Wall clock time and date at job start Tue Mar 31 2020 06:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47219 * 2 1 4 4 C 1.52997 * 109.47515 * 239.98979 * 2 1 3 5 5 C 1.53002 * 109.47245 * 300.00472 * 4 2 1 6 6 C 1.53007 * 109.46685 * 300.00122 * 5 4 2 7 7 C 1.52997 * 109.47379 * 59.99960 * 6 5 4 8 8 C 1.52998 * 109.46930 * 299.99578 * 7 6 5 9 9 H 1.08992 * 109.47467 * 299.99746 * 8 7 6 10 10 C 1.53008 * 109.46617 * 179.97438 * 8 7 6 11 11 C 1.50693 * 109.46905 * 65.00484 * 10 8 7 12 12 O 1.21281 * 120.00303 * 359.97438 * 11 10 8 13 13 N 1.34785 * 119.99934 * 179.97438 * 11 10 8 14 14 C 1.46497 * 119.99696 * 0.02562 * 13 11 10 15 15 C 1.46497 * 120.00144 * 179.97438 * 13 11 10 16 16 C 1.53005 * 109.46704 * 89.99835 * 15 13 11 17 17 N 1.46505 * 109.46904 * 180.02562 * 16 15 13 18 18 C 1.36931 * 119.99788 * 180.02562 * 17 16 15 19 19 H 1.08002 * 120.00438 * 0.02562 * 18 17 16 20 20 C 1.38817 * 119.99680 * 179.72358 * 18 17 16 21 21 N 1.31614 * 119.99888 * 0.27479 * 20 18 17 22 22 Si 1.86803 * 119.99862 * 180.27671 * 20 18 17 23 23 H 1.48496 * 109.47141 * 59.99751 * 22 20 18 24 24 H 1.48490 * 109.47071 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.46993 * 300.00028 * 22 20 18 26 26 H 1.09000 * 109.47370 * 300.00955 * 1 2 3 27 27 H 1.09006 * 109.46466 * 60.00925 * 1 2 3 28 28 H 1.08996 * 109.47219 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47185 * 60.00076 * 4 2 1 30 30 H 1.08997 * 109.47273 * 180.02562 * 4 2 1 31 31 H 1.09002 * 109.47267 * 59.99636 * 5 4 2 32 32 H 1.08997 * 109.47200 * 180.02562 * 5 4 2 33 33 H 1.09005 * 109.46412 * 180.02562 * 6 5 4 34 34 H 1.08997 * 109.47281 * 299.99521 * 6 5 4 35 35 H 1.09006 * 109.46650 * 179.97438 * 7 6 5 36 36 H 1.09002 * 109.47285 * 60.00049 * 7 6 5 37 37 H 1.08994 * 109.47264 * 304.99859 * 10 8 7 38 38 H 1.09001 * 109.46439 * 185.00118 * 10 8 7 39 39 H 1.09005 * 109.46791 * 269.99755 * 14 13 11 40 40 H 1.09003 * 109.47559 * 29.99345 * 14 13 11 41 41 H 1.08996 * 109.46937 * 149.99966 * 14 13 11 42 42 H 1.09003 * 109.47268 * 330.00753 * 15 13 11 43 43 H 1.08993 * 109.47301 * 210.00370 * 15 13 11 44 44 H 1.09003 * 109.46946 * 60.00761 * 16 15 13 45 45 H 1.08993 * 109.47679 * 300.00304 * 16 15 13 46 46 H 0.97000 * 119.99792 * 0.02562 * 17 16 15 47 47 H 0.97005 * 119.99715 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 1.5301 -2.1639 -1.2489 6 6 2.0400 -2.8850 0.0006 7 6 1.5299 -2.1635 1.2496 8 6 2.0400 -0.7211 1.2494 9 1 3.1299 -0.7211 1.2496 10 6 1.5293 0.0005 2.4983 11 6 2.1296 -0.6344 3.7260 12 8 2.8905 -1.5721 3.6134 13 7 1.8208 -0.1603 4.9494 14 6 0.9012 0.9720 5.0854 15 6 2.4040 -0.7779 6.1430 16 6 3.7218 -0.0802 6.4860 17 7 4.3053 -0.6982 7.6793 18 6 5.4940 -0.2362 8.1778 19 1 6.0013 0.5840 7.6916 20 6 6.0440 -0.8180 9.3118 21 7 5.4256 -1.8172 9.9047 22 14 7.6618 -0.1828 9.9964 23 1 7.5163 1.2490 10.3623 24 1 8.0313 -0.9672 11.2018 25 1 8.7243 -0.3255 8.9687 26 1 -0.3634 0.5140 0.8899 27 1 -0.3632 0.5137 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 1.6768 -0.2078 -2.1392 30 1 3.1301 -0.7218 -1.2488 31 1 0.4401 -2.1639 -1.2490 32 1 1.8939 -2.6780 -2.1385 33 1 1.6770 -3.9128 0.0004 34 1 3.1300 -2.8850 0.0007 35 1 1.8929 -2.6776 2.1397 36 1 0.4399 -2.1635 1.2496 37 1 0.4430 -0.0763 2.5436 38 1 1.8177 1.0508 2.4544 39 1 1.4669 1.9036 5.0672 40 1 0.1893 0.9631 4.2601 41 1 0.3635 0.8917 6.0301 42 1 2.5916 -1.8343 5.9507 43 1 1.7116 -0.6781 6.9788 44 1 3.5342 0.9762 6.6784 45 1 4.4141 -0.1800 5.6502 46 1 3.8495 -1.4346 8.1162 47 1 5.8101 -2.2240 10.6969 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753267270.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:44 Heat of formation + Delta-G solvation = -71.396852 kcal Electronic energy + Delta-G solvation = -22903.623699 eV Core-core repulsion = 19698.693584 eV Total energy + Delta-G solvation = -3204.930115 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.35765 -39.72943 -37.35503 -36.06287 -33.94851 -33.25694 -32.51324 -30.23878 -28.64865 -27.46677 -26.93993 -25.42417 -23.50885 -23.12144 -22.27902 -20.10948 -19.30604 -19.18680 -18.00736 -17.20049 -16.81069 -16.53604 -16.42435 -15.65012 -15.39032 -15.23671 -15.06284 -14.83177 -14.71514 -14.20534 -13.90679 -13.74488 -13.42226 -13.36606 -13.13169 -13.05874 -12.84268 -12.75465 -12.61424 -12.41133 -12.28372 -12.19199 -12.15150 -11.89458 -11.89055 -11.60214 -11.10941 -11.01765 -10.99633 -10.77590 -10.49809 -9.64716 -9.09880 -8.00248 -5.31499 1.44024 1.48607 1.54729 1.69185 2.03852 2.54202 3.32585 3.57325 3.73188 3.82062 3.95759 4.06020 4.14749 4.22155 4.25436 4.33058 4.36420 4.44092 4.51903 4.53603 4.54306 4.60762 4.67266 4.78920 4.80443 4.84501 4.93591 4.97212 4.99903 5.06585 5.09282 5.13842 5.23003 5.24005 5.31110 5.36084 5.39826 5.44543 5.51701 5.57584 5.63526 5.74025 6.21086 6.47884 7.26202 7.27304 7.98563 8.24395 9.22998 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028160 B = 0.003050 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.062576 B = 9178.630284 C = 9554.479467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.081 4.081 3 H 0.077 0.923 4 C -0.115 4.115 5 C -0.116 4.116 6 C -0.119 4.119 7 C -0.118 4.118 8 C -0.065 4.065 9 H 0.045 0.955 10 C -0.124 4.124 11 C 0.498 3.502 12 O -0.582 6.582 13 N -0.615 5.615 14 C 0.071 3.929 15 C 0.122 3.878 16 C 0.151 3.849 17 N -0.743 5.743 18 C -0.255 4.255 19 H 0.072 0.928 20 C -0.073 4.073 21 N -0.968 5.968 22 Si 0.980 3.020 23 H -0.272 1.272 24 H -0.290 1.290 25 H -0.280 1.280 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.058 0.942 29 H 0.076 0.924 30 H 0.049 0.951 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.042 0.958 35 H 0.044 0.956 36 H 0.072 0.928 37 H 0.123 0.877 38 H 0.114 0.886 39 H 0.063 0.937 40 H 0.104 0.896 41 H 0.081 0.919 42 H 0.056 0.944 43 H 0.093 0.907 44 H 0.029 0.971 45 H -0.004 1.004 46 H 0.375 0.625 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.393 6.768 -22.899 28.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.100 4.100 3 H 0.096 0.904 4 C -0.152 4.152 5 C -0.153 4.153 6 C -0.157 4.157 7 C -0.156 4.156 8 C -0.084 4.084 9 H 0.064 0.936 10 C -0.163 4.163 11 C 0.289 3.711 12 O -0.462 6.462 13 N -0.348 5.348 14 C -0.071 4.071 15 C -0.002 4.002 16 C 0.023 3.977 17 N -0.387 5.387 18 C -0.386 4.386 19 H 0.090 0.910 20 C -0.265 4.265 21 N -0.618 5.618 22 Si 0.807 3.193 23 H -0.198 1.198 24 H -0.216 1.216 25 H -0.206 1.206 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.095 0.905 30 H 0.067 0.933 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.091 0.909 37 H 0.140 0.860 38 H 0.132 0.868 39 H 0.082 0.918 40 H 0.122 0.878 41 H 0.100 0.900 42 H 0.074 0.926 43 H 0.111 0.889 44 H 0.047 0.953 45 H 0.014 0.986 46 H 0.207 0.793 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -15.879 6.410 -22.954 28.638 hybrid contribution 1.237 -0.416 1.051 1.676 sum -14.642 5.994 -21.903 27.020 Atomic orbital electron populations 1.21995 0.93950 1.02322 1.02548 1.21104 0.96995 0.98911 0.92978 0.90429 1.21566 1.00024 0.95730 0.97919 1.21556 1.01376 0.95593 0.96778 1.21499 0.99823 0.99019 0.95313 1.21661 1.00615 0.95509 0.97771 1.20883 0.99186 0.94903 0.93396 0.93636 1.21878 1.03071 1.01442 0.89930 1.21645 0.80813 0.83035 0.85650 1.90685 1.37994 1.30720 1.86806 1.47990 1.46810 1.34772 1.05229 1.22136 0.92784 0.87253 1.04908 1.21312 0.94319 0.96915 0.87680 1.20939 0.93194 0.95713 0.87881 1.42400 1.24659 1.41017 1.30610 1.19563 0.98508 1.13220 1.07350 0.90986 1.25652 1.02924 0.99040 0.98904 1.69814 1.41679 1.27515 1.22800 0.85134 0.79061 0.77788 0.77298 1.19818 1.21608 1.20642 0.91505 0.91820 0.92300 0.90503 0.93252 0.90698 0.91870 0.92293 0.93961 0.93717 0.90924 0.85960 0.86830 0.91795 0.87776 0.89979 0.92579 0.88866 0.95336 0.98583 0.79273 0.93700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 8.15 71.98 0.59 -0.95 16 2 C -0.08 -1.13 2.72 -10.79 -0.03 -1.16 16 3 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 4 C -0.11 -1.64 5.45 30.59 0.17 -1.48 16 5 C -0.12 -1.73 5.65 30.60 0.17 -1.56 16 6 C -0.12 -2.43 5.92 30.60 0.18 -2.24 16 7 C -0.12 -2.64 4.67 30.59 0.14 -2.50 16 8 C -0.06 -1.31 1.61 -10.79 -0.02 -1.33 16 9 H 0.05 1.22 7.96 -2.39 -0.02 1.20 16 10 C -0.12 -2.25 3.22 29.85 0.10 -2.16 16 11 C 0.50 14.66 7.39 87.65 0.65 15.31 16 12 O -0.58 -23.33 13.55 -3.03 -0.04 -23.37 16 13 N -0.62 -16.98 2.87 -846.76 -2.43 -19.41 16 14 C 0.07 1.16 10.29 127.77 1.31 2.47 16 15 C 0.12 4.38 5.57 86.38 0.48 4.86 16 16 C 0.15 6.71 6.58 86.38 0.57 7.28 16 17 N -0.74 -40.83 5.60 -343.44 -1.92 -42.75 16 18 C -0.25 -15.14 9.99 84.04 0.84 -14.30 16 19 H 0.07 4.13 7.83 -2.91 -0.02 4.11 16 20 C -0.07 -4.35 5.50 84.86 0.47 -3.88 16 21 N -0.97 -61.09 13.06 21.65 0.28 -60.81 16 22 Si 0.98 47.53 29.55 68.60 2.03 49.55 16 23 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 24 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 25 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 26 H 0.07 0.53 6.54 -2.39 -0.02 0.52 16 27 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 28 H 0.06 0.66 4.81 -2.39 -0.01 0.65 16 29 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.05 0.82 8.14 -2.39 -0.02 0.81 16 31 H 0.07 0.96 6.43 -2.39 -0.02 0.95 16 32 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 34 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.04 1.36 5.95 -2.38 -0.01 1.34 16 36 H 0.07 1.35 6.43 -2.39 -0.02 1.33 16 37 H 0.12 1.50 5.96 -2.39 -0.01 1.49 16 38 H 0.11 1.59 8.11 -2.39 -0.02 1.57 16 39 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 40 H 0.10 0.98 6.44 -2.39 -0.02 0.96 16 41 H 0.08 1.23 7.89 -2.39 -0.02 1.21 16 42 H 0.06 2.33 7.42 -2.39 -0.02 2.31 16 43 H 0.09 2.99 7.89 -2.39 -0.02 2.97 16 44 H 0.03 1.21 8.14 -2.39 -0.02 1.20 16 45 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 46 H 0.38 21.51 7.67 -92.71 -0.71 20.80 16 47 H 0.25 15.42 8.31 -92.70 -0.77 14.65 16 Total: -1.00 -75.75 355.73 3.76 -71.99 By element: Atomic # 1 Polarization: 26.22 SS G_CDS: 0.23 Total: 26.44 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: 5.62 Total: -1.64 kcal Atomic # 7 Polarization: -118.90 SS G_CDS: -4.07 Total: -122.97 kcal Atomic # 8 Polarization: -23.33 SS G_CDS: -0.04 Total: -23.37 kcal Atomic # 14 Polarization: 47.53 SS G_CDS: 2.03 Total: 49.55 kcal Total: -75.75 3.76 -71.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753267270.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.595 kcal (2) G-P(sol) polarization free energy of solvation -75.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds