Wall clock time and date at job start Tue Mar 31 2020 05:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46986 * 2 1 4 4 C 1.53002 * 109.47131 * 119.99786 * 2 1 3 5 5 C 1.52996 * 109.47082 * 177.19526 * 4 2 1 6 6 H 1.09000 * 109.46931 * 57.76898 * 5 4 2 7 7 C 1.52999 * 109.47290 * 177.76685 * 5 4 2 8 8 C 1.53001 * 109.47111 * 297.76477 * 5 4 2 9 9 C 1.50695 * 109.47171 * 174.99972 * 8 5 4 10 10 O 1.21284 * 119.99829 * 0.02562 * 9 8 5 11 11 N 1.34781 * 120.00301 * 180.02562 * 9 8 5 12 12 C 1.46960 * 120.58916 * 359.72119 * 11 9 8 13 13 C 1.53372 * 108.63841 * 125.04976 * 12 11 9 14 14 N 1.46963 * 108.63049 * 49.41927 * 13 12 11 15 15 C 1.36935 * 120.59233 * 124.75685 * 14 13 12 16 16 H 1.08008 * 120.00268 * 206.43841 * 15 14 13 17 17 C 1.38809 * 120.00303 * 26.43704 * 15 14 13 18 18 N 1.31612 * 120.00463 * 213.43680 * 17 15 14 19 19 Si 1.86802 * 119.99646 * 33.43611 * 17 15 14 20 20 H 1.48504 * 109.47401 * 92.74774 * 19 17 15 21 21 H 1.48510 * 109.47165 * 212.74401 * 19 17 15 22 22 H 1.48494 * 109.47380 * 332.74482 * 19 17 15 23 23 C 1.46964 * 118.81491 * 304.77415 * 14 13 12 24 24 C 1.46963 * 120.59397 * 180.02562 * 11 9 8 25 25 H 1.09006 * 109.46696 * 299.99946 * 1 2 3 26 26 H 1.08997 * 109.47170 * 59.99781 * 1 2 3 27 27 H 1.09004 * 109.47160 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46762 * 239.99803 * 2 1 3 29 29 H 1.08998 * 109.47303 * 66.43210 * 3 2 1 30 30 H 1.09003 * 109.46985 * 186.43745 * 3 2 1 31 31 H 1.09005 * 109.46928 * 306.43498 * 3 2 1 32 32 H 1.09003 * 109.46825 * 57.19122 * 4 2 1 33 33 H 1.09004 * 109.47335 * 297.19645 * 4 2 1 34 34 H 1.09000 * 109.47140 * 296.39701 * 7 5 4 35 35 H 1.09004 * 109.47053 * 56.39442 * 7 5 4 36 36 H 1.08990 * 109.47439 * 176.39443 * 7 5 4 37 37 H 1.09001 * 109.46809 * 55.00002 * 8 5 4 38 38 H 1.08993 * 109.47283 * 295.00459 * 8 5 4 39 39 H 1.09004 * 109.60768 * 244.79265 * 12 11 9 40 40 H 1.09001 * 109.61230 * 5.30268 * 12 11 9 41 41 H 1.09004 * 109.60631 * 289.67913 * 13 12 11 42 42 H 1.08991 * 109.75418 * 169.25227 * 13 12 11 43 43 H 0.97002 * 120.00109 * 179.97438 * 18 17 15 44 44 H 1.08994 * 109.61515 * 295.48167 * 23 14 13 45 45 H 1.09001 * 109.75040 * 175.05378 * 23 14 13 46 46 H 1.09003 * 109.61176 * 354.69309 * 24 11 9 47 47 H 1.08999 * 109.61015 * 115.03466 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5684 -0.7826 1.2145 6 1 3.9712 0.2281 1.1490 7 6 4.0810 -1.4542 2.4900 8 6 4.0187 -1.5912 -0.0039 9 6 5.5215 -1.5489 -0.1073 10 8 6.1687 -0.9330 0.7129 11 7 6.1464 -2.1953 -1.1114 12 6 5.3754 -2.9505 -2.1089 13 6 5.7475 -2.4388 -3.5060 14 7 7.2124 -2.4062 -3.6194 15 6 7.8476 -3.0681 -4.6360 16 1 8.8643 -3.4089 -4.5063 17 6 7.1850 -3.3010 -5.8333 18 7 7.4305 -4.3973 -6.5189 19 14 5.9448 -2.0584 -6.4714 20 1 6.6239 -1.1064 -7.3868 21 1 4.8665 -2.7676 -7.2061 22 1 5.3579 -1.3132 -5.3289 23 6 7.9834 -1.6510 -2.6219 24 6 7.6113 -2.1632 -1.2244 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.7737 1.9220 0.9419 30 1 3.1239 1.4447 -0.1152 31 1 1.5856 1.9885 -0.8268 32 1 1.6362 -1.7333 1.2748 33 1 1.7184 -0.1792 2.1386 34 1 3.8152 -0.8446 3.3536 35 1 3.6281 -2.4408 2.5885 36 1 5.1649 -1.5558 2.4368 37 1 3.5802 -1.1639 -0.9057 38 1 3.6909 -2.6250 0.1048 39 1 5.6165 -4.0108 -2.0315 40 1 4.3094 -2.8017 -1.9367 41 1 5.3473 -1.4347 -3.6464 42 1 5.3367 -3.1056 -4.2640 43 1 6.9672 -4.5602 -7.3554 44 1 7.7425 -0.5908 -2.6993 45 1 9.0499 -1.7971 -2.7929 46 1 8.0220 -1.4942 -0.4681 47 1 8.0114 -3.1669 -1.0811 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073100550.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:27 Heat of formation + Delta-G solvation = -43.246579 kcal Electronic energy + Delta-G solvation = -23648.232626 eV Core-core repulsion = 20444.523199 eV Total energy + Delta-G solvation = -3203.709427 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.26416 -39.02890 -38.04024 -35.61437 -34.41718 -33.54814 -32.29821 -29.66204 -28.24165 -27.95308 -27.39140 -25.21447 -24.75970 -22.65638 -21.73095 -20.57333 -19.79751 -18.81074 -17.84886 -17.23327 -16.90850 -16.42506 -16.03860 -15.93913 -15.48332 -15.27893 -14.93779 -14.77107 -14.70319 -14.25242 -14.07387 -13.85794 -13.70770 -13.46686 -13.09451 -12.97442 -12.76611 -12.69175 -12.55420 -12.34021 -12.23820 -12.13987 -12.08563 -11.86914 -11.80913 -11.34436 -11.29755 -11.21230 -11.13093 -10.69934 -10.55759 -9.81594 -8.87594 -8.21110 -5.42491 1.35904 1.48619 1.53319 1.69535 2.05728 2.45050 2.96685 3.36868 3.57444 3.81227 3.90920 4.09288 4.13117 4.14962 4.22776 4.34751 4.35049 4.43707 4.50148 4.57929 4.66254 4.71776 4.72730 4.75585 4.79290 4.85096 4.86257 4.92161 4.99927 5.01382 5.05283 5.14680 5.17621 5.17926 5.23415 5.32111 5.44158 5.52349 5.56097 5.61167 5.62405 5.84539 6.10159 6.52951 6.89253 7.23975 7.61188 8.02543 8.96986 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018578 B = 0.004778 C = 0.004092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.826266 B = 5858.719110 C = 6840.505894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.103 4.103 3 C -0.150 4.150 4 C -0.101 4.101 5 C -0.072 4.072 6 H 0.061 0.939 7 C -0.149 4.149 8 C -0.134 4.134 9 C 0.508 3.492 10 O -0.580 6.580 11 N -0.607 5.607 12 C 0.097 3.903 13 C 0.124 3.876 14 N -0.614 5.614 15 C -0.264 4.264 16 H 0.049 0.951 17 C -0.014 4.014 18 N -0.935 5.935 19 Si 0.898 3.102 20 H -0.307 1.307 21 H -0.294 1.294 22 H -0.222 1.222 23 C 0.134 3.866 24 C 0.104 3.896 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.071 0.929 29 H 0.056 0.944 30 H 0.043 0.957 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.056 0.944 35 H 0.059 0.941 36 H 0.046 0.954 37 H 0.106 0.894 38 H 0.112 0.888 39 H 0.067 0.933 40 H 0.117 0.883 41 H 0.041 0.959 42 H 0.063 0.937 43 H 0.263 0.737 44 H 0.029 0.971 45 H 0.071 0.929 46 H 0.088 0.912 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.858 7.116 15.600 22.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.121 4.121 3 C -0.207 4.207 4 C -0.139 4.139 5 C -0.090 4.090 6 H 0.080 0.920 7 C -0.206 4.206 8 C -0.173 4.173 9 C 0.299 3.701 10 O -0.460 6.460 11 N -0.340 5.340 12 C -0.027 4.027 13 C -0.002 4.002 14 N -0.338 5.338 15 C -0.393 4.393 16 H 0.067 0.933 17 C -0.212 4.212 18 N -0.579 5.579 19 Si 0.726 3.274 20 H -0.236 1.236 21 H -0.221 1.221 22 H -0.145 1.145 23 C 0.008 3.992 24 C -0.020 4.020 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.065 0.935 37 H 0.124 0.876 38 H 0.130 0.870 39 H 0.086 0.914 40 H 0.135 0.865 41 H 0.058 0.942 42 H 0.081 0.919 43 H 0.072 0.928 44 H 0.047 0.953 45 H 0.089 0.911 46 H 0.107 0.893 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.539 7.335 15.897 22.758 hybrid contribution 0.255 0.300 -1.161 1.226 sum -14.284 7.635 14.736 21.898 Atomic orbital electron populations 1.21819 0.94510 1.02082 1.01793 1.21222 0.96222 0.96055 0.98629 1.21889 1.00463 0.96544 1.01794 1.21662 0.92956 1.01277 0.97957 1.20885 0.95994 0.98864 0.93303 0.92044 1.21887 1.01260 1.00448 0.97014 1.21918 0.89526 1.04198 1.01698 1.21357 0.91905 0.77326 0.79514 1.90604 1.68858 1.44678 1.41909 1.48167 1.07329 1.50998 1.27474 1.22383 0.96896 0.95713 0.87751 1.21898 0.83880 0.98737 0.95691 1.44384 1.02057 1.58384 1.28968 1.18734 0.99458 1.28514 0.92593 0.93321 1.25726 1.00470 0.98022 0.96940 1.70136 1.46374 1.24059 1.17332 0.86735 0.79180 0.81579 0.79950 1.23569 1.22054 1.14502 1.21397 0.96307 0.93638 0.87845 1.21953 0.80575 1.01522 0.97963 0.92512 0.92816 0.92127 0.91083 0.92448 0.93781 0.92737 0.90717 0.91268 0.92482 0.92203 0.93541 0.87556 0.87019 0.91416 0.86469 0.94153 0.91899 0.92828 0.95293 0.91096 0.89345 0.91988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.19 71.98 0.66 -1.15 16 2 C -0.10 -1.51 2.72 -10.79 -0.03 -1.54 16 3 C -0.15 -2.46 8.73 71.98 0.63 -1.83 16 4 C -0.10 -1.47 4.21 30.59 0.13 -1.34 16 5 C -0.07 -1.41 1.84 -10.79 -0.02 -1.43 16 6 H 0.06 1.45 6.35 -2.39 -0.02 1.44 16 7 C -0.15 -3.09 8.97 71.98 0.65 -2.45 16 8 C -0.13 -2.76 3.34 29.85 0.10 -2.66 16 9 C 0.51 14.97 7.39 87.65 0.65 15.62 16 10 O -0.58 -20.49 13.38 -3.04 -0.04 -20.53 16 11 N -0.61 -19.06 2.95 -817.93 -2.41 -21.47 16 12 C 0.10 2.88 6.50 86.42 0.56 3.44 16 13 C 0.12 4.74 4.45 86.42 0.38 5.12 16 14 N -0.61 -27.58 2.71 -698.13 -1.89 -29.48 16 15 C -0.26 -14.39 9.89 84.03 0.83 -13.56 16 16 H 0.05 2.92 8.06 -2.91 -0.02 2.90 16 17 C -0.01 -0.80 4.92 84.86 0.42 -0.38 16 18 N -0.94 -56.40 13.97 21.65 0.30 -56.09 16 19 Si 0.90 42.16 26.37 68.60 1.81 43.97 16 20 H -0.31 -15.08 7.11 99.48 0.71 -14.38 16 21 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 22 H -0.22 -9.23 4.49 99.48 0.45 -8.78 16 23 C 0.13 5.16 6.67 86.43 0.58 5.74 16 24 C 0.10 3.54 6.60 86.43 0.57 4.11 16 25 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 26 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 28 H 0.07 1.08 6.24 -2.39 -0.01 1.07 16 29 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.04 0.85 6.79 -2.39 -0.02 0.83 16 31 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 36 H 0.05 1.25 5.89 -2.39 -0.01 1.24 16 37 H 0.11 1.97 5.77 -2.39 -0.01 1.95 16 38 H 0.11 1.86 7.91 -2.39 -0.02 1.84 16 39 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 40 H 0.12 2.51 5.92 -2.39 -0.01 2.50 16 41 H 0.04 1.52 6.63 -2.38 -0.02 1.50 16 42 H 0.06 2.59 5.37 -2.39 -0.01 2.58 16 43 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 44 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.07 2.72 7.93 -2.39 -0.02 2.70 16 46 H 0.09 2.94 6.99 -2.39 -0.02 2.93 16 47 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -65.97 349.38 4.53 -61.43 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: 0.66 Total: 14.48 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: 6.10 Total: 7.68 kcal Atomic # 7 Polarization: -103.04 SS G_CDS: -4.00 Total: -107.04 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: -0.04 Total: -20.53 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 1.81 Total: 43.97 kcal Total: -65.97 4.53 -61.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073100550.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.187 kcal (2) G-P(sol) polarization free energy of solvation -65.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds