Wall clock time and date at job start Tue Mar 31 2020 06:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.46939 * 2 1 4 4 C 1.52998 * 109.46932 * 120.00217 * 2 1 3 5 5 C 1.53002 * 109.46932 * 179.97438 * 4 2 1 6 6 C 1.52996 * 109.47263 * 299.99991 * 5 4 2 7 7 C 1.52998 * 109.47100 * 59.99741 * 6 5 4 8 8 C 1.52995 * 109.46933 * 240.00024 * 2 1 3 9 9 H 1.08995 * 109.47288 * 299.99762 * 8 2 1 10 10 C 1.52998 * 109.47153 * 60.00329 * 8 2 1 11 11 C 1.50706 * 109.47196 * 184.99907 * 10 8 2 12 12 O 1.21283 * 119.99451 * 359.97438 * 11 10 8 13 13 N 1.34771 * 119.99964 * 179.97438 * 11 10 8 14 14 C 1.46496 * 120.00157 * 0.02562 * 13 11 10 15 15 C 1.46496 * 120.00086 * 179.97438 * 13 11 10 16 16 C 1.53001 * 109.47596 * 270.00391 * 15 13 11 17 17 N 1.46496 * 109.47205 * 180.02562 * 16 15 13 18 18 C 1.36945 * 119.99718 * 179.97438 * 17 16 15 19 19 H 1.07997 * 119.99756 * 359.97438 * 18 17 16 20 20 C 1.38805 * 119.99878 * 179.97438 * 18 17 16 21 21 N 1.31624 * 120.00257 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99929 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47187 * 179.97438 * 22 20 18 24 24 H 1.48494 * 109.47141 * 300.00154 * 22 20 18 25 25 H 1.48498 * 109.47018 * 60.00200 * 22 20 18 26 26 H 1.09003 * 109.47278 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47055 * 299.99416 * 1 2 3 28 28 H 1.09001 * 109.47160 * 60.00000 * 1 2 3 29 29 H 1.08995 * 109.47486 * 60.00118 * 4 2 1 30 30 H 1.09003 * 109.47549 * 300.00063 * 4 2 1 31 31 H 1.09001 * 109.47160 * 179.97438 * 5 4 2 32 32 H 1.09007 * 109.47059 * 60.00203 * 5 4 2 33 33 H 1.09003 * 109.46778 * 300.00067 * 6 5 4 34 34 H 1.09000 * 109.47430 * 180.02562 * 6 5 4 35 35 H 1.09003 * 109.46986 * 180.02562 * 7 6 5 36 36 H 1.09003 * 109.47039 * 60.00486 * 7 6 5 37 37 H 1.08994 * 109.47354 * 64.99927 * 10 8 2 38 38 H 1.09001 * 109.47139 * 304.99501 * 10 8 2 39 39 H 1.09002 * 109.47045 * 270.00208 * 14 13 11 40 40 H 1.08995 * 109.47208 * 29.99433 * 14 13 11 41 41 H 1.08993 * 109.47501 * 150.00311 * 14 13 11 42 42 H 1.09002 * 109.47668 * 149.99472 * 15 13 11 43 43 H 1.09004 * 109.47001 * 30.00366 * 15 13 11 44 44 H 1.08997 * 109.46922 * 59.99046 * 16 15 13 45 45 H 1.09000 * 109.46483 * 299.99865 * 16 15 13 46 46 H 0.96996 * 120.00499 * 359.97438 * 17 16 15 47 47 H 0.97001 * 119.99885 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5700 -0.7219 1.2489 6 6 4.0795 -1.4434 -0.0003 7 6 3.5694 -0.7222 -1.2495 8 6 2.0400 -0.7212 -1.2492 9 1 1.6767 -1.7489 -1.2492 10 6 1.5300 0.0001 -2.4984 11 6 1.9287 -0.7782 -3.7258 12 8 2.5590 -1.8082 -3.6125 13 7 1.5847 -0.3298 -4.9493 14 6 0.8238 0.9146 -5.0862 15 6 1.9727 -1.0860 -6.1425 16 6 3.3398 -0.6027 -6.6306 17 7 3.7275 -1.3586 -7.8241 18 6 4.9215 -1.0977 -8.4419 19 1 5.5771 -0.3345 -8.0494 20 6 5.2890 -1.8143 -9.5724 21 7 4.4898 -2.7441 -10.0510 22 14 6.9175 -1.4580 -10.4155 23 1 7.0727 -2.3527 -11.5905 24 1 6.9436 -0.0425 -10.8637 25 1 8.0309 -1.6960 -9.4623 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8900 29 1 1.6767 -1.7489 1.2492 30 1 1.6766 -0.2075 2.1393 31 1 3.9333 -1.2353 2.1391 32 1 3.9337 0.3057 1.2487 33 1 3.7157 -2.4710 -0.0001 34 1 5.1695 -1.4442 -0.0004 35 1 3.9321 -1.2365 -2.1395 36 1 3.9332 0.3054 -1.2498 37 1 1.9646 0.9985 -2.5444 38 1 0.4437 0.0783 -2.4548 39 1 -0.2431 0.6919 -5.0679 40 1 1.0694 1.5833 -4.2612 41 1 1.0786 1.3943 -6.0311 42 1 1.2317 -0.9325 -6.9270 43 1 2.0284 -2.1468 -5.8981 44 1 4.0808 -0.7563 -5.8461 45 1 3.2841 0.4581 -6.8750 46 1 3.1385 -2.0438 -8.1768 47 1 4.7465 -3.2445 -10.8413 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753267272.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:50 Heat of formation + Delta-G solvation = -54.490249 kcal Electronic energy + Delta-G solvation = -22887.124860 eV Core-core repulsion = 19682.927870 eV Total energy + Delta-G solvation = -3204.196990 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.23645 -38.59864 -35.84389 -34.31958 -33.24741 -32.16631 -31.29789 -28.73021 -27.56340 -26.43236 -25.74964 -23.64264 -22.24995 -21.44311 -20.93737 -19.82780 -18.89129 -17.16229 -16.86663 -15.97399 -15.48749 -15.09203 -14.76239 -14.55504 -14.30886 -14.04868 -13.95122 -13.46426 -13.24803 -13.02419 -12.92658 -12.75820 -12.54344 -12.25833 -12.14469 -11.92516 -11.70880 -11.60826 -11.21194 -11.07032 -10.95331 -10.93378 -10.84652 -10.63347 -10.49380 -10.21422 -10.10521 -10.05180 -9.72189 -9.36789 -8.83836 -8.42500 -6.90056 -5.73145 -3.02315 2.83186 3.16767 3.47003 3.50939 3.52514 4.44834 4.48001 4.56608 4.64378 4.78606 4.91093 5.02137 5.08218 5.16326 5.23317 5.33012 5.36795 5.38317 5.44059 5.47529 5.55055 5.59074 5.63297 5.64205 5.67606 5.71692 5.78811 5.87234 5.89410 5.96251 6.07294 6.08053 6.13291 6.15357 6.17390 6.22604 6.46535 6.50058 6.62971 6.79034 6.96413 7.58973 7.72529 8.40067 8.45899 9.56202 10.12859 10.47970 11.49791 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024471 B = 0.003249 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.939027 B = 8615.363912 C = 9370.713970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.087 4.087 3 H 0.069 0.931 4 C -0.112 4.112 5 C -0.120 4.120 6 C -0.117 4.117 7 C -0.122 4.122 8 C -0.064 4.064 9 H 0.077 0.923 10 C -0.138 4.138 11 C 0.508 3.492 12 O -0.530 6.530 13 N -0.615 5.615 14 C 0.078 3.922 15 C 0.107 3.893 16 C 0.144 3.856 17 N -0.730 5.730 18 C -0.238 4.238 19 H 0.069 0.931 20 C -0.014 4.014 21 N -0.934 5.934 22 Si 0.909 3.091 23 H -0.291 1.291 24 H -0.286 1.286 25 H -0.286 1.286 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.086 0.914 36 H 0.053 0.947 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.054 0.946 40 H 0.068 0.932 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.084 0.916 44 H 0.022 0.978 45 H 0.016 0.984 46 H 0.384 0.616 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.480 8.597 22.216 26.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.106 4.106 3 H 0.087 0.913 4 C -0.150 4.150 5 C -0.157 4.157 6 C -0.155 4.155 7 C -0.159 4.159 8 C -0.083 4.083 9 H 0.096 0.904 10 C -0.177 4.177 11 C 0.296 3.704 12 O -0.406 6.406 13 N -0.349 5.349 14 C -0.065 4.065 15 C -0.015 4.015 16 C 0.015 3.985 17 N -0.375 5.375 18 C -0.370 4.370 19 H 0.087 0.913 20 C -0.210 4.210 21 N -0.583 5.583 22 Si 0.740 3.260 23 H -0.216 1.216 24 H -0.213 1.213 25 H -0.212 1.212 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.104 0.896 36 H 0.072 0.928 37 H 0.108 0.892 38 H 0.111 0.889 39 H 0.072 0.928 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.102 0.898 44 H 0.040 0.960 45 H 0.034 0.966 46 H 0.217 0.783 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.992 8.111 22.222 25.680 hybrid contribution 0.647 0.119 -0.756 1.002 sum -9.345 8.230 21.467 24.817 Atomic orbital electron populations 1.21924 0.95488 1.01923 1.01507 1.21172 0.95197 0.99548 0.94669 0.91275 1.21564 0.95658 1.00663 0.97080 1.21556 0.95578 1.00637 0.97976 1.21496 1.00080 0.99557 0.94352 1.21712 0.94521 1.00422 0.99236 1.20924 0.96108 0.99673 0.91615 0.90427 1.21860 1.02691 1.00191 0.92996 1.20697 0.79375 0.85889 0.84408 1.90695 1.39183 1.24628 1.86110 1.47864 1.55551 1.24986 1.06465 1.21790 0.95499 0.85990 1.03255 1.21684 0.97385 0.97037 0.85435 1.20895 0.92835 0.94666 0.90083 1.42210 1.22132 1.44062 1.29119 1.19167 0.95476 1.15858 1.06451 0.91280 1.24746 0.98718 0.98787 0.98735 1.69655 1.37196 1.26139 1.25296 0.86237 0.83566 0.77313 0.78900 1.21638 1.21269 1.21225 0.92640 0.92872 0.92424 0.92005 0.92287 0.92409 0.92238 0.92027 0.92253 0.89586 0.92823 0.89177 0.88937 0.92782 0.91285 0.90662 0.90677 0.89773 0.95992 0.96580 0.78277 0.93441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 8.85 37.16 0.33 -0.74 16 2 C -0.09 -0.71 2.25 -90.62 -0.20 -0.92 16 3 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 4 C -0.11 -0.90 5.20 -26.73 -0.14 -1.04 16 5 C -0.12 -1.03 5.92 -26.73 -0.16 -1.19 16 6 C -0.12 -1.24 5.92 -26.73 -0.16 -1.40 16 7 C -0.12 -1.45 4.94 -26.76 -0.13 -1.58 16 8 C -0.06 -0.68 1.36 -90.65 -0.12 -0.80 16 9 H 0.08 0.96 7.95 -51.93 -0.41 0.54 16 10 C -0.14 -1.41 3.51 -27.88 -0.10 -1.50 16 11 C 0.51 7.51 7.39 -10.98 -0.08 7.43 16 12 O -0.53 -10.02 13.54 5.55 0.08 -9.95 16 13 N -0.61 -8.78 2.87 -181.58 -0.52 -9.30 16 14 C 0.08 0.77 10.24 59.84 0.61 1.38 16 15 C 0.11 1.90 5.52 -4.04 -0.02 1.88 16 16 C 0.14 3.12 6.58 -4.04 -0.03 3.10 16 17 N -0.73 -19.52 5.60 -59.91 -0.34 -19.85 16 18 C -0.24 -6.97 9.99 -15.06 -0.15 -7.12 16 19 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 20 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 21 N -0.93 -28.99 13.06 55.49 0.72 -28.26 16 22 Si 0.91 22.99 29.55 -169.99 -5.02 17.97 16 23 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.37 6.32 -51.93 -0.33 0.04 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.09 1.32 5.95 -51.93 -0.31 1.01 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.09 0.80 7.40 -51.93 -0.38 0.41 16 38 H 0.09 0.76 6.14 -51.93 -0.32 0.44 16 39 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.52 6.44 -51.93 -0.33 0.19 16 41 H 0.07 0.75 8.07 -51.93 -0.42 0.33 16 42 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 43 H 0.08 1.66 7.42 -51.93 -0.39 1.27 16 44 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 46 H 0.38 10.62 7.67 -40.82 -0.31 10.31 16 47 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 362.56 15.07 5.46 5.46 Total: -1.00 -33.43 362.56 -8.73 -42.16 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -8.67 Total: 4.78 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: -0.45 Total: -3.02 kcal Atomic # 7 Polarization: -57.29 SS G_CDS: -0.13 Total: -57.42 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.08 Total: -9.95 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -5.02 Total: 17.97 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.43 -8.73 -42.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753267272.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.328 kcal (2) G-P(sol) polarization free energy of solvation -33.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds