Wall clock time and date at job start Tue Mar 31 2020 06:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46978 * 2 1 4 4 C 1.53003 * 109.47036 * 119.99734 * 2 1 3 5 5 C 1.52997 * 109.47307 * 174.99976 * 4 2 1 6 6 C 1.50697 * 109.47074 * 179.97438 * 5 4 2 7 7 O 1.21278 * 120.00130 * 0.02562 * 6 5 4 8 8 N 1.34778 * 119.99754 * 179.97438 * 6 5 4 9 9 C 1.46504 * 120.00174 * 180.02562 * 8 6 5 10 10 H 1.09002 * 109.49276 * 324.94139 * 9 8 6 11 11 C 1.53033 * 109.49424 * 85.00220 * 9 8 6 12 12 C 1.53043 * 109.53706 * 181.31771 * 11 9 8 13 13 C 1.53192 * 109.31621 * 298.63970 * 12 11 9 14 14 N 1.46928 * 108.77535 * 54.63043 * 13 12 11 15 15 C 1.36939 * 120.62962 * 126.12113 * 14 13 12 16 16 H 1.08001 * 119.99774 * 220.94669 * 15 14 13 17 17 C 1.38810 * 119.99742 * 40.93976 * 15 14 13 18 18 N 1.31617 * 119.99844 * 214.93099 * 17 15 14 19 19 Si 1.86795 * 120.00095 * 34.93492 * 17 15 14 20 20 H 1.48497 * 109.47312 * 84.63019 * 19 17 15 21 21 H 1.48502 * 109.47041 * 204.62791 * 19 17 15 22 22 H 1.48496 * 109.47194 * 324.62661 * 19 17 15 23 23 C 1.46931 * 118.73642 * 306.39665 * 14 13 12 24 24 H 1.09001 * 109.58644 * 293.81784 * 23 14 13 25 25 C 1.53007 * 109.58312 * 173.39736 * 23 14 13 26 26 H 1.08997 * 109.47191 * 300.00450 * 1 2 3 27 27 H 1.09003 * 109.46967 * 60.00401 * 1 2 3 28 28 H 1.09003 * 109.47315 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47191 * 239.99550 * 2 1 3 30 30 H 1.08998 * 109.46752 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.46762 * 299.98865 * 3 2 1 32 32 H 1.08997 * 109.47527 * 59.99756 * 3 2 1 33 33 H 1.08998 * 109.47242 * 54.99713 * 4 2 1 34 34 H 1.09003 * 109.47063 * 295.00369 * 4 2 1 35 35 H 1.09007 * 109.46945 * 59.99870 * 5 4 2 36 36 H 1.08999 * 109.46920 * 300.00035 * 5 4 2 37 37 H 0.97003 * 120.00308 * 0.02562 * 8 6 5 38 38 H 1.08998 * 109.46139 * 61.30567 * 11 9 8 39 39 H 1.08996 * 109.46557 * 301.33732 * 11 9 8 40 40 H 1.09002 * 109.50267 * 178.68116 * 12 11 9 41 41 H 1.09005 * 109.49451 * 58.58904 * 12 11 9 42 42 H 1.09004 * 109.57985 * 294.84511 * 13 12 11 43 43 H 1.08991 * 109.58912 * 174.42085 * 13 12 11 44 44 H 0.96992 * 120.00338 * 180.02562 * 18 17 15 45 45 H 1.08997 * 109.46917 * 59.99550 * 25 23 14 46 46 H 1.08992 * 109.47035 * 179.97438 * 25 23 14 47 47 H 1.09004 * 109.46824 * 300.00073 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.8310 1.1881 6 6 4.0671 -1.5408 2.4189 7 8 3.2827 -1.9218 3.2618 8 7 5.3880 -1.7532 2.5824 9 6 5.8763 -2.4437 3.7787 10 1 5.2563 -2.1732 4.6334 11 6 5.8100 -3.9566 3.5579 12 6 6.2890 -4.6793 4.8190 13 6 7.7449 -4.2952 5.1010 14 7 7.8427 -2.8308 5.1708 15 6 8.3981 -2.2199 6.2633 16 1 7.9508 -1.3233 6.6661 17 6 9.5360 -2.7532 6.8528 18 7 9.6971 -2.6804 8.1571 19 14 10.8386 -3.5741 5.7952 20 1 11.7631 -2.5430 5.2592 21 1 11.6038 -4.5455 6.6174 22 1 10.1846 -4.2864 4.6683 23 6 7.3275 -2.0342 4.0488 24 1 7.9312 -2.2208 3.1606 25 6 7.3829 -0.5478 4.4072 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 3.1300 1.4424 -0.0005 31 1 1.6768 1.9562 -0.8901 32 1 1.6766 1.9564 0.8899 33 1 1.6054 -1.7197 1.2953 34 1 1.7516 -0.1582 2.1370 35 1 3.9994 0.1676 1.1421 36 1 3.8531 -1.3940 0.3004 37 1 6.0153 -1.4488 1.9081 38 1 6.4491 -4.2294 2.7182 39 1 4.7821 -4.2473 3.3412 40 1 6.2194 -5.7568 4.6696 41 1 5.6656 -4.3878 5.6643 42 1 8.3826 -4.6662 4.2986 43 1 8.0597 -4.7281 6.0505 44 1 10.4924 -3.0527 8.5691 45 1 8.4146 -0.2615 4.6113 46 1 7.0008 0.0414 3.5736 47 1 6.7731 -0.3644 5.2919 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755715036.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:11 Heat of formation + Delta-G solvation = -46.269990 kcal Electronic energy + Delta-G solvation = -23221.825502 eV Core-core repulsion = 20017.984970 eV Total energy + Delta-G solvation = -3203.840532 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.85202 -37.97353 -36.63280 -34.29692 -32.74143 -31.77743 -31.17550 -29.62276 -27.40864 -26.43897 -25.00039 -24.42293 -22.10275 -20.79974 -20.21556 -20.03802 -19.43052 -16.91437 -16.42755 -15.96579 -15.73688 -14.90028 -14.80197 -14.42735 -14.20948 -13.87803 -13.65169 -13.62724 -13.24374 -13.06275 -12.64208 -12.48264 -12.43711 -11.99108 -11.91039 -11.85212 -11.50570 -11.38104 -11.14984 -10.99388 -10.84305 -10.75938 -10.72901 -10.57257 -10.37960 -10.32586 -10.06301 -9.82681 -9.54078 -9.45334 -8.70317 -8.35729 -6.75322 -6.09524 -3.40372 2.85879 3.39105 3.39852 3.49919 3.54308 4.55814 4.59232 4.62908 4.68450 4.91887 4.97350 5.10474 5.22599 5.28761 5.37734 5.39017 5.42856 5.46837 5.53665 5.60673 5.64501 5.70048 5.80828 5.83685 5.86544 5.96111 5.99063 6.09796 6.15148 6.24139 6.26196 6.34447 6.36299 6.48518 6.55088 6.60791 6.71955 6.89731 6.91123 7.02333 7.12595 7.76503 8.01455 8.39553 8.48413 8.97839 9.70058 10.17854 11.05791 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.034367 B = 0.003514 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.528642 B = 7967.219326 C = 8253.998407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.098 4.098 3 C -0.151 4.151 4 C -0.099 4.099 5 C -0.142 4.142 6 C 0.508 3.492 7 O -0.544 6.544 8 N -0.722 5.722 9 C 0.131 3.869 10 H 0.088 0.912 11 C -0.117 4.117 12 C -0.134 4.134 13 C 0.141 3.859 14 N -0.590 5.590 15 C -0.277 4.277 16 H 0.077 0.923 17 C 0.052 3.948 18 N -0.878 5.878 19 Si 0.843 3.157 20 H -0.288 1.288 21 H -0.297 1.297 22 H -0.260 1.260 23 C 0.164 3.836 24 H 0.028 0.972 25 C -0.133 4.133 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.395 0.605 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.054 0.946 41 H 0.064 0.936 42 H 0.025 0.975 43 H 0.068 0.932 44 H 0.264 0.736 45 H 0.065 0.935 46 H 0.038 0.962 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.064 3.932 -17.507 21.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 C -0.208 4.208 4 C -0.137 4.137 5 C -0.183 4.183 6 C 0.295 3.705 7 O -0.421 6.421 8 N -0.372 5.372 9 C 0.025 3.975 10 H 0.106 0.894 11 C -0.156 4.156 12 C -0.174 4.174 13 C 0.016 3.984 14 N -0.315 5.315 15 C -0.405 4.405 16 H 0.094 0.906 17 C -0.151 4.151 18 N -0.517 5.517 19 Si 0.670 3.330 20 H -0.215 1.215 21 H -0.224 1.224 22 H -0.185 1.185 23 C 0.057 3.943 24 H 0.046 0.954 25 C -0.191 4.191 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.110 0.890 36 H 0.107 0.893 37 H 0.229 0.771 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.083 0.917 42 H 0.043 0.957 43 H 0.087 0.913 44 H 0.073 0.927 45 H 0.084 0.916 46 H 0.057 0.943 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.514 3.644 -16.691 21.177 hybrid contribution 1.295 -0.368 -0.874 1.605 sum -11.218 3.275 -17.565 21.097 Atomic orbital electron populations 1.21827 0.95197 1.01776 1.01650 1.21153 0.95850 0.96363 0.98315 1.21916 1.01162 0.96014 1.01708 1.21394 0.93014 1.01451 0.97814 1.21755 0.98097 1.01698 0.96704 1.20679 0.82418 0.79381 0.88062 1.90695 1.55310 1.51541 1.44558 1.46170 1.07213 1.59609 1.24253 1.21695 0.97596 0.91278 0.86933 0.89404 1.21757 1.00245 0.95278 0.98313 1.22039 0.99740 0.98297 0.97338 1.21350 0.92548 0.84724 0.99786 1.44278 1.69298 1.00302 1.17596 1.18573 1.06354 1.12749 1.02782 0.90555 1.25551 0.97499 0.97125 0.94954 1.70083 1.27658 1.45076 1.08864 0.87364 0.84004 0.79050 0.82551 1.21548 1.22389 1.18500 1.20699 0.90043 0.92213 0.91369 0.95414 1.21771 1.02726 0.94529 1.00049 0.92595 0.92871 0.92675 0.91309 0.92443 0.92924 0.92567 0.91286 0.91148 0.88960 0.89294 0.77128 0.92831 0.92819 0.92756 0.91729 0.95741 0.91344 0.92660 0.91599 0.94326 0.92408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.19 37.16 0.34 -0.75 16 2 C -0.10 -0.76 2.92 -90.62 -0.26 -1.02 16 3 C -0.15 -1.07 8.95 37.16 0.33 -0.74 16 4 C -0.10 -0.98 3.97 -26.73 -0.11 -1.09 16 5 C -0.14 -1.36 5.45 -27.89 -0.15 -1.52 16 6 C 0.51 7.15 7.79 -10.99 -0.09 7.06 16 7 O -0.54 -10.00 15.65 5.56 0.09 -9.91 16 8 N -0.72 -9.87 4.59 -53.70 -0.25 -10.12 16 9 C 0.13 2.27 1.99 -67.82 -0.14 2.13 16 10 H 0.09 1.81 7.58 -51.93 -0.39 1.42 16 11 C -0.12 -1.99 5.46 -26.69 -0.15 -2.13 16 12 C -0.13 -2.47 6.08 -26.61 -0.16 -2.63 16 13 C 0.14 3.04 4.59 -3.71 -0.02 3.02 16 14 N -0.59 -13.63 2.47 -164.77 -0.41 -14.04 16 15 C -0.28 -7.44 8.43 -15.06 -0.13 -7.57 16 16 H 0.08 2.21 6.81 -52.49 -0.36 1.85 16 17 C 0.05 1.44 4.81 -17.43 -0.08 1.36 16 18 N -0.88 -26.07 13.97 55.49 0.78 -25.30 16 19 Si 0.84 20.99 27.38 -169.99 -4.65 16.34 16 20 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 21 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 22 H -0.26 -6.19 5.24 56.52 0.30 -5.89 16 23 C 0.16 3.12 3.03 -67.60 -0.21 2.92 16 24 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 25 C -0.13 -2.43 7.95 37.16 0.30 -2.14 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.38 6.57 -51.93 -0.34 0.04 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.77 8.10 -51.93 -0.42 0.34 16 34 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 35 H 0.09 0.74 6.57 -51.93 -0.34 0.40 16 36 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.40 4.27 8.60 -40.82 -0.35 3.92 16 38 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 42 H 0.02 0.52 6.72 -51.93 -0.35 0.18 16 43 H 0.07 1.59 6.98 -51.93 -0.36 1.23 16 44 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 45 H 0.06 1.29 7.68 -51.93 -0.40 0.89 16 46 H 0.04 0.57 7.80 -51.93 -0.41 0.16 16 47 H 0.06 1.15 7.41 -51.93 -0.38 0.77 16 LS Contribution 359.08 15.07 5.41 5.41 Total: -1.00 -31.04 359.08 -8.39 -39.43 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -8.84 Total: 1.28 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: -0.51 Total: -3.09 kcal Atomic # 7 Polarization: -49.57 SS G_CDS: 0.12 Total: -49.45 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.09 Total: -9.91 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.65 Total: 16.34 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.04 -8.39 -39.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755715036.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.844 kcal (2) G-P(sol) polarization free energy of solvation -31.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds