 0.88598 0.86648 0.94560 0.91421 0.90708 0.92134 0.92800 0.92924 0.94175 0.90374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.19 37.15 0.34 -1.19 16 2 C -0.11 -1.57 3.12 -90.62 -0.28 -1.86 16 3 C -0.15 -2.24 8.18 37.16 0.30 -1.93 16 4 C 0.12 1.89 4.70 -4.04 -0.02 1.87 16 5 N -0.59 -12.40 2.28 -175.06 -0.40 -12.80 16 6 C 0.23 6.01 3.54 -5.20 -0.02 5.99 16 7 C -0.61 -17.24 9.39 -34.44 -0.32 -17.57 16 8 H 0.05 1.41 7.81 -52.49 -0.41 1.00 16 9 C 0.02 0.59 5.46 -17.82 -0.10 0.49 16 10 N -0.91 -27.70 13.65 55.43 0.76 -26.94 16 11 Si 1.07 25.68 29.90 -169.99 -5.08 20.59 16 12 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 13 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 14 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 15 C 0.51 10.65 7.38 -10.99 -0.08 10.57 16 16 O -0.53 -13.20 13.10 5.56 0.07 -13.12 16 17 C 0.03 0.46 4.07 -4.97 -0.02 0.44 16 18 N -0.50 -7.92 5.26 -231.89 -1.22 -9.14 16 19 C 0.03 0.55 5.30 -1.90 -0.01 0.54 16 20 C -0.12 -1.56 6.61 -24.87 -0.16 -1.72 16 21 C -0.10 -1.14 3.59 -89.26 -0.32 -1.46 16 22 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 23 C -0.14 -1.28 8.90 37.16 0.33 -0.95 16 24 C 0.04 0.46 6.35 -2.75 -0.02 0.44 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.50 8.14 -51.92 -0.42 0.08 16 28 H 0.07 0.93 7.30 -51.93 -0.38 0.55 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.07 1.19 5.90 -51.93 -0.31 0.88 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.88 6.44 -51.93 -0.33 0.55 16 33 H 0.08 1.42 8.07 -51.93 -0.42 1.00 16 34 H 0.03 0.74 5.84 -51.93 -0.30 0.44 16 35 H 0.03 0.90 7.29 -51.93 -0.38 0.52 16 36 H 0.27 8.09 7.22 -40.82 -0.29 7.79 16 37 H 0.06 0.82 7.07 -51.93 -0.37 0.46 16 38 H 0.10 1.35 7.26 -51.93 -0.38 0.97 16 39 H 0.12 2.32 5.97 -51.93 -0.31 2.01 16 40 H 0.04 0.62 8.02 -51.93 -0.42 0.21 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.07 0.96 7.84 -51.93 -0.41 0.56 16 43 H 0.06 0.60 8.11 -51.93 -0.42 0.18 16 44 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.05 0.42 8.14 -51.92 -0.42 0.00 16 46 H 0.04 0.45 7.57 -51.93 -0.39 0.06 16 47 H 0.08 0.88 7.69 -51.93 -0.40 0.48 16 LS Contribution 359.98 15.07 5.42 5.42 Total: -1.00 -32.49 359.98 -9.34 -41.83 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -8.52 Total: 0.51 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: -0.38 Total: -6.35 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: -0.86 Total: -48.88 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: 0.07 Total: -13.12 kcal Atomic # 14 Polarization: 25.68 SS G_CDS: -5.08 Total: 20.59 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.49 -9.34 -41.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001625794780.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.989 kcal (2) G-P(sol) polarization free energy of solvation -32.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds