Wall clock time and date at job start Tue Mar 31 2020 06:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47131 * 2 1 4 4 C 1.52995 * 109.47563 * 120.00343 * 2 1 3 5 5 C 1.53011 * 109.47076 * 64.99636 * 4 2 1 6 6 C 1.52995 * 109.47076 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.47186 * 179.97438 * 6 5 4 8 8 O 1.21285 * 119.99794 * 0.02562 * 7 6 5 9 9 N 1.34776 * 120.00365 * 180.02562 * 7 6 5 10 10 C 1.47020 * 125.65281 * 179.97438 * 9 7 6 11 11 C 1.54316 * 107.27568 * 178.97789 * 10 9 7 12 12 H 1.09003 * 110.72351 * 96.16743 * 11 10 9 13 13 C 1.52997 * 110.87319 * 219.37341 * 11 10 9 14 14 C 1.55158 * 102.94139 * 337.80546 * 11 10 9 15 15 H 1.08996 * 111.04098 * 153.59117 * 14 11 10 16 16 N 1.46501 * 111.00529 * 277.42924 * 14 11 10 17 17 C 1.36932 * 120.00032 * 198.64683 * 16 14 11 18 18 H 1.08003 * 120.00163 * 0.02562 * 17 16 14 19 19 C 1.38820 * 120.00065 * 179.97438 * 17 16 14 20 20 N 1.31612 * 119.99791 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00026 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.47349 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47243 * 120.00103 * 21 19 17 24 24 H 1.48502 * 109.46998 * 240.00509 * 21 19 17 25 25 C 1.47422 * 125.64527 * 0.03003 * 9 7 6 26 26 H 1.09004 * 109.47061 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46516 * 299.99609 * 1 2 3 28 28 H 1.08993 * 109.46946 * 59.99837 * 1 2 3 29 29 H 1.09005 * 109.46516 * 240.00391 * 2 1 3 30 30 H 1.09006 * 109.46914 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47554 * 300.00165 * 3 2 1 32 32 H 1.08997 * 109.46899 * 60.00429 * 3 2 1 33 33 H 1.08995 * 109.47224 * 305.00083 * 4 2 1 34 34 H 1.08993 * 109.47602 * 184.99749 * 4 2 1 35 35 H 1.08995 * 109.46730 * 60.00144 * 5 4 2 36 36 H 1.08993 * 109.46997 * 300.00483 * 5 4 2 37 37 H 1.09004 * 109.46897 * 59.99969 * 6 5 4 38 38 H 1.08993 * 109.47602 * 300.00113 * 6 5 4 39 39 H 1.09000 * 109.88493 * 59.55540 * 10 9 7 40 40 H 1.09005 * 110.00581 * 298.46850 * 10 9 7 41 41 H 1.09004 * 109.47379 * 173.61039 * 13 11 10 42 42 H 1.08996 * 109.47147 * 293.60387 * 13 11 10 43 43 H 1.09001 * 109.47442 * 53.61122 * 13 11 10 44 44 H 0.96995 * 119.99785 * 18.64903 * 16 14 11 45 45 H 0.97003 * 119.99930 * 179.97438 * 20 19 17 46 46 H 1.08998 * 110.36873 * 85.25268 * 25 9 7 47 47 H 1.09005 * 110.36491 * 322.92676 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6353 -2.1956 1.1878 6 6 2.1449 -2.9167 2.4372 7 6 1.7456 -4.3686 2.3772 8 8 1.1159 -4.7856 1.4282 9 7 2.0882 -5.2038 3.3780 10 6 1.7648 -6.6363 3.4474 11 6 2.3799 -7.1822 4.7531 12 1 1.6374 -7.2009 5.5509 13 6 2.9727 -8.5758 4.5354 14 6 3.4977 -6.1532 5.0675 15 1 3.7076 -6.1177 6.1364 16 7 4.7137 -6.4496 4.3060 17 6 5.9144 -5.9230 4.7011 18 1 5.9651 -5.2894 5.5743 19 6 7.0667 -6.2043 3.9799 20 7 7.0050 -6.9768 2.9161 21 14 8.7047 -5.4865 4.5192 22 1 8.5056 -4.6574 5.7351 23 1 9.6529 -6.5887 4.8209 24 1 9.2576 -4.6419 3.4301 25 6 2.8485 -4.8318 4.5851 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3632 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 3.1301 1.4424 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9562 0.8900 33 1 1.6056 -0.2619 2.1369 34 1 3.1264 -0.6444 1.2950 35 1 2.0699 -2.6550 0.3001 36 1 0.5491 -2.2725 1.1419 37 1 1.7099 -2.4571 3.3248 38 1 3.2311 -2.8399 2.4836 39 1 2.1939 -7.1552 2.5902 40 1 0.6836 -6.7742 3.4608 41 1 3.4988 -8.8917 5.4363 42 1 2.1714 -9.2814 4.3165 43 1 3.6705 -8.5472 3.6985 44 1 4.6682 -7.0189 3.5220 45 1 7.8101 -7.1731 2.4119 46 1 2.1784 -4.4373 5.3489 47 1 3.6172 -4.0994 4.3385 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755116928.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:10 Heat of formation + Delta-G solvation = -72.131228 kcal Electronic energy + Delta-G solvation = -22930.947167 eV Core-core repulsion = 19725.985207 eV Total energy + Delta-G solvation = -3204.961960 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.14622 -39.15722 -37.79934 -35.63685 -34.12803 -33.47293 -32.22130 -29.33836 -28.79502 -27.98828 -26.74725 -25.78570 -23.70272 -22.67863 -20.87390 -20.64878 -20.06676 -19.29221 -17.87219 -17.41912 -16.94459 -16.30699 -16.12686 -15.81521 -15.50398 -15.07973 -14.81088 -14.51695 -14.43122 -14.30862 -13.83750 -13.53270 -13.38841 -13.10402 -13.03613 -12.96522 -12.87407 -12.81508 -12.59368 -12.49203 -12.27480 -12.06580 -11.95121 -11.90472 -11.55471 -11.47817 -11.45062 -11.35793 -11.31001 -11.01563 -10.78255 -9.62997 -8.93855 -7.91361 -5.19292 1.49357 1.50119 1.59446 1.65506 2.13144 2.58205 3.40236 3.47211 3.78417 3.85173 3.89362 3.96373 3.97588 4.12355 4.12957 4.21777 4.36104 4.43978 4.58620 4.64543 4.65734 4.70760 4.73534 4.80325 4.83771 4.86546 4.88749 4.96871 4.98933 5.01569 5.04172 5.10161 5.20357 5.24133 5.26830 5.29571 5.38732 5.44963 5.53520 5.54140 5.55318 5.60276 6.29917 6.62186 7.19425 7.37118 8.13210 8.35075 9.32443 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.013372 B = 0.004428 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.469996 B = 6322.037183 C = 7890.264596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.100 4.100 3 C -0.144 4.144 4 C -0.109 4.109 5 C -0.097 4.097 6 C -0.127 4.127 7 C 0.515 3.485 8 O -0.597 6.597 9 N -0.608 5.608 10 C 0.114 3.886 11 C -0.098 4.098 12 H 0.119 0.881 13 C -0.127 4.127 14 C 0.157 3.843 15 H 0.086 0.914 16 N -0.724 5.724 17 C -0.231 4.231 18 H 0.086 0.914 19 C -0.076 4.076 20 N -0.972 5.972 21 Si 0.967 3.033 22 H -0.259 1.259 23 H -0.299 1.299 24 H -0.301 1.301 25 C 0.077 3.923 26 H 0.047 0.953 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.077 0.923 34 H 0.061 0.939 35 H 0.042 0.958 36 H 0.065 0.935 37 H 0.117 0.883 38 H 0.090 0.910 39 H 0.034 0.966 40 H 0.072 0.928 41 H 0.059 0.941 42 H 0.069 0.931 43 H 0.030 0.970 44 H 0.372 0.628 45 H 0.247 0.753 46 H 0.097 0.903 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.270 11.574 3.045 17.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.119 4.119 3 C -0.201 4.201 4 C -0.146 4.146 5 C -0.135 4.135 6 C -0.166 4.166 7 C 0.306 3.694 8 O -0.479 6.479 9 N -0.340 5.340 10 C -0.009 4.009 11 C -0.117 4.117 12 H 0.137 0.863 13 C -0.185 4.185 14 C 0.047 3.953 15 H 0.104 0.896 16 N -0.363 5.363 17 C -0.363 4.363 18 H 0.104 0.896 19 C -0.268 4.268 20 N -0.623 5.623 21 Si 0.797 3.203 22 H -0.183 1.183 23 H -0.227 1.227 24 H -0.229 1.229 25 C -0.048 4.048 26 H 0.066 0.934 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.096 0.904 34 H 0.080 0.920 35 H 0.061 0.939 36 H 0.084 0.916 37 H 0.135 0.865 38 H 0.108 0.892 39 H 0.052 0.948 40 H 0.091 0.909 41 H 0.078 0.922 42 H 0.088 0.912 43 H 0.049 0.951 44 H 0.205 0.795 45 H 0.056 0.944 46 H 0.115 0.885 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.480 11.504 2.627 17.915 hybrid contribution 1.325 -0.357 -0.656 1.521 sum -12.155 11.147 1.972 16.610 Atomic orbital electron populations 1.21880 0.94911 1.01514 1.02173 1.21125 0.96322 0.96653 0.97786 1.21815 1.00901 0.95175 1.02245 1.21629 1.00977 0.93267 0.98736 1.21323 1.01163 0.95331 0.95689 1.21661 1.03140 0.89672 1.02160 1.21071 0.78439 0.89511 0.80414 1.90622 1.43559 1.79306 1.34413 1.48533 1.54293 1.09676 1.21499 1.21954 0.99623 0.81192 0.98125 1.22480 0.97536 0.95253 0.96469 0.86271 1.21531 1.00089 0.95302 1.01552 1.21704 0.85808 0.91745 0.96013 0.89633 1.42595 1.02889 1.58545 1.32296 1.19710 0.85988 1.22491 1.08105 0.89630 1.25496 1.01266 1.01671 0.98330 1.69841 1.28080 1.43358 1.21016 0.85161 0.80359 0.77258 0.77521 1.18329 1.22687 1.22931 1.23337 0.94772 1.00443 0.86236 0.93420 0.91923 0.92311 0.92413 0.92857 0.92247 0.91972 0.90420 0.91991 0.93926 0.91603 0.86488 0.89170 0.94774 0.90947 0.92188 0.91161 0.95096 0.79467 0.94422 0.88513 0.91488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 8.95 71.98 0.64 -1.91 16 2 C -0.10 -1.87 2.92 -10.80 -0.03 -1.90 16 3 C -0.14 -2.23 9.19 71.98 0.66 -1.57 16 4 C -0.11 -2.18 4.68 30.60 0.14 -2.03 16 5 C -0.10 -2.52 4.26 30.60 0.13 -2.39 16 6 C -0.13 -3.46 4.71 29.85 0.14 -3.32 16 7 C 0.51 18.44 7.85 87.66 0.69 19.13 16 8 O -0.60 -25.59 16.31 -3.05 -0.05 -25.64 16 9 N -0.61 -20.58 3.33 -811.77 -2.70 -23.28 16 10 C 0.11 3.74 6.46 86.73 0.56 4.30 16 11 C -0.10 -2.80 3.41 -9.61 -0.03 -2.83 16 12 H 0.12 2.55 8.14 -2.39 -0.02 2.53 16 13 C -0.13 -3.90 8.72 71.98 0.63 -3.28 16 14 C 0.16 5.34 3.44 46.39 0.16 5.50 16 15 H 0.09 2.68 8.13 -2.39 -0.02 2.66 16 16 N -0.72 -33.54 4.74 -316.34 -1.50 -35.04 16 17 C -0.23 -11.85 9.98 84.04 0.84 -11.01 16 18 H 0.09 4.09 7.83 -2.91 -0.02 4.06 16 19 C -0.08 -4.18 5.50 84.86 0.47 -3.71 16 20 N -0.97 -58.88 13.06 21.65 0.28 -58.59 16 21 Si 0.97 44.72 29.55 68.60 2.03 46.74 16 22 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 23 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 24 H -0.30 -14.27 7.11 99.48 0.71 -13.57 16 25 C 0.08 2.32 6.39 86.86 0.55 2.88 16 26 H 0.05 0.94 6.57 -2.39 -0.02 0.92 16 27 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 28 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.06 1.20 8.14 -2.38 -0.02 1.19 16 30 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 31 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.04 1.31 8.10 -2.39 -0.02 1.29 16 36 H 0.07 1.74 6.52 -2.39 -0.02 1.73 16 37 H 0.12 2.47 8.14 -2.38 -0.02 2.45 16 38 H 0.09 2.58 7.85 -2.39 -0.02 2.56 16 39 H 0.03 1.32 7.78 -2.39 -0.02 1.30 16 40 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 41 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.03 1.18 6.37 -2.39 -0.02 1.17 16 44 H 0.37 19.50 6.09 -92.71 -0.56 18.94 16 45 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 46 H 0.10 2.17 8.14 -2.39 -0.02 2.16 16 47 H 0.07 2.22 7.48 -2.38 -0.02 2.21 16 Total: -1.00 -67.49 369.77 3.96 -63.53 By element: Atomic # 1 Polarization: 34.08 SS G_CDS: 0.35 Total: 34.43 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: 5.55 Total: -2.16 kcal Atomic # 7 Polarization: -113.00 SS G_CDS: -3.92 Total: -116.91 kcal Atomic # 8 Polarization: -25.59 SS G_CDS: -0.05 Total: -25.64 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Total: -67.49 3.96 -63.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755116928.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.601 kcal (2) G-P(sol) polarization free energy of solvation -67.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds