Wall clock time and date at job start Tue Mar 31 2020 06:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47219 * 2 1 4 4 C 1.52997 * 109.47515 * 239.98979 * 2 1 3 5 5 C 1.53002 * 109.47245 * 300.00472 * 4 2 1 6 6 C 1.53007 * 109.46685 * 300.00122 * 5 4 2 7 7 C 1.52997 * 109.47379 * 59.99960 * 6 5 4 8 8 C 1.52998 * 109.46930 * 299.99578 * 7 6 5 9 9 H 1.08992 * 109.47467 * 299.99746 * 8 7 6 10 10 C 1.53008 * 109.46617 * 179.97438 * 8 7 6 11 11 C 1.50693 * 109.46905 * 65.00484 * 10 8 7 12 12 O 1.21281 * 120.00303 * 359.97438 * 11 10 8 13 13 N 1.34785 * 119.99934 * 179.97438 * 11 10 8 14 14 C 1.46497 * 119.99696 * 0.02562 * 13 11 10 15 15 C 1.46497 * 120.00144 * 179.97438 * 13 11 10 16 16 C 1.53005 * 109.46704 * 89.99835 * 15 13 11 17 17 N 1.46505 * 109.46904 * 180.02562 * 16 15 13 18 18 C 1.36931 * 119.99788 * 180.02562 * 17 16 15 19 19 H 1.08002 * 120.00438 * 0.02562 * 18 17 16 20 20 C 1.38817 * 119.99680 * 179.72358 * 18 17 16 21 21 N 1.31614 * 119.99888 * 0.27479 * 20 18 17 22 22 Si 1.86803 * 119.99862 * 180.27671 * 20 18 17 23 23 H 1.48496 * 109.47141 * 59.99751 * 22 20 18 24 24 H 1.48490 * 109.47071 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.46993 * 300.00028 * 22 20 18 26 26 H 1.09000 * 109.47370 * 300.00955 * 1 2 3 27 27 H 1.09006 * 109.46466 * 60.00925 * 1 2 3 28 28 H 1.08996 * 109.47219 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47185 * 60.00076 * 4 2 1 30 30 H 1.08997 * 109.47273 * 180.02562 * 4 2 1 31 31 H 1.09002 * 109.47267 * 59.99636 * 5 4 2 32 32 H 1.08997 * 109.47200 * 180.02562 * 5 4 2 33 33 H 1.09005 * 109.46412 * 180.02562 * 6 5 4 34 34 H 1.08997 * 109.47281 * 299.99521 * 6 5 4 35 35 H 1.09006 * 109.46650 * 179.97438 * 7 6 5 36 36 H 1.09002 * 109.47285 * 60.00049 * 7 6 5 37 37 H 1.08994 * 109.47264 * 304.99859 * 10 8 7 38 38 H 1.09001 * 109.46439 * 185.00118 * 10 8 7 39 39 H 1.09005 * 109.46791 * 269.99755 * 14 13 11 40 40 H 1.09003 * 109.47559 * 29.99345 * 14 13 11 41 41 H 1.08996 * 109.46937 * 149.99966 * 14 13 11 42 42 H 1.09003 * 109.47268 * 330.00753 * 15 13 11 43 43 H 1.08993 * 109.47301 * 210.00370 * 15 13 11 44 44 H 1.09003 * 109.46946 * 60.00761 * 16 15 13 45 45 H 1.08993 * 109.47679 * 300.00304 * 16 15 13 46 46 H 0.97000 * 119.99792 * 0.02562 * 17 16 15 47 47 H 0.97005 * 119.99715 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 1.5301 -2.1639 -1.2489 6 6 2.0400 -2.8850 0.0006 7 6 1.5299 -2.1635 1.2496 8 6 2.0400 -0.7211 1.2494 9 1 3.1299 -0.7211 1.2496 10 6 1.5293 0.0005 2.4983 11 6 2.1296 -0.6344 3.7260 12 8 2.8905 -1.5721 3.6134 13 7 1.8208 -0.1603 4.9494 14 6 0.9012 0.9720 5.0854 15 6 2.4040 -0.7779 6.1430 16 6 3.7218 -0.0802 6.4860 17 7 4.3053 -0.6982 7.6793 18 6 5.4940 -0.2362 8.1778 19 1 6.0013 0.5840 7.6916 20 6 6.0440 -0.8180 9.3118 21 7 5.4256 -1.8172 9.9047 22 14 7.6618 -0.1828 9.9964 23 1 7.5163 1.2490 10.3623 24 1 8.0313 -0.9672 11.2018 25 1 8.7243 -0.3255 8.9687 26 1 -0.3634 0.5140 0.8899 27 1 -0.3632 0.5137 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 1.6768 -0.2078 -2.1392 30 1 3.1301 -0.7218 -1.2488 31 1 0.4401 -2.1639 -1.2490 32 1 1.8939 -2.6780 -2.1385 33 1 1.6770 -3.9128 0.0004 34 1 3.1300 -2.8850 0.0007 35 1 1.8929 -2.6776 2.1397 36 1 0.4399 -2.1635 1.2496 37 1 0.4430 -0.0763 2.5436 38 1 1.8177 1.0508 2.4544 39 1 1.4669 1.9036 5.0672 40 1 0.1893 0.9631 4.2601 41 1 0.3635 0.8917 6.0301 42 1 2.5916 -1.8343 5.9507 43 1 1.7116 -0.6781 6.9788 44 1 3.5342 0.9762 6.6784 45 1 4.4141 -0.1800 5.6502 46 1 3.8495 -1.4346 8.1162 47 1 5.8101 -2.2240 10.6969 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753267270.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:45 Heat of formation + Delta-G solvation = -50.569043 kcal Electronic energy + Delta-G solvation = -22902.720537 eV Core-core repulsion = 19698.693584 eV Total energy + Delta-G solvation = -3204.026953 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.34270 -38.80205 -35.85116 -34.31662 -32.98368 -31.82923 -31.29310 -28.76586 -27.70876 -26.60780 -25.82864 -23.63118 -22.43747 -21.89222 -21.14771 -18.94397 -18.53557 -17.15839 -16.92289 -15.92161 -15.75744 -15.59085 -14.72592 -14.54504 -14.25043 -14.06198 -13.63593 -13.42080 -13.17628 -13.04041 -12.92214 -12.89738 -12.64047 -12.49532 -12.21486 -11.85824 -11.71159 -11.47910 -11.21482 -11.17115 -10.95019 -10.86096 -10.84573 -10.62755 -10.31536 -10.20182 -10.11685 -10.04756 -9.72854 -9.38326 -8.83551 -8.42467 -6.89782 -5.72911 -3.01924 2.82993 3.16702 3.47195 3.51082 3.52712 4.45059 4.49246 4.53659 4.64619 4.78693 4.94964 5.04893 5.07070 5.15321 5.20451 5.21210 5.35336 5.38883 5.46657 5.49235 5.54573 5.55723 5.63695 5.65613 5.69575 5.71867 5.78365 5.86888 5.89256 5.96139 6.02497 6.08107 6.11571 6.13949 6.16392 6.23945 6.44772 6.48175 6.63335 6.79863 6.96653 7.58499 7.72814 8.39858 8.46095 9.56452 10.13154 10.48373 11.50061 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028160 B = 0.003050 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.062576 B = 9178.630284 C = 9554.479467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.087 4.087 3 H 0.068 0.932 4 C -0.113 4.113 5 C -0.121 4.121 6 C -0.117 4.117 7 C -0.121 4.121 8 C -0.066 4.066 9 H 0.078 0.922 10 C -0.135 4.135 11 C 0.508 3.492 12 O -0.529 6.529 13 N -0.615 5.615 14 C 0.079 3.921 15 C 0.108 3.892 16 C 0.144 3.856 17 N -0.731 5.731 18 C -0.238 4.238 19 H 0.069 0.931 20 C -0.014 4.014 21 N -0.934 5.934 22 Si 0.909 3.091 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 H 0.054 0.946 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.083 0.917 36 H 0.055 0.945 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.056 0.944 40 H 0.068 0.932 41 H 0.072 0.928 42 H 0.084 0.916 43 H 0.075 0.925 44 H 0.017 0.983 45 H 0.022 0.978 46 H 0.384 0.616 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.709 4.533 -21.628 26.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.106 4.106 3 H 0.086 0.914 4 C -0.151 4.151 5 C -0.158 4.158 6 C -0.155 4.155 7 C -0.158 4.158 8 C -0.085 4.085 9 H 0.097 0.903 10 C -0.175 4.175 11 C 0.296 3.704 12 O -0.406 6.406 13 N -0.349 5.349 14 C -0.064 4.064 15 C -0.015 4.015 16 C 0.015 3.985 17 N -0.375 5.375 18 C -0.369 4.369 19 H 0.087 0.913 20 C -0.210 4.210 21 N -0.583 5.583 22 Si 0.740 3.260 23 H -0.213 1.213 24 H -0.216 1.216 25 H -0.212 1.212 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.101 0.899 36 H 0.074 0.926 37 H 0.110 0.890 38 H 0.108 0.892 39 H 0.074 0.926 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.102 0.898 43 H 0.093 0.907 44 H 0.035 0.965 45 H 0.040 0.960 46 H 0.217 0.783 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -14.160 4.121 -21.650 26.196 hybrid contribution 0.719 0.293 0.694 1.041 sum -13.441 4.414 -20.956 25.285 Atomic orbital electron populations 1.21999 0.95508 1.02171 1.01300 1.21138 0.95828 0.98976 0.94643 0.91365 1.21537 1.00683 0.95718 0.97127 1.21588 1.00742 0.95632 0.97884 1.21496 1.00995 0.98573 0.94425 1.21734 0.99816 0.95206 0.99085 1.20920 1.01057 0.94824 0.91656 0.90340 1.21828 1.01756 1.00977 0.92976 1.20695 0.81562 0.83699 0.84407 1.90696 1.35570 1.28280 1.86032 1.47866 1.46611 1.33840 1.06564 1.21794 0.92913 0.88992 1.02744 1.21703 0.95674 0.98667 0.85450 1.20900 0.91968 0.95056 0.90581 1.42209 1.24911 1.41002 1.29403 1.19168 0.97535 1.13139 1.07093 0.91285 1.24746 0.99177 0.98635 0.98446 1.69652 1.39995 1.26228 1.22422 0.86235 0.83601 0.77908 0.78262 1.21279 1.21637 1.21225 0.92672 0.93072 0.91940 0.92271 0.91977 0.91930 0.92529 0.92386 0.91986 0.89857 0.92587 0.89039 0.89180 0.92553 0.91370 0.90914 0.89806 0.90680 0.96544 0.96013 0.78286 0.93446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 8.15 37.16 0.30 -0.77 16 2 C -0.09 -0.71 2.72 -90.62 -0.25 -0.96 16 3 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 4 C -0.11 -0.91 5.45 -26.73 -0.15 -1.05 16 5 C -0.12 -0.99 5.65 -26.73 -0.15 -1.14 16 6 C -0.12 -1.17 5.92 -26.73 -0.16 -1.33 16 7 C -0.12 -1.34 4.67 -26.73 -0.12 -1.47 16 8 C -0.07 -0.69 1.61 -90.61 -0.15 -0.83 16 9 H 0.08 1.00 7.96 -51.93 -0.41 0.58 16 10 C -0.14 -1.38 3.22 -27.88 -0.09 -1.47 16 11 C 0.51 7.50 7.39 -10.98 -0.08 7.42 16 12 O -0.53 -10.01 13.55 5.56 0.08 -9.93 16 13 N -0.61 -8.78 2.87 -181.57 -0.52 -9.30 16 14 C 0.08 0.77 10.29 59.85 0.62 1.39 16 15 C 0.11 1.91 5.57 -4.04 -0.02 1.88 16 16 C 0.14 3.14 6.58 -4.04 -0.03 3.11 16 17 N -0.73 -19.58 5.60 -59.90 -0.34 -19.91 16 18 C -0.24 -6.98 9.99 -15.06 -0.15 -7.13 16 19 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 20 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 21 N -0.93 -29.02 13.06 55.49 0.72 -28.30 16 22 Si 0.91 23.04 29.55 -169.99 -5.02 18.01 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 26 H 0.05 0.35 6.54 -51.93 -0.34 0.01 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.46 4.81 -51.93 -0.25 0.21 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.48 6.43 -51.93 -0.33 0.15 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.08 1.18 5.95 -51.93 -0.31 0.87 16 36 H 0.06 0.56 6.43 -51.93 -0.33 0.22 16 37 H 0.09 0.75 5.96 -51.93 -0.31 0.44 16 38 H 0.09 0.79 8.11 -51.93 -0.42 0.37 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.48 6.44 -51.93 -0.33 0.15 16 41 H 0.07 0.66 7.89 -51.93 -0.41 0.25 16 42 H 0.08 1.65 7.42 -51.93 -0.39 1.26 16 43 H 0.07 1.22 7.89 -51.93 -0.41 0.81 16 44 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 45 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.38 10.64 7.67 -40.82 -0.31 10.32 16 47 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 355.73 15.07 5.36 5.36 Total: -1.00 -33.56 355.73 -8.58 -42.14 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -8.34 Total: 4.80 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: -0.52 Total: -2.87 kcal Atomic # 7 Polarization: -57.38 SS G_CDS: -0.13 Total: -57.51 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.08 Total: -9.93 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -5.02 Total: 18.01 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.56 -8.58 -42.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753267270.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.430 kcal (2) G-P(sol) polarization free energy of solvation -33.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds