Wall clock time and date at job start Tue Mar 31 2020 06:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 110.05842 * 2 1 4 4 C 1.54367 * 110.04481 * 238.52507 * 2 1 3 5 5 C 1.54890 * 104.19685 * 217.09159 * 4 2 1 6 6 C 1.54884 * 102.74835 * 37.96697 * 5 4 2 7 7 H 1.09005 * 110.48688 * 80.74038 * 6 5 4 8 8 C 1.52998 * 110.48991 * 203.37884 * 6 5 4 9 9 C 1.50699 * 109.47240 * 289.78153 * 8 6 5 10 10 O 1.21284 * 119.99912 * 359.97438 * 9 8 6 11 11 N 1.34777 * 120.00311 * 179.97438 * 9 8 6 12 12 C 1.46497 * 119.99728 * 359.97438 * 11 9 8 13 13 C 1.46502 * 120.00208 * 179.97438 * 11 9 8 14 14 C 1.52998 * 109.46910 * 90.00218 * 13 11 9 15 15 C 1.53006 * 109.46850 * 180.02562 * 14 13 11 16 16 N 1.46500 * 109.46755 * 179.97438 * 15 14 13 17 17 C 1.36942 * 119.99491 * 179.97438 * 16 15 14 18 18 H 1.07995 * 120.00341 * 359.97438 * 17 16 15 19 19 C 1.38817 * 119.99815 * 180.02562 * 17 16 15 20 20 N 1.31619 * 119.99754 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00005 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47268 * 59.99522 * 21 19 17 23 23 H 1.48496 * 109.47150 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.46783 * 299.99437 * 21 19 17 25 25 C 1.53876 * 110.03131 * 121.41369 * 2 1 3 26 26 H 1.09000 * 109.47073 * 298.58765 * 1 2 3 27 27 H 1.08995 * 109.47259 * 58.58072 * 1 2 3 28 28 H 1.08993 * 109.47201 * 178.58767 * 1 2 3 29 29 H 1.09002 * 110.46302 * 98.42487 * 4 2 1 30 30 H 1.09000 * 110.51365 * 335.78312 * 4 2 1 31 31 H 1.09007 * 110.75694 * 279.65389 * 5 4 2 32 32 H 1.08998 * 110.91634 * 156.35721 * 5 4 2 33 33 H 1.09002 * 109.47265 * 49.77349 * 8 6 5 34 34 H 1.08995 * 109.47439 * 169.77757 * 8 6 5 35 35 H 1.08999 * 109.47807 * 90.00231 * 12 11 9 36 36 H 1.09004 * 109.47392 * 209.99970 * 12 11 9 37 37 H 1.08997 * 109.47191 * 329.99309 * 12 11 9 38 38 H 1.08997 * 109.47016 * 209.99979 * 13 11 9 39 39 H 1.09005 * 109.47034 * 329.99690 * 13 11 9 40 40 H 1.08997 * 109.47086 * 299.99718 * 14 13 11 41 41 H 1.08991 * 109.47521 * 59.99857 * 14 13 11 42 42 H 1.08997 * 109.46896 * 299.99650 * 15 14 13 43 43 H 1.09000 * 109.47454 * 59.99804 * 15 14 13 44 44 H 0.96999 * 120.00087 * 0.02562 * 16 15 14 45 45 H 0.96997 * 119.99727 * 180.02562 * 20 19 17 46 46 H 1.09002 * 110.03428 * 359.97438 * 25 2 1 47 47 H 1.08995 * 110.02995 * 238.61756 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0591 -0.7572 -1.2368 5 6 3.3145 -1.5015 -0.7182 6 6 2.8881 -1.9405 0.7046 7 1 2.2783 -2.8428 0.6587 8 6 4.1179 -2.1682 1.5859 9 6 4.8453 -3.4044 1.1235 10 8 4.4216 -4.0409 0.1821 11 7 5.9668 -3.8027 1.7561 12 6 6.4790 -3.0335 2.8929 13 6 6.6737 -5.0047 1.3070 14 6 7.7121 -4.6210 0.2510 15 6 8.4499 -5.8765 -0.2186 16 7 9.4438 -5.5092 -1.2302 17 6 10.2307 -6.4748 -1.7991 18 1 10.1190 -7.5070 -1.5017 19 6 11.1729 -6.1267 -2.7573 20 7 11.3095 -4.8687 -3.1193 21 14 12.2459 -7.4439 -3.5338 22 1 11.3864 -8.4407 -4.2213 23 1 13.1627 -6.8177 -4.5199 24 1 13.0412 -8.1204 -2.4779 25 6 2.0571 -0.7535 1.2338 26 1 -0.3633 0.4917 0.9024 27 1 -0.3633 0.5357 -0.8769 28 1 -0.3633 -1.0273 -0.0253 29 1 2.3303 -0.0557 -2.0258 30 1 1.3154 -1.4683 -1.5964 31 1 4.1716 -0.8294 -0.6744 32 1 3.5371 -2.3688 -1.3396 33 1 4.7821 -1.3071 1.5124 34 1 3.8039 -2.2975 2.6216 35 1 6.0416 -3.4141 3.8159 36 1 7.5638 -3.1304 2.9380 37 1 6.2129 -1.9836 2.7706 38 1 7.1739 -5.4706 2.1560 39 1 5.9594 -5.7066 0.8762 40 1 7.2119 -4.1552 -0.5980 41 1 8.4262 -3.9193 0.6817 42 1 8.9500 -6.3428 0.6302 43 1 7.7355 -6.5780 -0.6495 44 1 9.5449 -4.5820 -1.4965 45 1 11.9676 -4.6255 -3.7891 46 1 1.2229 -1.1188 1.8328 47 1 2.6859 -0.0950 1.8329 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754390061.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:36 Heat of formation + Delta-G solvation = -55.010788 kcal Electronic energy + Delta-G solvation = -22253.159363 eV Core-core repulsion = 19048.939801 eV Total energy + Delta-G solvation = -3204.219562 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.15572 -38.45723 -36.08506 -34.76832 -32.96995 -32.07238 -30.10527 -29.50348 -27.44864 -26.89434 -25.23118 -24.08799 -22.59734 -20.96234 -20.52102 -19.62841 -19.04018 -17.09657 -17.00617 -16.35331 -15.72051 -15.35902 -15.05940 -14.48906 -14.37098 -13.91491 -13.62753 -13.36864 -13.34956 -13.18545 -12.99116 -12.90137 -12.54566 -12.51661 -12.04546 -11.88832 -11.68161 -11.20231 -10.95775 -10.88666 -10.87124 -10.83202 -10.79197 -10.70761 -10.67677 -10.52787 -10.34345 -10.07224 -9.70077 -9.58863 -8.81931 -8.60369 -6.87013 -5.71512 -3.00093 2.69725 3.02611 3.47626 3.51330 3.52912 4.30021 4.39561 4.50669 4.63819 4.66449 4.89603 4.95581 5.01862 5.19973 5.21735 5.28561 5.31979 5.33440 5.37373 5.46054 5.48789 5.50613 5.58200 5.60801 5.62576 5.72474 5.75164 5.79545 5.84209 5.92677 5.97185 6.01673 6.14116 6.22248 6.26582 6.35165 6.37510 6.43977 6.60049 6.91480 6.94135 7.41275 7.73862 8.25104 8.47619 9.58161 10.17161 10.51873 11.51633 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023793 B = 0.002784 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.536146 B =10055.284060 C =10813.549920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.098 4.098 3 H 0.069 0.931 4 C -0.121 4.121 5 C -0.119 4.119 6 C -0.076 4.076 7 H 0.082 0.918 8 C -0.132 4.132 9 C 0.509 3.491 10 O -0.532 6.532 11 N -0.619 5.619 12 C 0.077 3.923 13 C 0.119 3.881 14 C -0.138 4.138 15 C 0.156 3.844 16 N -0.734 5.734 17 C -0.239 4.239 18 H 0.070 0.930 19 C -0.016 4.016 20 N -0.935 5.935 21 Si 0.909 3.091 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C -0.117 4.117 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.054 0.946 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.065 0.935 41 H 0.060 0.940 42 H 0.018 0.982 43 H 0.020 0.980 44 H 0.383 0.617 45 H 0.255 0.745 46 H 0.064 0.936 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.749 11.135 14.166 26.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 H 0.087 0.913 4 C -0.159 4.159 5 C -0.156 4.156 6 C -0.095 4.095 7 H 0.100 0.900 8 C -0.172 4.172 9 C 0.297 3.703 10 O -0.408 6.408 11 N -0.352 5.352 12 C -0.066 4.066 13 C -0.004 4.004 14 C -0.177 4.177 15 C 0.028 3.972 16 N -0.378 5.378 17 C -0.370 4.370 18 H 0.088 0.912 19 C -0.212 4.212 20 N -0.584 5.584 21 Si 0.740 3.260 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.154 4.154 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.110 0.890 34 H 0.107 0.893 35 H 0.073 0.927 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.101 0.899 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.035 0.965 43 H 0.038 0.962 44 H 0.217 0.783 45 H 0.065 0.935 46 H 0.082 0.918 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -19.903 10.635 13.631 26.364 hybrid contribution 0.865 -0.292 -0.415 1.003 sum -19.038 10.344 13.216 25.379 Atomic orbital electron populations 1.21889 0.95251 1.01756 1.01312 1.21758 0.95463 0.99290 0.95098 0.91263 1.22466 0.97687 0.98820 0.96885 1.22561 0.96970 1.00191 0.95902 1.21749 0.94658 0.98431 0.94657 0.90002 1.21788 0.97760 0.96544 1.01091 1.20711 0.80361 0.86483 0.82699 1.90708 1.66328 1.56170 1.27590 1.47951 1.26201 1.28263 1.32824 1.21796 1.00560 0.95987 0.88259 1.21470 0.94886 0.86304 0.97745 1.22042 0.97386 0.99708 0.98539 1.20544 0.91017 0.93718 0.91902 1.42351 1.41371 1.08101 1.45930 1.19211 1.11898 0.89627 1.16248 0.91205 1.24758 1.00125 0.96297 1.00009 1.69658 1.38104 1.15434 1.35211 0.86238 0.80195 0.80742 0.78856 1.21248 1.21687 1.21280 1.22307 0.99174 0.96668 0.97297 0.92949 0.92875 0.92588 0.91905 0.91572 0.91964 0.90297 0.88976 0.89251 0.92720 0.90688 0.91167 0.90697 0.89850 0.91626 0.92117 0.96459 0.96234 0.78336 0.93498 0.91762 0.91844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 8.85 37.16 0.33 -0.68 16 2 C -0.10 -0.77 3.51 -89.45 -0.31 -1.08 16 3 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 4 C -0.12 -1.13 6.36 -25.02 -0.16 -1.29 16 5 C -0.12 -1.32 5.76 -24.74 -0.14 -1.46 16 6 C -0.08 -0.75 2.44 -88.97 -0.22 -0.96 16 7 H 0.08 0.93 7.90 -51.93 -0.41 0.52 16 8 C -0.13 -1.21 3.60 -27.88 -0.10 -1.31 16 9 C 0.51 6.75 7.49 -10.99 -0.08 6.67 16 10 O -0.53 -9.18 14.31 5.55 0.08 -9.10 16 11 N -0.62 -7.55 2.87 -181.57 -0.52 -8.07 16 12 C 0.08 0.63 10.24 59.85 0.61 1.25 16 13 C 0.12 1.68 5.41 -4.04 -0.02 1.66 16 14 C -0.14 -2.42 5.65 -26.73 -0.15 -2.57 16 15 C 0.16 3.34 6.26 -4.04 -0.03 3.31 16 16 N -0.73 -19.75 5.60 -59.91 -0.34 -20.09 16 17 C -0.24 -6.99 9.99 -15.06 -0.15 -7.14 16 18 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 19 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 20 N -0.94 -29.27 13.06 55.49 0.72 -28.55 16 21 Si 0.91 23.05 29.55 -169.99 -5.02 18.03 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 23 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 C -0.12 -0.90 6.03 -25.61 -0.15 -1.05 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.40 8.12 -51.93 -0.42 -0.02 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.63 7.84 -51.93 -0.41 0.22 16 31 H 0.06 0.68 7.97 -51.93 -0.41 0.27 16 32 H 0.08 1.09 7.28 -51.93 -0.38 0.71 16 33 H 0.09 0.74 7.27 -51.93 -0.38 0.36 16 34 H 0.09 0.63 8.11 -51.93 -0.42 0.21 16 35 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.07 0.61 8.07 -51.93 -0.42 0.19 16 37 H 0.07 0.45 6.44 -51.93 -0.33 0.12 16 38 H 0.07 0.91 8.07 -51.93 -0.42 0.49 16 39 H 0.08 1.30 7.42 -51.93 -0.39 0.91 16 40 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 41 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.38 10.83 7.67 -40.82 -0.31 10.51 16 45 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 46 H 0.06 0.46 7.67 -51.93 -0.40 0.06 16 47 H 0.06 0.43 7.84 -51.93 -0.41 0.02 16 LS Contribution 370.89 15.07 5.59 5.59 Total: -1.00 -33.91 370.89 -9.02 -42.92 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -8.86 Total: 4.52 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: -0.67 Total: -5.25 kcal Atomic # 7 Polarization: -56.58 SS G_CDS: -0.13 Total: -56.71 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.08 Total: -9.10 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -5.02 Total: 18.03 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.91 -9.02 -42.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754390061.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.088 kcal (2) G-P(sol) polarization free energy of solvation -33.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds