Wall clock time and date at job start Tue Mar 31 2020 06:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47131 * 2 1 4 4 C 1.52995 * 109.47563 * 120.00343 * 2 1 3 5 5 C 1.53011 * 109.47076 * 64.99636 * 4 2 1 6 6 C 1.52995 * 109.47076 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.47186 * 179.97438 * 6 5 4 8 8 O 1.21285 * 119.99794 * 0.02562 * 7 6 5 9 9 N 1.34776 * 120.00365 * 180.02562 * 7 6 5 10 10 C 1.47020 * 125.65281 * 179.97438 * 9 7 6 11 11 C 1.54316 * 107.27568 * 178.97789 * 10 9 7 12 12 H 1.09003 * 110.72351 * 96.16743 * 11 10 9 13 13 C 1.52997 * 110.87319 * 219.37341 * 11 10 9 14 14 C 1.55158 * 102.94139 * 337.80546 * 11 10 9 15 15 H 1.08996 * 111.04098 * 153.59117 * 14 11 10 16 16 N 1.46501 * 111.00529 * 277.42924 * 14 11 10 17 17 C 1.36932 * 120.00032 * 198.64683 * 16 14 11 18 18 H 1.08003 * 120.00163 * 0.02562 * 17 16 14 19 19 C 1.38820 * 120.00065 * 179.97438 * 17 16 14 20 20 N 1.31612 * 119.99791 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00026 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.47349 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47243 * 120.00103 * 21 19 17 24 24 H 1.48502 * 109.46998 * 240.00509 * 21 19 17 25 25 C 1.47422 * 125.64527 * 0.03003 * 9 7 6 26 26 H 1.09004 * 109.47061 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46516 * 299.99609 * 1 2 3 28 28 H 1.08993 * 109.46946 * 59.99837 * 1 2 3 29 29 H 1.09005 * 109.46516 * 240.00391 * 2 1 3 30 30 H 1.09006 * 109.46914 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47554 * 300.00165 * 3 2 1 32 32 H 1.08997 * 109.46899 * 60.00429 * 3 2 1 33 33 H 1.08995 * 109.47224 * 305.00083 * 4 2 1 34 34 H 1.08993 * 109.47602 * 184.99749 * 4 2 1 35 35 H 1.08995 * 109.46730 * 60.00144 * 5 4 2 36 36 H 1.08993 * 109.46997 * 300.00483 * 5 4 2 37 37 H 1.09004 * 109.46897 * 59.99969 * 6 5 4 38 38 H 1.08993 * 109.47602 * 300.00113 * 6 5 4 39 39 H 1.09000 * 109.88493 * 59.55540 * 10 9 7 40 40 H 1.09005 * 110.00581 * 298.46850 * 10 9 7 41 41 H 1.09004 * 109.47379 * 173.61039 * 13 11 10 42 42 H 1.08996 * 109.47147 * 293.60387 * 13 11 10 43 43 H 1.09001 * 109.47442 * 53.61122 * 13 11 10 44 44 H 0.96995 * 119.99785 * 18.64903 * 16 14 11 45 45 H 0.97003 * 119.99930 * 179.97438 * 20 19 17 46 46 H 1.08998 * 110.36873 * 85.25268 * 25 9 7 47 47 H 1.09005 * 110.36491 * 322.92676 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6353 -2.1956 1.1878 6 6 2.1449 -2.9167 2.4372 7 6 1.7456 -4.3686 2.3772 8 8 1.1159 -4.7856 1.4282 9 7 2.0882 -5.2038 3.3780 10 6 1.7648 -6.6363 3.4474 11 6 2.3799 -7.1822 4.7531 12 1 1.6374 -7.2009 5.5509 13 6 2.9727 -8.5758 4.5354 14 6 3.4977 -6.1532 5.0675 15 1 3.7076 -6.1177 6.1364 16 7 4.7137 -6.4496 4.3060 17 6 5.9144 -5.9230 4.7011 18 1 5.9651 -5.2894 5.5743 19 6 7.0667 -6.2043 3.9799 20 7 7.0050 -6.9768 2.9161 21 14 8.7047 -5.4865 4.5192 22 1 8.5056 -4.6574 5.7351 23 1 9.6529 -6.5887 4.8209 24 1 9.2576 -4.6419 3.4301 25 6 2.8485 -4.8318 4.5851 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3632 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 3.1301 1.4424 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9562 0.8900 33 1 1.6056 -0.2619 2.1369 34 1 3.1264 -0.6444 1.2950 35 1 2.0699 -2.6550 0.3001 36 1 0.5491 -2.2725 1.1419 37 1 1.7099 -2.4571 3.3248 38 1 3.2311 -2.8399 2.4836 39 1 2.1939 -7.1552 2.5902 40 1 0.6836 -6.7742 3.4608 41 1 3.4988 -8.8917 5.4363 42 1 2.1714 -9.2814 4.3165 43 1 3.6705 -8.5472 3.6985 44 1 4.6682 -7.0189 3.5220 45 1 7.8101 -7.1731 2.4119 46 1 2.1784 -4.4373 5.3489 47 1 3.6172 -4.0994 4.3385 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755116928.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:11 Heat of formation + Delta-G solvation = -55.101065 kcal Electronic energy + Delta-G solvation = -22930.208683 eV Core-core repulsion = 19725.985207 eV Total energy + Delta-G solvation = -3204.223477 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.74622 -37.79406 -36.83256 -33.84694 -32.84713 -32.16872 -30.48992 -27.85810 -27.59252 -27.25673 -25.54858 -23.88756 -22.42763 -21.46446 -20.03914 -19.23111 -18.69545 -17.46140 -16.46093 -16.04654 -15.64346 -14.97746 -14.68505 -14.50850 -14.05964 -13.94015 -13.56136 -13.35416 -13.03805 -12.90785 -12.56571 -12.36484 -12.17094 -12.02022 -11.94802 -11.68070 -11.56765 -11.46699 -11.12340 -10.97347 -10.94637 -10.76052 -10.68407 -10.62832 -10.45700 -10.38254 -10.26085 -9.92822 -9.67817 -9.41349 -9.04352 -8.16220 -7.04232 -5.84645 -3.14481 3.06883 3.37952 3.43550 3.45803 3.46282 4.51289 4.64923 4.78129 4.81949 4.90118 5.14772 5.17666 5.20809 5.31099 5.34027 5.48477 5.54762 5.57819 5.61619 5.62710 5.66821 5.73043 5.77772 5.83429 5.84617 5.91292 5.93493 6.00780 6.10480 6.13537 6.19102 6.21059 6.22008 6.35452 6.38041 6.39882 6.47516 6.51879 6.65247 6.80828 6.92090 7.62644 8.00885 8.33129 8.60451 9.45070 10.01026 10.35672 11.37487 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.013372 B = 0.004428 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.469996 B = 6322.037183 C = 7890.264596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.098 4.098 3 C -0.147 4.147 4 C -0.115 4.115 5 C -0.103 4.103 6 C -0.135 4.135 7 C 0.527 3.473 8 O -0.559 6.559 9 N -0.604 5.604 10 C 0.117 3.883 11 C -0.113 4.113 12 H 0.079 0.921 13 C -0.132 4.132 14 C 0.171 3.829 15 H 0.070 0.930 16 N -0.710 5.710 17 C -0.246 4.246 18 H 0.072 0.928 19 C -0.008 4.008 20 N -0.928 5.928 21 Si 0.906 3.094 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.292 1.292 25 C 0.069 3.931 26 H 0.060 0.940 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.070 0.930 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.065 0.935 40 H 0.056 0.944 41 H 0.060 0.940 42 H 0.044 0.956 43 H 0.068 0.932 44 H 0.387 0.613 45 H 0.256 0.744 46 H 0.054 0.946 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.002 9.776 0.694 15.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.116 4.116 3 C -0.204 4.204 4 C -0.153 4.153 5 C -0.141 4.141 6 C -0.175 4.175 7 C 0.316 3.684 8 O -0.438 6.438 9 N -0.336 5.336 10 C -0.006 4.006 11 C -0.133 4.133 12 H 0.097 0.903 13 C -0.190 4.190 14 C 0.059 3.941 15 H 0.088 0.912 16 N -0.351 5.351 17 C -0.377 4.377 18 H 0.090 0.910 19 C -0.205 4.205 20 N -0.575 5.575 21 Si 0.737 3.263 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.219 1.219 25 C -0.057 4.057 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.088 0.912 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.105 0.895 38 H 0.113 0.887 39 H 0.084 0.916 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.063 0.937 43 H 0.087 0.913 44 H 0.223 0.777 45 H 0.066 0.934 46 H 0.073 0.927 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.180 9.675 0.207 15.557 hybrid contribution 1.034 0.242 0.042 1.063 sum -11.146 9.917 0.249 14.921 Atomic orbital electron populations 1.21900 0.95418 1.02084 1.01269 1.21113 0.95865 0.95945 0.98725 1.21846 1.01000 0.96160 1.01442 1.21674 1.01013 0.95040 0.97574 1.21383 1.01627 0.93893 0.97198 1.21632 1.03418 0.92001 1.00419 1.20328 0.79018 0.88009 0.81008 1.90646 1.41701 1.78366 1.33076 1.48365 1.54632 1.09487 1.21162 1.21905 0.98796 0.81455 0.98462 1.22485 0.97930 0.96629 0.96268 0.90311 1.21600 1.00060 0.94088 1.03214 1.21363 0.86841 0.89998 0.95942 0.91231 1.42396 1.01683 1.58757 1.32270 1.19263 0.85164 1.24406 1.08909 0.90965 1.24750 0.97926 1.00171 0.97641 1.69671 1.27964 1.40724 1.19167 0.86147 0.84260 0.78260 0.77651 1.20489 1.21832 1.21882 1.23393 0.94431 1.01980 0.85943 0.92145 0.92894 0.93117 0.91181 0.92699 0.92971 0.92833 0.92058 0.91782 0.91324 0.91298 0.89537 0.88690 0.91632 0.92548 0.92135 0.93699 0.91280 0.77720 0.93432 0.92750 0.90165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 8.95 37.16 0.33 -1.06 16 2 C -0.10 -0.97 2.92 -90.62 -0.26 -1.23 16 3 C -0.15 -1.27 9.19 37.15 0.34 -0.93 16 4 C -0.12 -1.24 4.68 -26.73 -0.13 -1.36 16 5 C -0.10 -1.35 4.26 -26.73 -0.11 -1.47 16 6 C -0.13 -1.92 4.71 -27.89 -0.13 -2.05 16 7 C 0.53 9.55 7.85 -10.99 -0.09 9.46 16 8 O -0.56 -11.76 16.31 5.55 0.09 -11.67 16 9 N -0.60 -10.61 3.33 -170.51 -0.57 -11.18 16 10 C 0.12 1.97 6.46 -3.07 -0.02 1.95 16 11 C -0.11 -1.76 3.41 -88.79 -0.30 -2.06 16 12 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 13 C -0.13 -2.09 8.72 37.16 0.32 -1.77 16 14 C 0.17 3.10 3.44 -65.77 -0.23 2.87 16 15 H 0.07 1.22 8.13 -51.93 -0.42 0.80 16 16 N -0.71 -16.54 4.74 -51.34 -0.24 -16.78 16 17 C -0.25 -6.40 9.98 -15.06 -0.15 -6.55 16 18 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 19 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 20 N -0.93 -27.23 13.06 55.49 0.72 -26.50 16 21 Si 0.91 21.60 29.55 -169.99 -5.02 16.57 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 C 0.07 1.13 6.39 -2.52 -0.02 1.12 16 26 H 0.06 0.61 6.57 -51.93 -0.34 0.27 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.07 1.01 8.10 -51.93 -0.42 0.59 16 36 H 0.07 0.92 6.52 -51.93 -0.34 0.58 16 37 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.09 1.40 7.85 -51.93 -0.41 0.99 16 39 H 0.07 1.24 7.78 -51.93 -0.40 0.83 16 40 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.07 1.30 6.37 -51.93 -0.33 0.97 16 44 H 0.39 9.86 6.09 -40.82 -0.25 9.61 16 45 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 46 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.08 1.42 7.48 -51.93 -0.39 1.04 16 LS Contribution 369.77 15.07 5.57 5.57 Total: -1.00 -30.31 369.77 -8.75 -39.05 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -8.77 Total: 8.35 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: -0.53 Total: -3.41 kcal Atomic # 7 Polarization: -54.38 SS G_CDS: -0.09 Total: -54.46 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.09 Total: -11.67 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.31 -8.75 -39.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755116928.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.049 kcal (2) G-P(sol) polarization free energy of solvation -30.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds