Wall clock time and date at job start Tue Mar 31 2020 06:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 110.01720 * 2 1 4 4 C 1.54263 * 110.03021 * 121.44526 * 2 1 3 5 5 C 1.55024 * 104.28293 * 142.80202 * 4 2 1 6 6 C 1.54886 * 102.68500 * 322.23166 * 5 4 2 7 7 H 1.09001 * 110.49002 * 279.03044 * 6 5 4 8 8 C 1.52998 * 110.49056 * 156.51460 * 6 5 4 9 9 C 1.50703 * 109.47219 * 68.24439 * 8 6 5 10 10 O 1.21287 * 119.99553 * 359.97438 * 9 8 6 11 11 N 1.34767 * 120.00292 * 180.02562 * 9 8 6 12 12 C 1.46506 * 119.99864 * 359.97438 * 11 9 8 13 13 C 1.46506 * 120.00112 * 179.97438 * 11 9 8 14 14 C 1.52997 * 109.46748 * 90.00253 * 13 11 9 15 15 C 1.53004 * 109.47000 * 180.02562 * 14 13 11 16 16 N 1.46499 * 109.47198 * 179.97438 * 15 14 13 17 17 C 1.36939 * 119.99933 * 180.27608 * 16 15 14 18 18 H 1.08001 * 119.99700 * 359.72658 * 17 16 15 19 19 C 1.38810 * 120.00095 * 179.71972 * 17 16 15 20 20 N 1.31624 * 119.99740 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00044 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47201 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47080 * 120.00466 * 21 19 17 24 24 H 1.48506 * 109.47018 * 240.00565 * 21 19 17 25 25 C 1.53874 * 110.03366 * 238.60651 * 2 1 3 26 26 H 1.08997 * 109.46724 * 181.38848 * 1 2 3 27 27 H 1.08996 * 109.47049 * 301.39149 * 1 2 3 28 28 H 1.08997 * 109.46733 * 61.39262 * 1 2 3 29 29 H 1.09001 * 110.48552 * 261.57172 * 4 2 1 30 30 H 1.08999 * 110.49047 * 24.08027 * 4 2 1 31 31 H 1.08998 * 110.88188 * 203.89779 * 5 4 2 32 32 H 1.08999 * 110.70053 * 80.48575 * 5 4 2 33 33 H 1.08998 * 109.47012 * 308.24651 * 8 6 5 34 34 H 1.08998 * 109.47608 * 188.24713 * 8 6 5 35 35 H 1.08997 * 109.46843 * 269.99606 * 12 11 9 36 36 H 1.08997 * 109.47201 * 30.00096 * 12 11 9 37 37 H 1.09002 * 109.46708 * 150.00009 * 12 11 9 38 38 H 1.08995 * 109.46761 * 330.00030 * 13 11 9 39 39 H 1.09007 * 109.46829 * 210.00049 * 13 11 9 40 40 H 1.08995 * 109.47672 * 60.00334 * 14 13 11 41 41 H 1.09006 * 109.46819 * 299.99764 * 14 13 11 42 42 H 1.09009 * 109.46730 * 59.99606 * 15 14 13 43 43 H 1.08998 * 109.46846 * 300.00150 * 15 14 13 44 44 H 0.97001 * 119.99790 * 359.97438 * 16 15 14 45 45 H 0.96998 * 119.99409 * 179.97438 * 20 19 17 46 46 H 1.09005 * 110.02928 * 121.42684 * 25 2 1 47 47 H 1.09007 * 110.07381 * 0.03041 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9031 1.0241 0.0000 4 6 2.0584 -0.7561 1.2365 5 6 3.3137 -1.5046 0.7195 6 6 2.8875 -1.9404 -0.7043 7 1 2.2778 -2.8429 -0.6606 8 6 4.1175 -2.1689 -1.5852 9 6 4.8690 -3.3794 -1.0943 10 8 4.4613 -3.9981 -0.1341 11 7 5.9947 -3.7738 -1.7216 12 6 6.4876 -3.0260 -2.8810 13 6 6.7257 -4.9502 -1.2440 14 6 6.1987 -6.2000 -1.9519 15 6 6.9615 -7.4288 -1.4527 16 7 6.4565 -8.6256 -2.1301 17 6 6.9883 -9.8533 -1.8383 18 1 7.7831 -9.9386 -1.1120 19 6 6.5059 -10.9880 -2.4758 20 7 5.5375 -10.8838 -3.3612 21 14 7.2318 -12.6626 -2.0782 22 1 8.2998 -12.5095 -1.0579 23 1 6.1661 -13.5511 -1.5492 24 1 7.8063 -13.2584 -3.3112 25 6 2.0572 -0.7530 -1.2340 26 1 -0.3633 -1.0274 0.0249 27 1 -0.3633 0.5353 0.8772 28 1 -0.3633 0.4920 -0.9022 29 1 2.3297 -0.0546 2.0254 30 1 1.3133 -1.4651 1.5974 31 1 3.5311 -2.3736 1.3405 32 1 4.1721 -0.8341 0.6776 33 1 4.7662 -1.2943 -1.5372 34 1 3.8014 -2.3307 -2.6157 35 1 6.0531 -3.4393 -3.7912 36 1 6.2026 -1.9783 -2.7856 37 1 7.5737 -3.1043 -2.9289 38 1 6.5832 -5.0545 -0.1684 39 1 7.7874 -4.8307 -1.4601 40 1 6.3411 -6.0958 -3.0275 41 1 5.1369 -6.3194 -1.7358 42 1 6.8187 -7.5329 -0.3771 43 1 8.0233 -7.3095 -1.6683 44 1 5.7424 -8.5489 -2.7821 45 1 5.2007 -11.6767 -3.8069 46 1 2.6868 -0.0945 -1.8325 47 1 1.2235 -1.1184 -1.8337 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754390064.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:44 Heat of formation + Delta-G solvation = -54.939132 kcal Electronic energy + Delta-G solvation = -22178.320787 eV Core-core repulsion = 18974.104332 eV Total energy + Delta-G solvation = -3204.216455 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.16664 -38.47248 -36.08337 -34.77335 -32.98041 -32.07626 -30.11635 -29.52473 -27.45666 -26.88874 -25.24644 -24.11134 -22.60342 -20.93735 -20.60860 -19.64966 -19.02584 -17.10148 -17.01437 -16.32040 -15.76844 -15.37913 -15.06229 -14.49358 -14.35737 -13.88832 -13.68855 -13.41879 -13.33246 -13.19627 -12.97087 -12.89675 -12.62059 -12.53266 -12.02293 -11.82104 -11.74755 -11.22709 -10.97226 -10.91105 -10.90278 -10.83502 -10.82448 -10.74373 -10.68199 -10.54439 -10.33962 -10.01319 -9.71157 -9.58469 -8.83060 -8.60714 -6.86991 -5.71960 -3.00459 2.69459 3.02380 3.46493 3.51681 3.54344 4.28505 4.37244 4.48236 4.63254 4.65435 4.86847 4.93573 5.01717 5.20448 5.21707 5.27569 5.28190 5.31479 5.38591 5.42513 5.46476 5.51433 5.56812 5.59931 5.61867 5.69661 5.75506 5.78103 5.84005 5.91216 5.94516 5.98502 6.13361 6.16748 6.24304 6.34168 6.35300 6.44063 6.60035 6.91429 6.94176 7.40800 7.74622 8.24898 8.47168 9.57881 10.16904 10.51545 11.51323 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026917 B = 0.002613 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.974587 B =10714.892998 C =11143.991353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.097 4.097 3 H 0.068 0.932 4 C -0.122 4.122 5 C -0.117 4.117 6 C -0.077 4.077 7 H 0.083 0.917 8 C -0.132 4.132 9 C 0.510 3.490 10 O -0.532 6.532 11 N -0.619 5.619 12 C 0.078 3.922 13 C 0.119 3.881 14 C -0.138 4.138 15 C 0.156 3.844 16 N -0.734 5.734 17 C -0.237 4.237 18 H 0.071 0.929 19 C -0.017 4.017 20 N -0.935 5.935 21 Si 0.908 3.092 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.292 1.292 25 C -0.117 4.117 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.059 0.941 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.057 0.943 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.060 0.940 41 H 0.065 0.935 42 H 0.020 0.980 43 H 0.018 0.982 44 H 0.383 0.617 45 H 0.254 0.746 46 H 0.063 0.937 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.402 27.148 3.085 27.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.115 4.115 3 H 0.086 0.914 4 C -0.159 4.159 5 C -0.154 4.154 6 C -0.096 4.096 7 H 0.101 0.899 8 C -0.172 4.172 9 C 0.298 3.702 10 O -0.408 6.408 11 N -0.352 5.352 12 C -0.066 4.066 13 C -0.004 4.004 14 C -0.177 4.177 15 C 0.028 3.972 16 N -0.378 5.378 17 C -0.368 4.368 18 H 0.089 0.911 19 C -0.213 4.213 20 N -0.584 5.584 21 Si 0.739 3.261 22 H -0.205 1.205 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.155 4.155 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.078 0.922 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.101 0.899 39 H 0.093 0.907 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.038 0.962 43 H 0.036 0.964 44 H 0.217 0.783 45 H 0.064 0.936 46 H 0.081 0.919 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.503 26.699 3.675 27.324 hybrid contribution 0.208 -0.950 -0.305 1.019 sum -4.296 25.748 3.371 26.321 Atomic orbital electron populations 1.21898 0.95193 1.01886 1.01317 1.21730 0.95553 0.99172 0.95085 0.91350 1.22477 0.97777 0.98796 0.96856 1.22571 0.96820 0.99971 0.96069 1.21756 0.94754 0.98580 0.94498 0.89879 1.21787 0.97487 0.96629 1.01270 1.20697 0.80467 0.85964 0.83097 1.90707 1.66451 1.56395 1.27215 1.47949 1.26209 1.29620 1.31460 1.21807 1.00429 0.95987 0.88341 1.21489 0.94956 0.83843 1.00082 1.22044 1.01306 0.94247 1.00100 1.20546 0.95242 0.85977 0.95418 1.42371 1.44380 1.01829 1.49199 1.19303 1.14335 0.84510 1.18659 0.91092 1.24763 0.99066 0.97947 0.99506 1.69683 1.29956 1.28291 1.30442 0.86093 0.78156 0.84455 0.77372 1.20541 1.21860 1.21888 1.22312 0.99299 0.96608 0.97274 0.92482 0.92916 0.92886 0.92056 0.91518 0.90282 0.92203 0.89161 0.89066 0.92436 0.91257 0.90924 0.89875 0.90700 0.92087 0.91656 0.96242 0.96440 0.78341 0.93605 0.91861 0.91606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 8.85 37.16 0.33 -0.68 16 2 C -0.10 -0.73 3.50 -89.50 -0.31 -1.04 16 3 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 4 C -0.12 -1.04 6.36 -25.00 -0.16 -1.20 16 5 C -0.12 -1.18 5.70 -24.67 -0.14 -1.32 16 6 C -0.08 -0.75 2.45 -88.96 -0.22 -0.97 16 7 H 0.08 0.99 7.96 -51.93 -0.41 0.58 16 8 C -0.13 -1.21 3.61 -27.88 -0.10 -1.31 16 9 C 0.51 6.74 7.47 -10.99 -0.08 6.65 16 10 O -0.53 -9.15 14.19 5.55 0.08 -9.07 16 11 N -0.62 -7.53 2.87 -181.56 -0.52 -8.05 16 12 C 0.08 0.63 10.29 59.85 0.62 1.25 16 13 C 0.12 1.68 5.45 -4.04 -0.02 1.66 16 14 C -0.14 -2.43 5.65 -26.73 -0.15 -2.58 16 15 C 0.16 3.34 6.26 -4.04 -0.03 3.32 16 16 N -0.73 -19.79 5.60 -59.90 -0.34 -20.13 16 17 C -0.24 -6.94 9.99 -15.06 -0.15 -7.09 16 18 H 0.07 2.01 7.83 -52.49 -0.41 1.60 16 19 C -0.02 -0.51 5.50 -17.43 -0.10 -0.61 16 20 N -0.93 -29.30 13.06 55.49 0.72 -28.58 16 21 Si 0.91 23.07 29.55 -169.99 -5.02 18.05 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 24 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 25 C -0.12 -0.90 6.03 -25.61 -0.15 -1.06 16 26 H 0.06 0.43 8.12 -51.93 -0.42 0.00 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.60 7.83 -51.93 -0.41 0.20 16 31 H 0.08 0.99 7.16 -51.93 -0.37 0.62 16 32 H 0.06 0.56 8.00 -51.93 -0.42 0.14 16 33 H 0.09 0.64 7.32 -51.93 -0.38 0.26 16 34 H 0.09 0.72 8.11 -51.93 -0.42 0.30 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.40 6.44 -51.93 -0.33 0.07 16 37 H 0.07 0.52 7.89 -51.93 -0.41 0.11 16 38 H 0.08 1.29 7.42 -51.93 -0.39 0.91 16 39 H 0.07 0.90 7.89 -51.93 -0.41 0.49 16 40 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 42 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 43 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 44 H 0.38 10.85 7.67 -40.82 -0.31 10.54 16 45 H 0.25 7.64 8.31 -40.82 -0.34 7.30 16 46 H 0.06 0.42 7.84 -51.93 -0.41 0.01 16 47 H 0.07 0.50 7.68 -51.92 -0.40 0.10 16 LS Contribution 370.46 15.07 5.58 5.58 Total: -1.00 -34.01 370.46 -9.00 -43.02 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -8.84 Total: 4.17 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: -0.67 Total: -4.99 kcal Atomic # 7 Polarization: -56.63 SS G_CDS: -0.13 Total: -56.76 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: 0.08 Total: -9.07 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -5.02 Total: 18.05 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.01 -9.00 -43.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754390064.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.923 kcal (2) G-P(sol) polarization free energy of solvation -34.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds