Wall clock time and date at job start Tue Mar 31 2020 05:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46986 * 2 1 4 4 C 1.53002 * 109.47131 * 119.99786 * 2 1 3 5 5 C 1.52996 * 109.47082 * 177.19526 * 4 2 1 6 6 H 1.09000 * 109.46931 * 57.76898 * 5 4 2 7 7 C 1.52999 * 109.47290 * 177.76685 * 5 4 2 8 8 C 1.53001 * 109.47111 * 297.76477 * 5 4 2 9 9 C 1.50695 * 109.47171 * 174.99972 * 8 5 4 10 10 O 1.21284 * 119.99829 * 0.02562 * 9 8 5 11 11 N 1.34781 * 120.00301 * 180.02562 * 9 8 5 12 12 C 1.46960 * 120.58916 * 359.72119 * 11 9 8 13 13 C 1.53372 * 108.63841 * 125.04976 * 12 11 9 14 14 N 1.46963 * 108.63049 * 49.41927 * 13 12 11 15 15 C 1.36935 * 120.59233 * 124.75685 * 14 13 12 16 16 H 1.08008 * 120.00268 * 206.43841 * 15 14 13 17 17 C 1.38809 * 120.00303 * 26.43704 * 15 14 13 18 18 N 1.31612 * 120.00463 * 213.43680 * 17 15 14 19 19 Si 1.86802 * 119.99646 * 33.43611 * 17 15 14 20 20 H 1.48504 * 109.47401 * 92.74774 * 19 17 15 21 21 H 1.48510 * 109.47165 * 212.74401 * 19 17 15 22 22 H 1.48494 * 109.47380 * 332.74482 * 19 17 15 23 23 C 1.46964 * 118.81491 * 304.77415 * 14 13 12 24 24 C 1.46963 * 120.59397 * 180.02562 * 11 9 8 25 25 H 1.09006 * 109.46696 * 299.99946 * 1 2 3 26 26 H 1.08997 * 109.47170 * 59.99781 * 1 2 3 27 27 H 1.09004 * 109.47160 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46762 * 239.99803 * 2 1 3 29 29 H 1.08998 * 109.47303 * 66.43210 * 3 2 1 30 30 H 1.09003 * 109.46985 * 186.43745 * 3 2 1 31 31 H 1.09005 * 109.46928 * 306.43498 * 3 2 1 32 32 H 1.09003 * 109.46825 * 57.19122 * 4 2 1 33 33 H 1.09004 * 109.47335 * 297.19645 * 4 2 1 34 34 H 1.09000 * 109.47140 * 296.39701 * 7 5 4 35 35 H 1.09004 * 109.47053 * 56.39442 * 7 5 4 36 36 H 1.08990 * 109.47439 * 176.39443 * 7 5 4 37 37 H 1.09001 * 109.46809 * 55.00002 * 8 5 4 38 38 H 1.08993 * 109.47283 * 295.00459 * 8 5 4 39 39 H 1.09004 * 109.60768 * 244.79265 * 12 11 9 40 40 H 1.09001 * 109.61230 * 5.30268 * 12 11 9 41 41 H 1.09004 * 109.60631 * 289.67913 * 13 12 11 42 42 H 1.08991 * 109.75418 * 169.25227 * 13 12 11 43 43 H 0.97002 * 120.00109 * 179.97438 * 18 17 15 44 44 H 1.08994 * 109.61515 * 295.48167 * 23 14 13 45 45 H 1.09001 * 109.75040 * 175.05378 * 23 14 13 46 46 H 1.09003 * 109.61176 * 354.69309 * 24 11 9 47 47 H 1.08999 * 109.61015 * 115.03466 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5684 -0.7826 1.2145 6 1 3.9712 0.2281 1.1490 7 6 4.0810 -1.4542 2.4900 8 6 4.0187 -1.5912 -0.0039 9 6 5.5215 -1.5489 -0.1073 10 8 6.1687 -0.9330 0.7129 11 7 6.1464 -2.1953 -1.1114 12 6 5.3754 -2.9505 -2.1089 13 6 5.7475 -2.4388 -3.5060 14 7 7.2124 -2.4062 -3.6194 15 6 7.8476 -3.0681 -4.6360 16 1 8.8643 -3.4089 -4.5063 17 6 7.1850 -3.3010 -5.8333 18 7 7.4305 -4.3973 -6.5189 19 14 5.9448 -2.0584 -6.4714 20 1 6.6239 -1.1064 -7.3868 21 1 4.8665 -2.7676 -7.2061 22 1 5.3579 -1.3132 -5.3289 23 6 7.9834 -1.6510 -2.6219 24 6 7.6113 -2.1632 -1.2244 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.7737 1.9220 0.9419 30 1 3.1239 1.4447 -0.1152 31 1 1.5856 1.9885 -0.8268 32 1 1.6362 -1.7333 1.2748 33 1 1.7184 -0.1792 2.1386 34 1 3.8152 -0.8446 3.3536 35 1 3.6281 -2.4408 2.5885 36 1 5.1649 -1.5558 2.4368 37 1 3.5802 -1.1639 -0.9057 38 1 3.6909 -2.6250 0.1048 39 1 5.6165 -4.0108 -2.0315 40 1 4.3094 -2.8017 -1.9367 41 1 5.3473 -1.4347 -3.6464 42 1 5.3367 -3.1056 -4.2640 43 1 6.9672 -4.5602 -7.3554 44 1 7.7425 -0.5908 -2.6993 45 1 9.0499 -1.7971 -2.7929 46 1 8.0220 -1.4942 -0.4681 47 1 8.0114 -3.1669 -1.0811 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073100550.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:28 Heat of formation + Delta-G solvation = -26.228565 kcal Electronic energy + Delta-G solvation = -23647.494670 eV Core-core repulsion = 20444.523199 eV Total energy + Delta-G solvation = -3202.971471 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.00850 -37.87181 -36.82637 -33.95438 -33.56252 -31.66545 -30.77256 -28.40424 -27.34532 -26.73089 -26.60751 -23.50913 -23.22703 -21.38711 -20.69274 -19.53140 -18.53236 -17.30385 -16.25344 -15.94331 -15.58708 -15.02413 -14.80621 -14.49402 -14.34746 -14.03307 -13.77624 -13.68979 -13.13083 -12.97453 -12.73457 -12.64708 -12.40231 -12.17122 -12.09416 -11.98417 -11.87941 -11.55386 -11.39313 -11.13662 -10.98298 -10.84479 -10.57847 -10.47408 -10.41771 -10.36714 -10.30537 -10.15788 -9.43404 -9.31741 -8.75443 -8.21714 -7.04169 -6.09427 -3.33582 2.92661 3.30275 3.36449 3.44338 3.50023 4.48853 4.55259 4.63093 4.72301 4.82644 4.88477 4.94659 5.16653 5.23316 5.33734 5.45148 5.46710 5.48776 5.54775 5.61115 5.62498 5.66489 5.72589 5.76453 5.80192 5.83476 5.89194 5.90767 5.99211 6.03556 6.06891 6.10693 6.15388 6.24048 6.29065 6.41855 6.45353 6.48261 6.55864 6.73101 6.94658 7.79919 7.85538 8.22560 8.49994 8.85323 9.63834 10.02592 11.05147 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018578 B = 0.004778 C = 0.004092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.826266 B = 5858.719110 C = 6840.505894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.103 4.103 3 C -0.150 4.150 4 C -0.109 4.109 5 C -0.076 4.076 6 H 0.080 0.920 7 C -0.152 4.152 8 C -0.139 4.139 9 C 0.510 3.490 10 O -0.554 6.554 11 N -0.601 5.601 12 C 0.085 3.915 13 C 0.131 3.869 14 N -0.601 5.601 15 C -0.273 4.273 16 H 0.083 0.917 17 C 0.037 3.963 18 N -0.886 5.886 19 Si 0.835 3.165 20 H -0.292 1.292 21 H -0.294 1.294 22 H -0.251 1.251 23 C 0.134 3.866 24 C 0.095 3.905 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.073 0.927 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.048 0.952 35 H 0.045 0.955 36 H 0.075 0.925 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.034 0.966 42 H 0.076 0.924 43 H 0.263 0.737 44 H 0.026 0.974 45 H 0.074 0.926 46 H 0.084 0.916 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.047 6.318 14.259 19.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.121 4.121 3 C -0.207 4.207 4 C -0.147 4.147 5 C -0.094 4.094 6 H 0.098 0.902 7 C -0.209 4.209 8 C -0.178 4.178 9 C 0.299 3.701 10 O -0.433 6.433 11 N -0.333 5.333 12 C -0.039 4.039 13 C 0.004 3.996 14 N -0.324 5.324 15 C -0.400 4.400 16 H 0.101 0.899 17 C -0.164 4.164 18 N -0.527 5.527 19 Si 0.663 3.337 20 H -0.220 1.220 21 H -0.221 1.221 22 H -0.176 1.176 23 C 0.007 3.993 24 C -0.029 4.029 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.091 0.909 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.094 0.906 37 H 0.111 0.889 38 H 0.108 0.892 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.052 0.948 42 H 0.095 0.905 43 H 0.073 0.927 44 H 0.044 0.956 45 H 0.092 0.908 46 H 0.102 0.898 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.699 6.509 14.513 19.745 hybrid contribution -0.717 0.534 -0.833 1.222 sum -12.416 7.042 13.679 19.771 Atomic orbital electron populations 1.21843 0.95460 1.01562 1.01538 1.21217 0.95453 0.96611 0.98838 1.21890 1.01475 0.95868 1.01443 1.21727 0.94914 1.00400 0.97627 1.20929 0.94477 1.00131 0.93895 0.90203 1.21936 1.03177 0.99392 0.96366 1.21835 0.92769 1.02554 1.00675 1.20656 0.90353 0.78542 0.80536 1.90604 1.67844 1.43797 1.41080 1.48073 1.07792 1.50533 1.26915 1.22507 0.94676 0.96341 0.90403 1.21816 0.85691 0.98654 0.93426 1.44279 1.00656 1.58028 1.29465 1.18820 1.00538 1.29305 0.91332 0.89905 1.25208 0.97675 0.96888 0.96664 1.70044 1.43824 1.22208 1.16610 0.87734 0.81460 0.84336 0.80218 1.22000 1.22073 1.17609 1.21333 0.96621 0.93846 0.87489 1.22187 0.79397 1.01774 0.99524 0.92918 0.92832 0.92785 0.90887 0.92851 0.92269 0.92952 0.91989 0.91825 0.93257 0.93594 0.90616 0.88898 0.89249 0.91015 0.90692 0.94778 0.90547 0.92708 0.95626 0.90781 0.89759 0.91679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.19 37.16 0.34 -0.82 16 2 C -0.10 -0.92 2.72 -90.62 -0.25 -1.17 16 3 C -0.15 -1.39 8.73 37.16 0.32 -1.07 16 4 C -0.11 -0.99 4.21 -26.73 -0.11 -1.10 16 5 C -0.08 -0.84 1.84 -90.62 -0.17 -1.01 16 6 H 0.08 1.01 6.35 -51.93 -0.33 0.68 16 7 C -0.15 -1.74 8.97 37.16 0.33 -1.41 16 8 C -0.14 -1.67 3.34 -27.88 -0.09 -1.77 16 9 C 0.51 8.12 7.39 -10.99 -0.08 8.04 16 10 O -0.55 -10.13 13.38 5.55 0.07 -10.06 16 11 N -0.60 -10.11 2.95 -172.46 -0.51 -10.62 16 12 C 0.09 1.40 6.50 -3.60 -0.02 1.38 16 13 C 0.13 2.66 4.45 -3.60 -0.02 2.64 16 14 N -0.60 -13.71 2.71 -172.02 -0.47 -14.18 16 15 C -0.27 -7.32 9.89 -15.06 -0.15 -7.46 16 16 H 0.08 2.38 8.06 -52.48 -0.42 1.96 16 17 C 0.04 1.01 4.92 -17.43 -0.09 0.93 16 18 N -0.89 -26.11 13.97 55.49 0.78 -25.33 16 19 Si 0.84 20.38 26.37 -169.99 -4.48 15.89 16 20 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 21 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 22 H -0.25 -5.70 4.49 56.52 0.25 -5.45 16 23 C 0.13 2.61 6.67 -3.57 -0.02 2.59 16 24 C 0.10 1.66 6.60 -3.57 -0.02 1.64 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.69 6.24 -51.93 -0.32 0.37 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.62 6.79 -51.93 -0.35 0.27 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.07 1.07 5.89 -51.93 -0.31 0.76 16 37 H 0.09 1.06 5.77 -51.93 -0.30 0.76 16 38 H 0.09 0.96 7.91 -51.93 -0.41 0.55 16 39 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 40 H 0.07 0.98 5.92 -51.93 -0.31 0.67 16 41 H 0.03 0.70 6.63 -51.93 -0.34 0.36 16 42 H 0.08 1.66 5.37 -51.93 -0.28 1.38 16 43 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 44 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.07 1.41 7.93 -51.93 -0.41 0.99 16 46 H 0.08 1.44 6.99 -51.93 -0.36 1.07 16 47 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 349.38 15.07 5.27 5.27 Total: -1.00 -30.21 349.38 -7.87 -38.08 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -8.51 Total: -0.46 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: -0.02 Total: 1.40 kcal Atomic # 7 Polarization: -49.93 SS G_CDS: -0.20 Total: -50.13 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.07 Total: -10.06 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -4.48 Total: 15.89 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.21 -7.87 -38.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073100550.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.853 kcal (2) G-P(sol) polarization free energy of solvation -30.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds