Wall clock time and date at job start Tue Mar 31 2020 06:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09000 * 109.47256 * 2 1 4 4 C 1.53005 * 109.47095 * 240.00460 * 2 1 3 5 5 C 1.53000 * 109.47167 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.47320 * 59.99830 * 5 4 2 7 7 C 1.53008 * 109.46995 * 299.99845 * 6 5 4 8 8 C 1.53002 * 109.47237 * 120.00385 * 2 1 3 9 9 H 1.08990 * 109.47355 * 59.99676 * 8 2 1 10 10 C 1.53000 * 109.46776 * 299.99687 * 8 2 1 11 11 C 1.50703 * 109.46912 * 175.00090 * 10 8 2 12 12 O 1.21278 * 119.99985 * 359.97438 * 11 10 8 13 13 N 1.34777 * 120.00161 * 180.02562 * 11 10 8 14 14 C 1.46505 * 119.99832 * 359.97438 * 13 11 10 15 15 C 1.46496 * 120.00271 * 180.02562 * 13 11 10 16 16 C 1.52994 * 109.47253 * 89.99668 * 15 13 11 17 17 N 1.46500 * 109.47474 * 180.02562 * 16 15 13 18 18 C 1.36935 * 120.00399 * 180.02562 * 17 16 15 19 19 H 1.08002 * 119.99799 * 359.97438 * 18 17 16 20 20 C 1.38814 * 119.99833 * 179.97438 * 18 17 16 21 21 N 1.31618 * 120.00250 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99844 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.46881 * 60.00194 * 22 20 18 24 24 H 1.48503 * 109.47144 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47255 * 300.00434 * 22 20 18 26 26 H 1.09004 * 109.47022 * 299.99799 * 1 2 3 27 27 H 1.09001 * 109.47171 * 59.99790 * 1 2 3 28 28 H 1.09000 * 109.47256 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46946 * 299.99399 * 4 2 1 30 30 H 1.08993 * 109.47016 * 59.99810 * 4 2 1 31 31 H 1.08996 * 109.47224 * 179.97438 * 5 4 2 32 32 H 1.09000 * 109.47090 * 300.00046 * 5 4 2 33 33 H 1.09000 * 109.47312 * 59.99788 * 6 5 4 34 34 H 1.08998 * 109.47141 * 180.02562 * 6 5 4 35 35 H 1.09000 * 109.47044 * 300.00107 * 7 6 5 36 36 H 1.09001 * 109.47171 * 180.02562 * 7 6 5 37 37 H 1.09002 * 109.47398 * 295.00168 * 10 8 2 38 38 H 1.09001 * 109.47194 * 55.00349 * 10 8 2 39 39 H 1.08999 * 109.47333 * 89.99805 * 14 13 11 40 40 H 1.08997 * 109.47024 * 210.00620 * 14 13 11 41 41 H 1.09000 * 109.46875 * 330.00379 * 14 13 11 42 42 H 1.09000 * 109.47082 * 209.99555 * 15 13 11 43 43 H 1.09004 * 109.46754 * 329.99821 * 15 13 11 44 44 H 1.09001 * 109.47335 * 300.00356 * 16 15 13 45 45 H 1.08997 * 109.47465 * 59.99775 * 16 15 13 46 46 H 0.97008 * 119.99214 * 359.97438 * 17 16 15 47 47 H 0.97001 * 120.00028 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5699 -0.7217 -1.2490 6 6 4.0795 -1.4434 0.0002 7 6 3.5695 -0.7222 1.2495 8 6 2.0399 -0.7213 1.2492 9 1 1.6766 -1.7489 1.2492 10 6 1.5300 -0.0001 2.4984 11 6 1.9287 -0.7784 3.7258 12 8 2.5583 -1.8088 3.6124 13 7 1.5848 -0.3301 4.9494 14 6 0.8237 0.9143 5.0863 15 6 1.9728 -1.0864 6.1425 16 6 3.3399 -0.6030 6.6304 17 7 3.7283 -1.3597 7.8232 18 6 4.9223 -1.0991 8.4408 19 1 5.5780 -0.3358 8.0483 20 6 5.2900 -1.8158 9.5714 21 7 4.4912 -2.7462 10.0494 22 14 6.9192 -1.4607 10.4134 23 1 6.9466 -0.0451 10.8614 24 1 7.0739 -2.3545 11.5892 25 1 8.0319 -1.6996 9.4595 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.6767 -1.7489 -1.2493 30 1 1.6766 -0.2073 -2.1392 31 1 3.9333 -1.2359 -2.1388 32 1 3.9336 0.3058 -1.2487 33 1 3.7158 -2.4710 -0.0001 34 1 5.1694 -1.4434 0.0006 35 1 3.9332 0.3054 1.2497 36 1 3.9329 -1.2360 2.1395 37 1 1.9646 0.9985 2.5444 38 1 0.4437 0.0781 2.4548 39 1 -0.2431 0.6917 5.0681 40 1 1.0788 1.3941 6.0312 41 1 1.0694 1.5831 4.2613 42 1 1.2319 -0.9327 6.9270 43 1 2.0285 -2.1472 5.8980 44 1 4.0809 -0.7566 5.8459 45 1 3.2843 0.4578 6.8749 46 1 3.1391 -2.0450 8.1759 47 1 4.7479 -3.2468 10.8396 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753267271.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:48 Heat of formation + Delta-G solvation = -54.479442 kcal Electronic energy + Delta-G solvation = -22887.168741 eV Core-core repulsion = 19682.972220 eV Total energy + Delta-G solvation = -3204.196521 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.23603 -38.59816 -35.84384 -34.31906 -33.24769 -32.16637 -31.29806 -28.73053 -27.56339 -26.43196 -25.74945 -23.64213 -22.24987 -21.44244 -20.93687 -19.82779 -18.89091 -17.16239 -16.86655 -15.97352 -15.48743 -15.09118 -14.76261 -14.55501 -14.30965 -14.04809 -13.95141 -13.46401 -13.24838 -13.02413 -12.92670 -12.75773 -12.54383 -12.25796 -12.14472 -11.92504 -11.70923 -11.60785 -11.21199 -11.06995 -10.95327 -10.93434 -10.84685 -10.63331 -10.49415 -10.21384 -10.10515 -10.05169 -9.72146 -9.36849 -8.83839 -8.42487 -6.90089 -5.73139 -3.02250 2.83239 3.16759 3.47000 3.50899 3.52527 4.44840 4.47985 4.56629 4.64386 4.78599 4.91076 5.02158 5.08224 5.16340 5.23293 5.33033 5.36818 5.38319 5.44032 5.47513 5.55058 5.59092 5.63304 5.64196 5.67593 5.71701 5.78789 5.87230 5.89431 5.96257 6.07288 6.08052 6.13272 6.15347 6.17387 6.22609 6.46536 6.50011 6.62983 6.79043 6.96409 7.58975 7.72506 8.40080 8.45852 9.56181 10.12852 10.48012 11.49807 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024462 B = 0.003250 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.350595 B = 8614.156908 C = 9369.886013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.087 4.087 3 H 0.069 0.931 4 C -0.112 4.112 5 C -0.120 4.120 6 C -0.117 4.117 7 C -0.122 4.122 8 C -0.064 4.064 9 H 0.077 0.923 10 C -0.138 4.138 11 C 0.508 3.492 12 O -0.530 6.530 13 N -0.615 5.615 14 C 0.078 3.922 15 C 0.107 3.893 16 C 0.144 3.856 17 N -0.730 5.730 18 C -0.238 4.238 19 H 0.069 0.931 20 C -0.014 4.014 21 N -0.934 5.934 22 Si 0.909 3.091 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.285 1.285 26 H 0.057 0.943 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.053 0.947 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.054 0.946 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.075 0.925 43 H 0.084 0.916 44 H 0.022 0.978 45 H 0.016 0.984 46 H 0.384 0.616 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.483 8.602 -22.215 26.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.106 4.106 3 H 0.087 0.913 4 C -0.150 4.150 5 C -0.157 4.157 6 C -0.155 4.155 7 C -0.159 4.159 8 C -0.083 4.083 9 H 0.096 0.904 10 C -0.177 4.177 11 C 0.296 3.704 12 O -0.406 6.406 13 N -0.349 5.349 14 C -0.065 4.065 15 C -0.015 4.015 16 C 0.015 3.985 17 N -0.375 5.375 18 C -0.370 4.370 19 H 0.087 0.913 20 C -0.210 4.210 21 N -0.583 5.583 22 Si 0.740 3.260 23 H -0.213 1.213 24 H -0.216 1.216 25 H -0.212 1.212 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.104 0.896 37 H 0.108 0.892 38 H 0.111 0.889 39 H 0.072 0.928 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.093 0.907 43 H 0.102 0.898 44 H 0.040 0.960 45 H 0.034 0.966 46 H 0.217 0.783 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.995 8.115 -22.221 25.682 hybrid contribution 0.647 0.121 0.758 1.004 sum -9.348 8.236 -21.463 24.817 Atomic orbital electron populations 1.21922 0.95487 1.01924 1.01508 1.21173 0.95197 0.99548 0.94669 0.91276 1.21565 0.95658 1.00663 0.97080 1.21556 0.95579 1.00632 0.97980 1.21501 1.00078 0.99558 0.94352 1.21713 0.94519 1.00423 0.99234 1.20926 0.96104 0.99673 0.91615 0.90425 1.21861 1.02691 1.00191 0.92997 1.20696 0.79369 0.85894 0.84407 1.90694 1.39215 1.24595 1.86109 1.47868 1.55549 1.24992 1.06465 1.21792 0.95499 0.85989 1.03254 1.21682 0.97381 0.97038 0.85435 1.20895 0.92835 0.94656 0.90099 1.42210 1.22104 1.44007 1.29199 1.19167 0.95467 1.15871 1.06451 0.91281 1.24746 0.98714 0.98786 0.98739 1.69652 1.37230 1.26089 1.25311 0.86239 0.83577 0.77312 0.78894 1.21274 1.21636 1.21218 0.92430 0.92865 0.92639 0.92005 0.92285 0.92408 0.92232 0.92019 0.92253 0.92827 0.89595 0.89178 0.88935 0.92779 0.90664 0.91286 0.90678 0.89769 0.95996 0.96579 0.78278 0.93440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 8.85 37.15 0.33 -0.74 16 2 C -0.09 -0.71 2.25 -90.62 -0.20 -0.92 16 3 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 4 C -0.11 -0.90 5.20 -26.73 -0.14 -1.04 16 5 C -0.12 -1.03 5.92 -26.73 -0.16 -1.19 16 6 C -0.12 -1.24 5.92 -26.73 -0.16 -1.40 16 7 C -0.12 -1.45 4.94 -26.75 -0.13 -1.58 16 8 C -0.06 -0.68 1.36 -90.64 -0.12 -0.80 16 9 H 0.08 0.96 7.95 -51.93 -0.41 0.54 16 10 C -0.14 -1.41 3.51 -27.88 -0.10 -1.50 16 11 C 0.51 7.51 7.39 -10.98 -0.08 7.43 16 12 O -0.53 -10.02 13.54 5.56 0.08 -9.95 16 13 N -0.61 -8.78 2.87 -181.57 -0.52 -9.30 16 14 C 0.08 0.77 10.24 59.85 0.61 1.38 16 15 C 0.11 1.90 5.52 -4.05 -0.02 1.88 16 16 C 0.14 3.12 6.58 -4.04 -0.03 3.10 16 17 N -0.73 -19.52 5.60 -59.91 -0.34 -19.85 16 18 C -0.24 -6.97 9.99 -15.06 -0.15 -7.12 16 19 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 20 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 21 N -0.93 -28.99 13.06 55.49 0.72 -28.26 16 22 Si 0.91 22.99 29.55 -169.99 -5.02 17.97 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 26 H 0.06 0.37 6.32 -51.93 -0.33 0.04 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.09 1.32 5.95 -51.93 -0.31 1.01 16 37 H 0.09 0.80 7.40 -51.93 -0.38 0.41 16 38 H 0.09 0.76 6.14 -51.93 -0.32 0.44 16 39 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.75 8.07 -51.93 -0.42 0.33 16 41 H 0.07 0.52 6.44 -51.93 -0.33 0.19 16 42 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 43 H 0.08 1.66 7.42 -51.93 -0.39 1.27 16 44 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 46 H 0.38 10.62 7.67 -40.82 -0.31 10.31 16 47 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 362.57 15.07 5.46 5.46 Total: -1.00 -33.43 362.57 -8.73 -42.16 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -8.67 Total: 4.78 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: -0.45 Total: -3.02 kcal Atomic # 7 Polarization: -57.29 SS G_CDS: -0.13 Total: -57.42 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.08 Total: -9.95 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -5.02 Total: 17.97 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.43 -8.73 -42.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753267271.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.315 kcal (2) G-P(sol) polarization free energy of solvation -33.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds