Wall clock time and date at job start Tue Mar 31 2020 06:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53008 * 109.46964 * 2 1 4 4 C 1.52996 * 109.47114 * 119.99762 * 2 1 3 5 5 C 1.53002 * 109.47007 * 175.00482 * 4 2 1 6 6 C 1.50700 * 109.47104 * 180.02562 * 5 4 2 7 7 O 1.21283 * 120.00144 * 359.97438 * 6 5 4 8 8 N 1.34780 * 120.00047 * 179.97438 * 6 5 4 9 9 C 1.46496 * 119.99760 * 179.97438 * 8 6 5 10 10 H 1.08998 * 109.50238 * 34.94182 * 9 8 6 11 11 C 1.53035 * 109.50301 * 274.83598 * 9 8 6 12 12 C 1.53038 * 109.54142 * 301.41978 * 11 9 8 13 13 C 1.53190 * 109.31086 * 298.62995 * 12 11 9 14 14 N 1.46928 * 108.77729 * 54.63526 * 13 12 11 15 15 C 1.36942 * 120.63388 * 126.36565 * 14 13 12 16 16 H 1.07997 * 119.99732 * 209.03137 * 15 14 13 17 17 C 1.38805 * 119.99643 * 29.03383 * 15 14 13 18 18 N 1.31623 * 120.00575 * 15.01656 * 17 15 14 19 19 Si 1.86801 * 119.99825 * 195.02034 * 17 15 14 20 20 H 1.48501 * 109.47525 * 89.99551 * 19 17 15 21 21 H 1.48502 * 109.47207 * 209.99864 * 19 17 15 22 22 H 1.48498 * 109.47108 * 329.99577 * 19 17 15 23 23 C 1.46930 * 118.73547 * 306.39287 * 14 13 12 24 24 H 1.08997 * 109.69995 * 293.74740 * 23 14 13 25 25 C 1.53004 * 109.58432 * 173.39348 * 23 14 13 26 26 H 1.08995 * 109.47629 * 300.00110 * 1 2 3 27 27 H 1.09003 * 109.47065 * 60.00065 * 1 2 3 28 28 H 1.09002 * 109.47240 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47399 * 240.00386 * 2 1 3 30 30 H 1.08992 * 109.47311 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.46965 * 300.00376 * 3 2 1 32 32 H 1.09010 * 109.46702 * 59.99830 * 3 2 1 33 33 H 1.09001 * 109.47223 * 295.00084 * 4 2 1 34 34 H 1.08998 * 109.46802 * 55.00930 * 4 2 1 35 35 H 1.09006 * 109.47221 * 300.00044 * 5 4 2 36 36 H 1.08995 * 109.47480 * 59.99996 * 5 4 2 37 37 H 0.96993 * 120.00025 * 0.02562 * 8 6 5 38 38 H 1.09004 * 109.45775 * 61.43855 * 11 9 8 39 39 H 1.08996 * 109.46461 * 181.39614 * 11 9 8 40 40 H 1.08997 * 109.50114 * 178.67863 * 12 11 9 41 41 H 1.09005 * 109.50095 * 58.58001 * 12 11 9 42 42 H 1.08999 * 109.59125 * 294.84502 * 13 12 11 43 43 H 1.09001 * 109.58629 * 174.41825 * 13 12 11 44 44 H 0.96995 * 120.00324 * 180.02562 * 18 17 15 45 45 H 1.08999 * 109.47084 * 300.70762 * 25 23 14 46 46 H 1.09001 * 109.47057 * 60.70893 * 25 23 14 47 47 H 1.08997 * 109.46603 * 180.70667 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 3.5648 -0.8309 1.1880 6 6 4.0671 -1.5418 2.4182 7 8 3.2828 -1.9228 3.2612 8 7 5.3880 -1.7542 2.5816 9 6 5.8762 -2.4448 3.7778 10 1 5.1579 -3.2085 4.0757 11 6 6.0510 -1.4356 4.9148 12 6 7.0344 -0.3448 4.4845 13 6 8.3968 -0.9794 4.1877 14 7 8.2141 -2.0512 3.1995 15 6 8.9507 -2.0691 2.0452 16 1 8.5427 -2.5170 1.1512 17 6 10.2217 -1.5115 2.0244 18 7 10.8381 -1.2357 3.1543 19 14 11.0575 -1.1525 0.3929 20 1 10.7164 0.2247 -0.0456 21 1 12.5290 -1.2705 0.5539 22 1 10.5915 -2.1262 -0.6268 23 6 7.2255 -3.1032 3.4730 24 1 7.5458 -3.6943 4.3310 25 6 7.0888 -4.0096 2.2480 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 3.1298 1.4427 0.0005 31 1 1.6765 1.9564 -0.8900 32 1 1.6765 1.9564 0.8901 33 1 1.7516 -0.1582 2.1370 34 1 1.6054 -1.7198 1.2951 35 1 3.8532 -1.3938 0.3002 36 1 3.9994 0.1677 1.1421 37 1 6.0153 -1.4492 1.9077 38 1 5.0875 -0.9834 5.1503 39 1 6.4378 -1.9457 5.7970 40 1 7.1405 0.3863 5.2859 41 1 6.6602 0.1493 3.5878 42 1 8.8138 -1.3953 5.1049 43 1 9.0722 -0.2238 3.7865 44 1 11.7260 -0.8458 3.1397 45 1 6.7734 -3.4159 1.3901 46 1 8.0498 -4.4770 2.0328 47 1 6.3460 -4.7817 2.4484 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755715035.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:08 Heat of formation + Delta-G solvation = -48.075648 kcal Electronic energy + Delta-G solvation = -23720.460936 eV Core-core repulsion = 20516.542104 eV Total energy + Delta-G solvation = -3203.918832 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.74414 -37.82063 -36.45618 -33.88790 -32.42731 -31.77274 -30.85500 -29.21732 -27.29300 -26.32542 -25.06460 -24.36123 -21.94555 -20.80235 -20.23759 -19.80753 -18.68162 -16.78757 -16.43261 -15.71953 -15.37573 -14.95253 -14.67005 -14.23336 -14.00896 -13.79331 -13.66999 -13.13553 -13.11573 -12.86750 -12.59466 -12.46564 -12.29644 -11.91072 -11.78293 -11.38371 -11.25980 -11.21590 -10.99619 -10.87133 -10.73031 -10.71652 -10.60817 -10.57433 -10.51719 -10.11452 -10.01806 -9.65626 -9.38361 -9.30318 -8.54365 -8.40856 -6.69957 -5.83097 -3.28675 3.06426 3.32580 3.39657 3.41177 3.70261 4.42849 4.74505 4.78374 4.81946 5.16942 5.27438 5.30925 5.32088 5.41908 5.49682 5.58135 5.58578 5.62041 5.68603 5.72582 5.76187 5.83121 5.96827 5.97786 5.99481 6.09935 6.12631 6.22634 6.28727 6.34897 6.36443 6.42621 6.53792 6.68088 6.69506 6.78763 6.93999 6.97105 7.15473 7.37657 7.65661 7.75576 8.09824 8.39945 8.71477 9.16113 9.79142 10.36262 11.24660 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017419 B = 0.004671 C = 0.004156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.023106 B = 5993.556891 C = 6735.230797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.099 4.099 3 C -0.151 4.151 4 C -0.096 4.096 5 C -0.144 4.144 6 C 0.507 3.493 7 O -0.559 6.559 8 N -0.703 5.703 9 C 0.134 3.866 10 H 0.074 0.926 11 C -0.121 4.121 12 C -0.139 4.139 13 C 0.171 3.829 14 N -0.586 5.586 15 C -0.256 4.256 16 H 0.071 0.929 17 C 0.006 3.994 18 N -0.901 5.901 19 Si 0.900 3.100 20 H -0.288 1.288 21 H -0.292 1.292 22 H -0.279 1.279 23 C 0.159 3.841 24 H 0.038 0.962 25 C -0.135 4.135 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.408 0.592 38 H 0.049 0.951 39 H 0.061 0.939 40 H 0.046 0.954 41 H 0.052 0.948 42 H 0.017 0.983 43 H 0.087 0.913 44 H 0.254 0.746 45 H 0.053 0.947 46 H 0.062 0.938 47 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.122 2.262 -4.350 14.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 C -0.208 4.208 4 C -0.134 4.134 5 C -0.183 4.183 6 C 0.293 3.707 7 O -0.439 6.439 8 N -0.353 5.353 9 C 0.027 3.973 10 H 0.092 0.908 11 C -0.159 4.159 12 C -0.179 4.179 13 C 0.045 3.955 14 N -0.310 5.310 15 C -0.385 4.385 16 H 0.088 0.912 17 C -0.194 4.194 18 N -0.545 5.545 19 Si 0.730 3.270 20 H -0.215 1.215 21 H -0.218 1.218 22 H -0.205 1.205 23 C 0.052 3.948 24 H 0.055 0.945 25 C -0.193 4.193 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.107 0.893 36 H 0.110 0.890 37 H 0.244 0.756 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.064 0.936 41 H 0.071 0.929 42 H 0.035 0.965 43 H 0.106 0.894 44 H 0.064 0.936 45 H 0.072 0.928 46 H 0.081 0.919 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -14.466 2.035 -3.732 15.078 hybrid contribution 0.966 0.419 -1.022 1.467 sum -13.500 2.454 -4.754 14.521 Atomic orbital electron populations 1.21822 0.95324 1.01674 1.01541 1.21156 0.95690 0.96421 0.98473 1.21918 1.01375 0.95971 1.01548 1.21364 0.93198 1.01222 0.97590 1.21739 0.97765 1.01836 0.97008 1.20659 0.82596 0.79513 0.87933 1.90640 1.55702 1.52397 1.45119 1.46046 1.06844 1.58463 1.23982 1.21494 0.96940 0.94048 0.84807 0.90797 1.21761 0.98885 0.97706 0.97566 1.22136 0.98965 0.97127 0.99650 1.20814 0.91743 0.91308 0.91601 1.44166 1.42780 1.22937 1.21112 1.19172 0.94996 1.36268 0.88064 0.91156 1.25092 0.95878 1.01951 0.96430 1.70018 1.13485 1.46510 1.24438 0.86329 0.78724 0.78306 0.83602 1.21484 1.21828 1.20453 1.20720 0.87934 0.89845 0.96308 0.94451 1.21778 1.00983 0.98230 0.98265 0.92702 0.92921 0.92728 0.91251 0.92287 0.92966 0.92698 0.91370 0.91407 0.89292 0.89023 0.75606 0.93224 0.92075 0.93552 0.92884 0.96483 0.89434 0.93637 0.92773 0.91857 0.94257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.19 37.15 0.34 -0.90 16 2 C -0.10 -0.92 2.92 -90.62 -0.26 -1.18 16 3 C -0.15 -1.34 8.95 37.16 0.33 -1.01 16 4 C -0.10 -1.10 3.97 -26.73 -0.11 -1.21 16 5 C -0.14 -1.74 5.45 -27.88 -0.15 -1.89 16 6 C 0.51 8.11 7.80 -10.98 -0.09 8.02 16 7 O -0.56 -10.68 15.64 5.56 0.09 -10.60 16 8 N -0.70 -11.64 3.46 -53.69 -0.19 -11.82 16 9 C 0.13 2.40 2.33 -67.81 -0.16 2.24 16 10 H 0.07 1.35 7.58 -51.93 -0.39 0.96 16 11 C -0.12 -2.17 5.58 -26.69 -0.15 -2.32 16 12 C -0.14 -2.65 5.93 -26.61 -0.16 -2.81 16 13 C 0.17 3.89 5.29 -3.71 -0.02 3.87 16 14 N -0.59 -13.40 2.65 -164.77 -0.44 -13.83 16 15 C -0.26 -6.35 8.61 -15.06 -0.13 -6.48 16 16 H 0.07 1.69 6.20 -52.49 -0.33 1.37 16 17 C 0.01 0.15 4.96 -17.43 -0.09 0.06 16 18 N -0.90 -25.01 11.14 55.49 0.62 -24.40 16 19 Si 0.90 20.63 29.58 -169.99 -5.03 15.60 16 20 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 23 C 0.16 3.14 3.20 -67.59 -0.22 2.92 16 24 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 25 C -0.13 -2.43 7.72 37.16 0.29 -2.15 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.53 6.56 -51.93 -0.34 0.19 16 31 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 0.49 8.14 -51.92 -0.42 0.07 16 33 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 34 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 35 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.09 1.02 6.56 -51.93 -0.34 0.68 16 37 H 0.41 6.86 7.77 -40.82 -0.32 6.54 16 38 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.05 1.01 7.53 -51.93 -0.39 0.62 16 42 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.09 2.24 6.06 -51.93 -0.31 1.92 16 44 H 0.25 6.88 8.31 -40.82 -0.34 6.55 16 45 H 0.05 0.96 6.38 -51.93 -0.33 0.62 16 46 H 0.06 1.23 7.66 -51.93 -0.40 0.83 16 47 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 358.34 15.07 5.40 5.40 Total: -1.00 -28.21 358.34 -8.73 -36.94 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -8.62 Total: 5.53 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: -0.56 Total: -2.83 kcal Atomic # 7 Polarization: -50.05 SS G_CDS: 0.00 Total: -50.05 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.09 Total: -10.60 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.03 Total: 15.60 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -28.21 -8.73 -36.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755715035.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.131 kcal (2) G-P(sol) polarization free energy of solvation -28.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds