Wall clock time and date at job start Tue Mar 31 2020 05:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47233 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46997 * 120.00173 * 8 6 4 11 11 H 1.48501 * 109.47364 * 240.00497 * 8 6 4 12 12 N 1.46894 * 109.47515 * 120.00133 * 2 1 3 13 13 C 1.46903 * 111.00408 * 176.04515 * 12 2 1 14 14 C 1.46897 * 111.00175 * 300.00375 * 12 2 1 15 15 C 1.50697 * 109.47561 * 169.99583 * 14 12 2 16 16 O 1.21280 * 119.99753 * 0.02562 * 15 14 12 17 17 N 1.34780 * 120.00316 * 179.97438 * 15 14 12 18 18 C 1.46495 * 119.99807 * 180.02562 * 17 15 14 19 19 C 1.54237 * 108.89848 * 277.88028 * 18 17 15 20 20 C 1.50475 * 108.52755 * 159.26666 * 19 18 17 21 21 C 1.54065 * 112.49902 * 94.15416 * 20 19 18 22 22 C 1.54066 * 112.81492 * 318.28380 * 21 20 19 23 23 C 1.50478 * 112.49989 * 318.28542 * 22 21 20 24 24 C 1.45551 * 108.89518 * 155.00026 * 18 17 15 25 25 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 28 28 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 29 29 H 1.08995 * 109.46799 * 60.00117 * 13 12 2 30 30 H 1.08994 * 109.47282 * 180.02562 * 13 12 2 31 31 H 1.08999 * 109.46910 * 300.00279 * 13 12 2 32 32 H 1.09004 * 109.47033 * 289.99910 * 14 12 2 33 33 H 1.08999 * 109.47167 * 49.99404 * 14 12 2 34 34 H 0.97001 * 119.99876 * 359.97438 * 17 15 14 35 35 H 1.09002 * 108.87543 * 36.40028 * 18 17 15 36 36 H 1.09003 * 109.63339 * 278.98250 * 19 18 17 37 37 H 1.09000 * 109.62432 * 39.55665 * 19 18 17 38 38 H 1.09002 * 108.87586 * 333.37502 * 20 19 18 39 39 H 1.08999 * 108.87544 * 214.93093 * 20 19 18 40 40 H 1.08997 * 108.81439 * 197.42787 * 21 20 19 41 41 H 1.08997 * 108.73102 * 79.08469 * 21 20 19 42 42 H 1.09007 * 108.87846 * 197.50758 * 22 21 20 43 43 H 1.09003 * 108.87666 * 79.06387 * 22 21 20 44 44 H 1.09006 * 109.62624 * 334.44713 * 23 22 21 45 45 H 1.08997 * 109.62974 * 213.86217 * 23 22 21 46 46 H 1.09001 * 108.89347 * 303.44336 * 24 18 17 47 47 H 1.08997 * 108.89111 * 62.02640 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 3.1455 -2.2874 -3.6040 10 1 1.1660 -1.5865 -4.8161 11 1 3.1465 -0.1871 -4.8166 12 7 2.0197 -0.6925 1.1993 13 6 3.4851 -0.7945 1.1869 14 6 1.5487 -0.0265 2.4210 15 6 1.8580 -0.8913 3.6158 16 8 2.4163 -1.9572 3.4645 17 7 1.5151 -0.4796 4.8526 18 6 1.8163 -1.3201 6.0140 19 6 0.7188 -2.3951 6.1509 20 6 1.2614 -3.5301 6.9765 21 6 0.9118 -3.3920 8.4706 22 6 1.0614 -1.9486 8.9882 23 6 2.2967 -1.2720 8.4586 24 6 1.9149 -0.4747 7.1947 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 0.7093 1.1619 -3.4844 29 1 3.9187 0.2051 1.1591 30 1 3.8210 -1.3117 2.0857 31 1 3.8030 -1.3531 0.3066 32 1 2.0519 0.9345 2.5280 33 1 0.4723 0.1323 2.3563 34 1 1.0696 0.3735 4.9736 35 1 2.7744 -1.8142 5.8527 36 1 -0.1534 -1.9671 6.6451 37 1 0.4401 -2.7616 5.1629 38 1 2.3458 -3.5573 6.8690 39 1 0.8483 -4.4669 6.6028 40 1 1.5699 -4.0421 9.0471 41 1 -0.1187 -3.7140 8.6201 42 1 1.1090 -1.9675 10.0770 43 1 0.1867 -1.3729 8.6853 44 1 3.0454 -2.0228 8.2056 45 1 2.6947 -0.5936 9.2132 46 1 2.6707 0.2908 7.0186 47 1 0.9536 0.0109 7.3623 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063095358.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:59 Heat of formation + Delta-G solvation = -42.629526 kcal Electronic energy + Delta-G solvation = -23140.000145 eV Core-core repulsion = 19936.317475 eV Total energy + Delta-G solvation = -3203.682670 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.13477 -38.44098 -36.35964 -34.46929 -32.68777 -32.34007 -30.93760 -29.17032 -27.76713 -25.17293 -24.86877 -24.22894 -23.21371 -20.90582 -20.33789 -19.44488 -19.20199 -16.95435 -16.48823 -16.08367 -15.58782 -15.28739 -14.82070 -14.56976 -14.30124 -13.84244 -13.60221 -13.49989 -13.31691 -13.16786 -12.54441 -12.42325 -12.34481 -12.23591 -11.62942 -11.48953 -11.18557 -11.06361 -10.95793 -10.81761 -10.75852 -10.68498 -10.58946 -10.52579 -10.44727 -10.12660 -10.06183 -9.92383 -9.15478 -8.88252 -8.76991 -8.40111 -7.11184 -5.99373 -4.02687 3.08566 3.31749 3.32550 3.40210 3.46538 4.39821 4.44476 4.57942 4.62607 4.92541 4.93853 5.04225 5.08672 5.13666 5.17941 5.32999 5.35030 5.40023 5.51562 5.65742 5.74956 5.79912 5.84489 5.89878 5.91119 5.93739 5.99507 6.04895 6.14821 6.24875 6.31543 6.39591 6.50207 6.69429 6.80993 6.97443 7.03949 7.16833 7.50194 7.65651 7.80181 7.87443 8.22230 8.34198 8.58893 8.69121 9.04717 9.62224 11.07892 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.039632 B = 0.003128 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.326755 B = 8949.202986 C = 9071.894959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.211 3.789 3 H -0.001 1.001 4 C -0.500 4.500 5 H 0.066 0.934 6 C 0.058 3.942 7 N -0.896 5.896 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.286 1.286 12 N -0.519 5.519 13 C 0.035 3.965 14 C 0.031 3.969 15 C 0.515 3.485 16 O -0.518 6.518 17 N -0.742 5.742 18 C 0.150 3.850 19 C -0.124 4.124 20 C -0.116 4.116 21 C -0.117 4.117 22 C -0.120 4.120 23 C -0.111 4.111 24 C -0.128 4.128 25 H 0.006 0.994 26 H 0.036 0.964 27 H 0.087 0.913 28 H 0.259 0.741 29 H 0.004 0.996 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.048 0.952 33 H 0.101 0.899 34 H 0.395 0.605 35 H 0.081 0.919 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.061 0.939 44 H 0.069 0.931 45 H 0.065 0.935 46 H 0.066 0.934 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.557 -1.400 22.578 22.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.106 3.894 3 H 0.016 0.984 4 C -0.538 4.538 5 H 0.084 0.916 6 C -0.143 4.143 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.212 1.212 12 N -0.244 5.244 13 C -0.113 4.113 14 C -0.100 4.100 15 C 0.301 3.699 16 O -0.392 6.392 17 N -0.395 5.395 18 C 0.046 3.954 19 C -0.163 4.163 20 C -0.154 4.154 21 C -0.155 4.155 22 C -0.157 4.157 23 C -0.149 4.149 24 C -0.166 4.166 25 H 0.025 0.975 26 H 0.055 0.945 27 H 0.105 0.895 28 H 0.069 0.931 29 H 0.022 0.978 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.065 0.935 33 H 0.119 0.881 34 H 0.228 0.772 35 H 0.099 0.901 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.080 0.920 44 H 0.087 0.913 45 H 0.084 0.916 46 H 0.084 0.916 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.403 -2.557 22.274 22.424 hybrid contribution 0.273 0.920 -0.814 1.259 sum -0.130 -1.637 21.459 21.522 Atomic orbital electron populations 1.21880 0.97767 0.99800 0.99790 1.19310 0.92306 0.91968 0.85846 0.98382 1.21203 1.30775 1.12249 0.89579 0.91635 1.24925 0.95244 0.95112 0.99030 1.69894 1.37190 1.23147 1.23286 0.86447 0.78596 0.79656 0.82784 1.19665 1.21041 1.21182 1.61866 1.10231 1.51793 1.00514 1.22324 0.87888 0.98555 1.02542 1.22027 1.02755 0.94632 0.90616 1.21009 0.77732 0.87240 0.83876 1.90636 1.40395 1.22888 1.85281 1.46334 1.63416 1.23440 1.06341 1.19808 0.99218 0.91545 0.84851 1.21707 0.98087 0.95860 1.00635 1.21246 1.01472 0.98591 0.94135 1.21934 1.01264 0.96372 0.95902 1.21362 0.98304 0.96197 0.99861 1.21229 0.98208 0.99221 0.96287 1.20767 1.02321 0.98783 0.94716 0.97464 0.94512 0.89480 0.93082 0.97763 0.92044 0.90719 0.93460 0.88072 0.77160 0.90122 0.91797 0.91070 0.91920 0.92117 0.92412 0.92419 0.92442 0.92011 0.91271 0.91610 0.91555 0.91588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.28 8.76 37.16 0.33 -2.95 16 2 C 0.21 5.43 2.06 -68.87 -0.14 5.29 16 3 H 0.00 -0.04 8.14 -51.93 -0.42 -0.46 16 4 C -0.50 -14.02 7.93 -34.44 -0.27 -14.29 16 5 H 0.07 1.87 6.39 -52.49 -0.34 1.53 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 7 N -0.90 -25.63 11.32 55.43 0.63 -25.00 16 8 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 9 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 N -0.52 -11.87 4.36 -237.74 -1.04 -12.91 16 13 C 0.04 0.77 8.89 60.07 0.53 1.31 16 14 C 0.03 0.57 5.26 -4.98 -0.03 0.55 16 15 C 0.51 8.72 7.26 -10.99 -0.08 8.64 16 16 O -0.52 -10.67 14.00 5.56 0.08 -10.59 16 17 N -0.74 -9.13 5.03 -56.63 -0.28 -9.42 16 18 C 0.15 1.66 1.94 -70.80 -0.14 1.52 16 19 C -0.12 -1.37 5.18 -27.35 -0.14 -1.51 16 20 C -0.12 -1.14 5.31 -27.44 -0.15 -1.28 16 21 C -0.12 -0.91 5.85 -25.62 -0.15 -1.06 16 22 C -0.12 -0.84 5.31 -27.43 -0.15 -0.98 16 23 C -0.11 -0.81 5.61 -27.35 -0.15 -0.96 16 24 C -0.13 -1.05 4.60 -29.60 -0.14 -1.19 16 25 H 0.01 0.14 6.20 -51.93 -0.32 -0.18 16 26 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.09 2.32 6.07 -51.93 -0.32 2.00 16 28 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 30 H 0.06 1.30 5.82 -51.93 -0.30 1.00 16 31 H 0.07 1.74 6.23 -51.93 -0.32 1.41 16 32 H 0.05 0.81 8.12 -51.93 -0.42 0.38 16 33 H 0.10 1.76 5.83 -51.93 -0.30 1.46 16 34 H 0.39 3.79 8.55 -40.82 -0.35 3.44 16 35 H 0.08 1.07 6.91 -51.93 -0.36 0.71 16 36 H 0.06 0.63 6.98 -51.93 -0.36 0.26 16 37 H 0.07 0.99 7.90 -51.93 -0.41 0.58 16 38 H 0.06 0.65 6.63 -51.93 -0.34 0.30 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.35 8.14 -51.92 -0.42 -0.07 16 43 H 0.06 0.44 6.63 -51.93 -0.34 0.09 16 44 H 0.07 0.55 6.98 -51.93 -0.36 0.18 16 45 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.07 0.48 7.46 -51.93 -0.39 0.10 16 LS Contribution 349.15 15.07 5.26 5.26 Total: -1.00 -31.17 349.15 -9.32 -40.50 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -8.18 Total: 0.87 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: -0.77 Total: -5.40 kcal Atomic # 7 Polarization: -46.64 SS G_CDS: -0.69 Total: -47.33 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.08 Total: -10.59 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.17 -9.32 -40.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063095358.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.133 kcal (2) G-P(sol) polarization free energy of solvation -31.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds