Wall clock time and date at job start Tue Mar 31 2020 06:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47183 * 2 1 4 4 C 1.52988 * 109.47386 * 120.00468 * 2 1 3 5 5 C 1.53005 * 109.47126 * 59.99847 * 4 2 1 6 6 C 1.52991 * 109.47153 * 59.99858 * 5 4 2 7 7 C 1.52996 * 109.47464 * 300.00110 * 6 5 4 8 8 C 1.53000 * 109.46663 * 240.00696 * 2 1 3 9 9 H 1.08994 * 109.47037 * 180.02562 * 8 2 1 10 10 C 1.53003 * 109.47367 * 59.99789 * 8 2 1 11 11 C 1.50702 * 109.47196 * 174.99839 * 10 8 2 12 12 O 1.21283 * 119.99575 * 0.02562 * 11 10 8 13 13 N 1.34771 * 120.00335 * 179.97438 * 11 10 8 14 14 C 1.46506 * 119.99594 * 0.02562 * 13 11 10 15 15 C 1.46501 * 120.00308 * 180.02562 * 13 11 10 16 16 C 1.52995 * 109.46937 * 269.99876 * 15 13 11 17 17 N 1.46501 * 109.47328 * 179.97438 * 16 15 13 18 18 C 1.36933 * 120.00296 * 180.02562 * 17 16 15 19 19 H 1.08004 * 119.99844 * 359.97438 * 18 17 16 20 20 C 1.38816 * 119.99836 * 179.97438 * 18 17 16 21 21 N 1.31617 * 119.99823 * 179.97438 * 20 18 17 22 22 Si 1.86796 * 119.99971 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47082 * 89.99934 * 22 20 18 24 24 H 1.48502 * 109.46953 * 209.99421 * 22 20 18 25 25 H 1.48493 * 109.47332 * 329.99895 * 22 20 18 26 26 H 1.08997 * 109.47183 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46921 * 299.99849 * 1 2 3 28 28 H 1.08998 * 109.47391 * 59.99267 * 1 2 3 29 29 H 1.08998 * 109.47288 * 299.99708 * 4 2 1 30 30 H 1.09001 * 109.47456 * 179.97438 * 4 2 1 31 31 H 1.08994 * 109.46918 * 299.99981 * 5 4 2 32 32 H 1.09005 * 109.47200 * 180.02562 * 5 4 2 33 33 H 1.08997 * 109.47349 * 180.02562 * 6 5 4 34 34 H 1.09008 * 109.47077 * 60.00360 * 6 5 4 35 35 H 1.09001 * 109.47313 * 300.00506 * 7 6 5 36 36 H 1.08998 * 109.47531 * 180.02562 * 7 6 5 37 37 H 1.09000 * 109.46913 * 54.99841 * 10 8 2 38 38 H 1.08996 * 109.47080 * 294.99761 * 10 8 2 39 39 H 1.09001 * 109.47060 * 90.00388 * 14 13 11 40 40 H 1.09004 * 109.47073 * 209.99877 * 14 13 11 41 41 H 1.09000 * 109.47212 * 329.99960 * 14 13 11 42 42 H 1.09000 * 109.46877 * 29.99967 * 15 13 11 43 43 H 1.09000 * 109.47251 * 150.00072 * 15 13 11 44 44 H 1.08999 * 109.47267 * 300.00296 * 16 15 13 45 45 H 1.09000 * 109.46990 * 60.00037 * 16 15 13 46 46 H 0.97002 * 119.99333 * 359.97438 * 17 16 15 47 47 H 0.96993 * 120.00224 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.5300 -2.1638 1.2490 6 6 2.0399 -2.8849 -0.0003 7 6 1.5299 -2.1637 -1.2494 8 6 2.0399 -0.7211 -1.2494 9 1 3.1299 -0.7216 -1.2492 10 6 1.5298 0.0002 -2.4985 11 6 2.1307 -0.6350 -3.7260 12 8 2.8915 -1.5726 -3.6128 13 7 1.8217 -0.1618 -4.9495 14 6 0.9022 0.9705 -5.0862 15 6 2.4054 -0.7796 -6.1428 16 6 3.7226 -0.0812 -6.4862 17 7 4.3067 -0.6994 -7.6791 18 6 5.4956 -0.2376 -8.1772 19 1 6.0027 0.5827 -7.6909 20 6 6.0492 -0.8238 -9.3072 21 7 7.1918 -0.3796 -9.7863 22 14 5.1718 -2.2420 -10.1486 23 1 4.2477 -1.7093 -11.1818 24 1 6.1724 -3.1318 -10.7910 25 1 4.3981 -3.0124 -9.1423 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.6768 -0.2075 2.1391 30 1 3.1301 -0.7217 1.2488 31 1 0.4401 -2.1638 1.2491 32 1 1.8931 -2.6776 2.1392 33 1 1.6762 -3.9125 -0.0006 34 1 3.1300 -2.8850 -0.0003 35 1 0.4399 -2.1636 -1.2494 36 1 1.8928 -2.6777 -2.1395 37 1 1.8182 1.0505 -2.4548 38 1 0.4436 -0.0767 -2.5444 39 1 1.4679 1.9021 -5.0689 40 1 0.3642 0.8897 -6.0308 41 1 0.1904 0.9622 -4.2607 42 1 2.5936 -1.8358 -5.9499 43 1 1.7130 -0.6807 -6.9788 44 1 3.5344 0.9749 -6.6789 45 1 4.4150 -0.1802 -5.6501 46 1 3.8514 -1.4364 -8.1156 47 1 7.5784 -0.7888 -10.5760 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753267273.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:53 Heat of formation + Delta-G solvation = -68.515363 kcal Electronic energy + Delta-G solvation = -22963.491341 eV Core-core repulsion = 19758.686177 eV Total energy + Delta-G solvation = -3204.805164 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.36583 -39.74141 -37.46588 -36.13326 -33.99233 -33.47837 -32.53362 -30.57721 -28.69938 -27.48967 -26.97592 -25.19666 -23.43297 -23.13156 -22.32423 -20.25451 -19.57068 -19.30311 -18.01977 -17.25957 -16.79158 -16.54918 -16.38379 -15.81092 -15.52237 -15.17910 -15.08356 -14.83180 -14.68368 -14.30317 -13.91747 -13.75683 -13.54696 -13.38383 -13.36648 -13.11515 -12.92179 -12.78988 -12.63116 -12.41961 -12.30646 -12.15746 -12.14152 -11.89455 -11.86924 -11.60563 -11.11474 -11.04405 -11.01741 -10.77954 -10.50577 -9.65704 -9.40154 -8.08337 -5.44371 1.35329 1.40239 1.47461 1.68024 2.03125 2.44770 3.22348 3.54470 3.69649 3.76925 3.81830 3.95255 4.13201 4.17231 4.23189 4.32601 4.35563 4.43425 4.51280 4.51787 4.53480 4.60451 4.67250 4.78864 4.80080 4.84343 4.93423 4.96500 4.99727 5.04005 5.07928 5.13293 5.22583 5.23607 5.30674 5.35773 5.43791 5.50277 5.54548 5.62886 5.68324 5.73665 6.14714 6.45951 6.99997 7.25445 7.73389 7.95067 9.13184 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028400 B = 0.003206 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.694738 B = 8730.998003 C = 9069.450017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.082 4.082 3 H 0.076 0.924 4 C -0.115 4.115 5 C -0.116 4.116 6 C -0.119 4.119 7 C -0.117 4.117 8 C -0.065 4.065 9 H 0.044 0.956 10 C -0.125 4.125 11 C 0.499 3.501 12 O -0.581 6.581 13 N -0.615 5.615 14 C 0.070 3.930 15 C 0.117 3.883 16 C 0.151 3.849 17 N -0.755 5.755 18 C -0.244 4.244 19 H 0.051 0.949 20 C -0.062 4.062 21 N -0.983 5.983 22 Si 0.962 3.038 23 H -0.267 1.267 24 H -0.293 1.293 25 H -0.255 1.255 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.048 0.952 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.041 0.959 35 H 0.073 0.927 36 H 0.046 0.954 37 H 0.112 0.888 38 H 0.124 0.876 39 H 0.061 0.939 40 H 0.085 0.915 41 H 0.103 0.897 42 H 0.062 0.938 43 H 0.102 0.898 44 H 0.033 0.967 45 H -0.001 1.001 46 H 0.368 0.632 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.732 1.573 22.392 31.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.100 4.100 3 H 0.094 0.906 4 C -0.153 4.153 5 C -0.153 4.153 6 C -0.157 4.157 7 C -0.154 4.154 8 C -0.084 4.084 9 H 0.063 0.937 10 C -0.164 4.164 11 C 0.289 3.711 12 O -0.461 6.461 13 N -0.348 5.348 14 C -0.071 4.071 15 C -0.007 4.007 16 C 0.023 3.977 17 N -0.402 5.402 18 C -0.375 4.375 19 H 0.069 0.931 20 C -0.254 4.254 21 N -0.633 5.633 22 Si 0.788 3.212 23 H -0.193 1.193 24 H -0.219 1.219 25 H -0.180 1.180 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.094 0.906 30 H 0.067 0.933 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.060 0.940 35 H 0.091 0.909 36 H 0.065 0.935 37 H 0.130 0.870 38 H 0.141 0.859 39 H 0.080 0.920 40 H 0.104 0.896 41 H 0.121 0.879 42 H 0.081 0.919 43 H 0.121 0.879 44 H 0.051 0.949 45 H 0.017 0.983 46 H 0.202 0.798 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -22.182 1.248 22.456 31.589 hybrid contribution 0.740 -0.814 -1.011 1.494 sum -21.442 0.434 21.444 30.328 Atomic orbital electron populations 1.21991 0.93893 1.02349 1.02539 1.21102 0.97037 0.98871 0.93037 0.90573 1.21567 0.99991 0.95797 0.97928 1.21552 1.01390 0.95536 0.96835 1.21499 0.99806 0.99048 0.95319 1.21656 1.00630 0.95393 0.97770 1.20881 0.99154 0.94986 0.93381 0.93725 1.21877 1.03132 1.01388 0.90014 1.21612 0.80773 0.83037 0.85667 1.90685 1.37892 1.30693 1.86793 1.47966 1.46799 1.34832 1.05214 1.22148 0.92749 0.87183 1.05059 1.21406 0.94098 0.97147 0.88087 1.20949 0.93387 0.96011 0.87332 1.42526 1.24541 1.41027 1.32060 1.18987 0.97547 1.13225 1.07724 0.93115 1.25595 0.97897 1.02738 0.99169 1.69890 1.21143 1.46100 1.26118 0.85314 0.78014 0.79092 0.78803 1.19291 1.21949 1.17963 0.92219 0.91898 0.91471 0.90584 0.93327 0.90668 0.91926 0.92215 0.94001 0.90867 0.93541 0.87001 0.85860 0.92019 0.89610 0.87854 0.91905 0.87943 0.94924 0.98312 0.79812 0.93051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 8.15 71.98 0.59 -0.86 16 2 C -0.08 -1.11 2.72 -10.80 -0.03 -1.14 16 3 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 4 C -0.12 -1.62 5.45 30.59 0.17 -1.45 16 5 C -0.12 -1.68 5.65 30.59 0.17 -1.50 16 6 C -0.12 -2.33 5.92 30.59 0.18 -2.15 16 7 C -0.12 -2.48 4.67 30.59 0.14 -2.34 16 8 C -0.06 -1.27 1.61 -10.79 -0.02 -1.29 16 9 H 0.04 1.17 7.95 -2.39 -0.02 1.15 16 10 C -0.12 -2.14 3.22 29.85 0.10 -2.04 16 11 C 0.50 13.78 7.39 87.66 0.65 14.42 16 12 O -0.58 -22.06 13.54 -3.04 -0.04 -22.10 16 13 N -0.62 -15.50 2.87 -846.74 -2.43 -17.94 16 14 C 0.07 1.01 10.29 127.77 1.31 2.33 16 15 C 0.12 3.73 5.56 86.38 0.48 4.21 16 16 C 0.15 6.32 6.58 86.38 0.57 6.89 16 17 N -0.75 -37.87 5.41 -343.45 -1.86 -39.73 16 18 C -0.24 -14.81 10.47 84.04 0.88 -13.93 16 19 H 0.05 3.39 8.06 -2.91 -0.02 3.36 16 20 C -0.06 -3.82 5.50 84.86 0.47 -3.35 16 21 N -0.98 -64.87 13.97 21.65 0.30 -64.57 16 22 Si 0.96 46.64 27.74 68.60 1.90 48.54 16 23 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 24 H -0.29 -14.30 7.11 99.48 0.71 -13.60 16 25 H -0.25 -11.35 6.52 99.48 0.65 -10.70 16 26 H 0.06 0.62 4.81 -2.39 -0.01 0.61 16 27 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.07 0.49 6.54 -2.39 -0.02 0.48 16 29 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.07 0.92 6.43 -2.39 -0.02 0.91 16 32 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 33 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.04 0.96 8.14 -2.38 -0.02 0.94 16 35 H 0.07 1.26 6.43 -2.39 -0.02 1.25 16 36 H 0.05 1.33 5.95 -2.39 -0.01 1.32 16 37 H 0.11 1.50 8.11 -2.39 -0.02 1.48 16 38 H 0.12 1.36 5.97 -2.39 -0.01 1.35 16 39 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.09 1.06 7.89 -2.38 -0.02 1.04 16 41 H 0.10 0.81 6.44 -2.39 -0.02 0.79 16 42 H 0.06 2.28 7.42 -2.39 -0.02 2.26 16 43 H 0.10 2.71 7.89 -2.39 -0.02 2.69 16 44 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 46 H 0.37 17.24 5.53 -92.71 -0.51 16.72 16 47 H 0.26 16.23 8.31 -92.71 -0.77 15.46 16 Total: -1.00 -78.89 352.61 3.90 -74.99 By element: Atomic # 1 Polarization: 22.63 SS G_CDS: 0.37 Total: 23.00 kcal Atomic # 6 Polarization: -7.85 SS G_CDS: 5.66 Total: -2.19 kcal Atomic # 7 Polarization: -118.25 SS G_CDS: -3.99 Total: -122.24 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: -0.04 Total: -22.10 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 1.90 Total: 48.54 kcal Total: -78.89 3.90 -74.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753267273.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.477 kcal (2) G-P(sol) polarization free energy of solvation -78.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds