Wall clock time and date at job start Tue Mar 31 2020 06:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 110.42816 * 2 1 4 4 C 1.54262 * 110.48497 * 122.68158 * 2 1 3 5 5 C 1.53883 * 106.59409 * 142.29201 * 4 2 1 6 6 C 1.54266 * 106.59888 * 359.97438 * 5 4 2 7 7 H 1.08996 * 110.48366 * 95.07366 * 6 5 4 8 8 C 1.53007 * 110.59687 * 217.65646 * 6 5 4 9 9 C 1.50700 * 109.46911 * 289.84247 * 8 6 5 10 10 O 1.21277 * 120.00185 * 0.02562 * 9 8 6 11 11 N 1.34778 * 119.99399 * 180.02562 * 9 8 6 12 12 C 1.46498 * 120.00193 * 359.97438 * 11 9 8 13 13 C 1.46504 * 119.99706 * 179.97438 * 11 9 8 14 14 C 1.53001 * 109.46913 * 89.99778 * 13 11 9 15 15 C 1.53005 * 109.46975 * 180.02562 * 14 13 11 16 16 N 1.46495 * 109.47100 * 179.97438 * 15 14 13 17 17 C 1.36938 * 119.99704 * 179.97438 * 16 15 14 18 18 H 1.08003 * 120.00273 * 0.02562 * 17 16 15 19 19 C 1.38812 * 119.99645 * 180.02562 * 17 16 15 20 20 N 1.31621 * 120.00183 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99859 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47072 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46815 * 119.99818 * 21 19 17 24 24 H 1.48500 * 109.47122 * 239.99973 * 21 19 17 25 25 C 1.54884 * 104.19554 * 336.39056 * 6 5 4 26 26 H 1.09001 * 109.47002 * 182.53841 * 1 2 3 27 27 H 1.08993 * 109.46955 * 302.54278 * 1 2 3 28 28 H 1.09000 * 109.47050 * 62.54107 * 1 2 3 29 29 H 1.09000 * 110.03396 * 261.57013 * 4 2 1 30 30 H 1.08997 * 110.03531 * 23.01277 * 4 2 1 31 31 H 1.09004 * 110.02932 * 240.71425 * 5 4 2 32 32 H 1.08994 * 110.07040 * 119.30838 * 5 4 2 33 33 H 1.08999 * 109.47149 * 49.84244 * 8 6 5 34 34 H 1.09000 * 109.46599 * 169.84182 * 8 6 5 35 35 H 1.08999 * 109.47083 * 90.00589 * 12 11 9 36 36 H 1.09001 * 109.47117 * 209.99818 * 12 11 9 37 37 H 1.08994 * 109.47273 * 329.99827 * 12 11 9 38 38 H 1.08995 * 109.46827 * 210.00234 * 13 11 9 39 39 H 1.09000 * 109.47037 * 330.00247 * 13 11 9 40 40 H 1.08999 * 109.47305 * 299.99687 * 14 13 11 41 41 H 1.09000 * 109.46886 * 60.00376 * 14 13 11 42 42 H 1.09003 * 109.47224 * 300.00093 * 15 14 13 43 43 H 1.08997 * 109.46983 * 59.99885 * 15 14 13 44 44 H 0.97000 * 119.99975 * 0.02562 * 16 15 14 45 45 H 0.96997 * 119.99691 * 179.97438 * 20 19 17 46 46 H 1.09002 * 110.75724 * 279.62379 * 25 6 5 47 47 H 1.09004 * 110.91415 * 156.32958 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9105 1.0215 0.0000 4 6 2.0699 -0.7803 1.2163 5 6 3.3167 -1.5413 0.7321 6 6 3.4904 -1.1974 -0.7617 7 1 4.1893 -0.3700 -0.8838 8 6 3.9703 -2.4218 -1.5437 9 6 5.3957 -2.7323 -1.1656 10 8 5.9709 -2.0425 -0.3507 11 7 6.0311 -3.7765 -1.7333 12 6 5.3361 -4.6100 -2.7173 13 6 7.4170 -4.0781 -1.3662 14 6 7.4317 -5.0434 -0.1793 15 6 8.8791 -5.3578 0.2045 16 7 8.8932 -6.2816 1.3414 17 6 10.0856 -6.7078 1.8625 18 1 11.0157 -6.3626 1.4356 19 6 10.0990 -7.5836 2.9394 20 7 8.9655 -8.0046 3.4593 21 14 11.7257 -8.1645 3.6508 22 1 12.8450 -7.5494 2.8932 23 1 11.8139 -7.7619 5.0774 24 1 11.8111 -9.6434 3.5475 25 6 2.0717 -0.7813 -1.2231 26 1 -0.3633 -1.0267 0.0455 27 1 -0.3633 0.5528 0.8663 28 1 -0.3633 0.4739 -0.9119 29 1 2.3412 -0.0882 2.0135 30 1 1.3177 -1.4842 1.5722 31 1 3.1693 -2.6146 0.8531 32 1 4.1932 -1.2193 1.2942 33 1 3.3369 -3.2763 -1.3054 34 1 3.9146 -2.2150 -2.6124 35 1 5.4970 -4.2039 -3.7159 36 1 5.7254 -5.6271 -2.6718 37 1 4.2688 -4.6194 -2.4964 38 1 7.9258 -4.5368 -2.2140 39 1 7.9288 -3.1559 -1.0909 40 1 6.9229 -4.5846 0.6685 41 1 6.9199 -5.9655 -0.4546 42 1 9.3883 -5.8164 -0.6431 43 1 9.3905 -4.4355 0.4799 44 1 8.0578 -6.5919 1.7246 45 1 8.9749 -8.6169 4.2116 46 1 1.4577 -1.6593 -1.4239 47 1 2.1213 -0.1375 -2.1013 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754390063.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:42 Heat of formation + Delta-G solvation = -55.380080 kcal Electronic energy + Delta-G solvation = -22239.266670 eV Core-core repulsion = 19035.031094 eV Total energy + Delta-G solvation = -3204.235576 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.15407 -38.43482 -36.08666 -34.77213 -32.98937 -32.08530 -30.11439 -29.49290 -27.51684 -26.89617 -25.23123 -24.05841 -22.60185 -20.93973 -20.32492 -19.98579 -18.83934 -17.04191 -16.99317 -16.49157 -15.93155 -15.42794 -14.61645 -14.55675 -14.32535 -14.10866 -13.63660 -13.43517 -13.30089 -13.19866 -12.99097 -12.93009 -12.55506 -12.38067 -12.09821 -11.87797 -11.72678 -11.20745 -11.03018 -10.92441 -10.89308 -10.83010 -10.78691 -10.74950 -10.66719 -10.44914 -10.34955 -10.01312 -9.71173 -9.59396 -8.83241 -8.60555 -6.87188 -5.72119 -3.00623 2.69736 3.02487 3.46367 3.51591 3.54224 4.29557 4.36767 4.47246 4.63561 4.69320 4.91012 4.95163 5.03513 5.19961 5.21713 5.25261 5.31847 5.34629 5.39150 5.39630 5.49402 5.51934 5.53650 5.60525 5.62338 5.70551 5.74698 5.75565 5.86014 5.93048 5.97260 6.03071 6.13785 6.17128 6.30089 6.34802 6.37485 6.43648 6.59852 6.91189 6.93835 7.41116 7.74498 8.24938 8.46959 9.57728 10.16696 10.51345 11.51141 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023394 B = 0.002785 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.617587 B =10052.300231 C =10815.862231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 H 0.072 0.928 4 C -0.121 4.121 5 C -0.116 4.116 6 C -0.076 4.076 7 H 0.082 0.918 8 C -0.132 4.132 9 C 0.509 3.491 10 O -0.532 6.532 11 N -0.619 5.619 12 C 0.077 3.923 13 C 0.119 3.881 14 C -0.138 4.138 15 C 0.156 3.844 16 N -0.734 5.734 17 C -0.237 4.237 18 H 0.071 0.929 19 C -0.017 4.017 20 N -0.935 5.935 21 Si 0.908 3.092 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.292 1.292 25 C -0.116 4.116 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.054 0.946 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.065 0.935 41 H 0.060 0.940 42 H 0.018 0.982 43 H 0.020 0.980 44 H 0.383 0.617 45 H 0.254 0.746 46 H 0.068 0.932 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.727 13.929 -14.652 26.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 H 0.091 0.909 4 C -0.159 4.159 5 C -0.154 4.154 6 C -0.095 4.095 7 H 0.100 0.900 8 C -0.172 4.172 9 C 0.297 3.703 10 O -0.408 6.408 11 N -0.353 5.353 12 C -0.066 4.066 13 C -0.004 4.004 14 C -0.177 4.177 15 C 0.028 3.972 16 N -0.378 5.378 17 C -0.368 4.368 18 H 0.089 0.911 19 C -0.213 4.213 20 N -0.584 5.584 21 Si 0.739 3.261 22 H -0.205 1.205 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.153 4.153 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.110 0.890 34 H 0.108 0.892 35 H 0.073 0.927 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.101 0.899 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.036 0.964 43 H 0.038 0.962 44 H 0.217 0.783 45 H 0.064 0.936 46 H 0.086 0.914 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -17.229 14.277 -14.197 26.500 hybrid contribution 0.586 -0.710 0.519 1.057 sum -16.643 13.567 -13.678 25.459 Atomic orbital electron populations 1.21810 0.95181 1.01731 1.01407 1.21957 0.95237 0.99307 0.95139 0.90911 1.22240 0.97439 0.98814 0.97410 1.22158 0.97952 0.99927 0.95335 1.21747 0.96224 0.96651 0.94871 0.89999 1.21792 0.93577 0.99994 1.01812 1.20717 0.88718 0.79928 0.80940 1.90711 1.67855 1.49306 1.32900 1.47952 1.14478 1.29921 1.42901 1.21796 0.97550 0.95723 0.91529 1.21469 0.81085 1.00197 0.97653 1.22044 0.99201 0.98644 0.97790 1.20544 0.92609 0.93224 0.90809 1.42367 1.06423 1.53633 1.35351 1.19303 0.86067 1.21057 1.10393 0.91093 1.24761 0.96924 1.00524 0.99049 1.69679 1.24223 1.37507 1.26954 0.86097 0.83030 0.78163 0.78809 1.20540 1.21857 1.21888 1.22642 0.95599 0.99722 0.97373 0.92646 0.92828 0.92859 0.92058 0.91923 0.92209 0.90880 0.88977 0.89205 0.92714 0.90691 0.91164 0.90691 0.89855 0.91634 0.92116 0.96444 0.96227 0.78341 0.93604 0.91356 0.91732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 9.14 37.16 0.34 -0.62 16 2 C -0.10 -0.77 3.46 -88.95 -0.31 -1.08 16 3 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 4 C -0.12 -1.12 6.37 -25.61 -0.16 -1.28 16 5 C -0.12 -1.30 5.58 -25.61 -0.14 -1.44 16 6 C -0.08 -0.75 2.44 -88.96 -0.22 -0.96 16 7 H 0.08 0.93 7.90 -51.93 -0.41 0.52 16 8 C -0.13 -1.21 3.65 -27.88 -0.10 -1.31 16 9 C 0.51 6.76 7.49 -10.98 -0.08 6.68 16 10 O -0.53 -9.22 14.58 5.56 0.08 -9.14 16 11 N -0.62 -7.56 2.87 -181.58 -0.52 -8.08 16 12 C 0.08 0.63 10.24 59.85 0.61 1.25 16 13 C 0.12 1.68 5.41 -4.04 -0.02 1.66 16 14 C -0.14 -2.42 5.65 -26.73 -0.15 -2.57 16 15 C 0.16 3.34 6.26 -4.04 -0.03 3.31 16 16 N -0.73 -19.75 5.60 -59.91 -0.34 -20.09 16 17 C -0.24 -6.94 9.99 -15.06 -0.15 -7.09 16 18 H 0.07 2.01 7.83 -52.48 -0.41 1.60 16 19 C -0.02 -0.51 5.50 -17.43 -0.10 -0.60 16 20 N -0.93 -29.26 13.06 55.49 0.72 -28.54 16 21 Si 0.91 23.06 29.55 -169.99 -5.02 18.03 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.29 -7.43 7.11 56.52 0.40 -7.02 16 24 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 25 C -0.12 -0.88 5.75 -24.73 -0.14 -1.02 16 26 H 0.05 0.36 8.08 -51.93 -0.42 -0.06 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.55 7.79 -51.93 -0.40 0.15 16 31 H 0.06 0.69 7.72 -51.93 -0.40 0.29 16 32 H 0.07 0.99 7.77 -51.93 -0.40 0.58 16 33 H 0.09 0.74 7.22 -51.93 -0.37 0.36 16 34 H 0.09 0.63 8.11 -51.93 -0.42 0.21 16 35 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.07 0.61 8.07 -51.93 -0.42 0.19 16 37 H 0.07 0.45 6.44 -51.93 -0.33 0.12 16 38 H 0.07 0.91 8.07 -51.93 -0.42 0.49 16 39 H 0.08 1.30 7.42 -51.93 -0.39 0.92 16 40 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 41 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.38 10.83 7.67 -40.82 -0.31 10.51 16 45 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 46 H 0.07 0.47 7.98 -51.93 -0.41 0.06 16 47 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 371.72 15.07 5.60 5.60 Total: -1.00 -34.02 371.72 -9.02 -43.03 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -8.89 Total: 4.26 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: -0.65 Total: -5.09 kcal Atomic # 7 Polarization: -56.57 SS G_CDS: -0.13 Total: -56.71 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: 0.08 Total: -9.14 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -5.02 Total: 18.03 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.02 -9.02 -43.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754390063.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.345 kcal (2) G-P(sol) polarization free energy of solvation -34.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds