Wall clock time and date at job start Tue Mar 31 2020 05:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47063 * 2 1 4 4 C 1.53005 * 109.46794 * 240.00430 * 2 1 3 5 5 C 1.53007 * 109.46943 * 184.71614 * 4 2 1 6 6 H 1.09001 * 109.46776 * 304.74112 * 5 4 2 7 7 C 1.52997 * 109.47177 * 184.73584 * 5 4 2 8 8 C 1.53003 * 109.46983 * 64.73497 * 5 4 2 9 9 C 1.50701 * 109.46895 * 184.99976 * 8 5 4 10 10 O 1.21278 * 119.99915 * 359.97438 * 9 8 5 11 11 N 1.34774 * 119.99805 * 180.02562 * 9 8 5 12 12 C 1.46962 * 120.59629 * 359.71633 * 11 9 8 13 13 C 1.53814 * 108.39917 * 124.75875 * 12 11 9 14 14 N 1.46962 * 108.57635 * 49.64213 * 13 12 11 15 15 C 1.36943 * 120.59650 * 124.62706 * 14 13 12 16 16 H 1.07999 * 119.99617 * 209.02422 * 15 14 13 17 17 C 1.38810 * 119.99786 * 29.01694 * 15 14 13 18 18 N 1.31620 * 119.99943 * 15.96559 * 17 15 14 19 19 Si 1.86800 * 119.99800 * 195.96560 * 17 15 14 20 20 H 1.48497 * 109.47134 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46874 * 120.00069 * 19 17 15 22 22 H 1.48490 * 109.47019 * 240.00109 * 19 17 15 23 23 C 1.46975 * 118.81219 * 304.64354 * 14 13 12 24 24 C 1.46962 * 120.59404 * 180.02562 * 11 9 8 25 25 H 1.09001 * 109.46792 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46875 * 299.99346 * 1 2 3 27 27 H 1.08990 * 109.47242 * 59.99879 * 1 2 3 28 28 H 1.09002 * 109.47620 * 120.00185 * 2 1 3 29 29 H 1.08998 * 109.46969 * 60.08927 * 3 2 1 30 30 H 1.08997 * 109.46928 * 180.09627 * 3 2 1 31 31 H 1.09005 * 109.46992 * 300.09256 * 3 2 1 32 32 H 1.08996 * 109.47191 * 304.70965 * 4 2 1 33 33 H 1.08996 * 109.47156 * 64.71685 * 4 2 1 34 34 H 1.08994 * 109.47400 * 294.48162 * 7 5 4 35 35 H 1.09003 * 109.46950 * 54.48286 * 7 5 4 36 36 H 1.08997 * 109.47172 * 174.47944 * 7 5 4 37 37 H 1.08993 * 109.47708 * 305.00280 * 8 5 4 38 38 H 1.09007 * 109.46717 * 65.00281 * 8 5 4 39 39 H 1.09000 * 109.61519 * 244.54457 * 12 11 9 40 40 H 1.09007 * 109.60905 * 5.05947 * 12 11 9 41 41 H 1.08999 * 109.74024 * 289.85403 * 13 12 11 42 42 H 1.08997 * 109.53609 * 169.30498 * 13 12 11 43 43 H 0.96996 * 119.99882 * 180.02562 * 18 17 15 44 44 H 1.08996 * 109.60674 * 295.48414 * 23 14 13 45 45 H 1.09000 * 109.75151 * 175.05365 * 23 14 13 46 46 H 1.09000 * 109.61163 * 354.94281 * 24 11 9 47 47 H 1.09000 * 109.61556 * 115.28447 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.5654 -0.8247 -1.1915 6 1 3.9924 0.1699 -1.0634 7 6 4.0846 -1.4391 -2.4930 8 6 3.9721 -1.7101 -0.0117 9 6 5.4733 -1.7131 0.1199 10 8 6.1512 -1.0709 -0.6540 11 7 6.0626 -2.4304 1.0969 12 6 5.2536 -3.2092 2.0449 13 6 5.7369 -4.6691 2.0106 14 7 7.1997 -4.6814 2.1510 15 6 7.7985 -5.4095 3.1444 16 1 8.7453 -5.0887 3.5530 17 6 7.1884 -6.5595 3.6260 18 7 6.2185 -7.1265 2.9402 19 14 7.7438 -7.3024 5.2474 20 1 8.8414 -6.4810 5.8180 21 1 6.6018 -7.3296 6.1963 22 1 8.2292 -8.6867 5.0171 23 6 8.0086 -3.8980 1.2064 24 6 7.5254 -2.4423 1.2377 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 1.6780 1.9559 0.8908 30 1 3.1300 1.4425 -0.0017 31 1 1.6753 1.9569 -0.8892 32 1 1.6093 -1.7215 -1.2926 33 1 1.7472 -0.1608 -2.1372 34 1 3.7365 -2.4689 -2.5729 35 1 3.7127 -0.8631 -3.3403 36 1 5.1744 -1.4230 -2.4929 37 1 3.5278 -1.3213 0.9045 38 1 3.6202 -2.7275 -0.1828 39 1 5.3759 -2.8041 3.0494 40 1 4.2040 -3.1629 1.7544 41 1 5.4565 -5.1275 1.0623 42 1 5.2857 -5.2218 2.8346 43 1 5.7920 -7.9299 3.2769 44 1 7.8899 -4.3017 0.2009 45 1 9.0584 -3.9412 1.4965 46 1 7.9767 -1.8893 0.4139 47 1 7.8057 -1.9812 2.1847 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073100552.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:30 Heat of formation + Delta-G solvation = -37.519950 kcal Electronic energy + Delta-G solvation = -23465.188906 eV Core-core repulsion = 20261.727804 eV Total energy + Delta-G solvation = -3203.461102 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.84168 -37.71912 -36.60411 -33.85349 -33.49945 -31.44723 -30.18639 -28.22502 -27.31920 -26.58814 -26.44983 -23.61442 -22.80389 -21.21550 -20.52590 -19.41468 -18.42896 -17.21148 -16.11571 -15.84803 -15.18324 -14.93361 -14.77109 -14.46836 -14.13581 -13.70532 -13.61156 -13.39319 -13.24085 -12.92553 -12.80576 -12.44762 -12.36200 -12.02901 -11.82426 -11.69669 -11.46966 -11.33550 -11.29649 -11.01889 -10.86917 -10.73547 -10.54137 -10.48299 -10.32950 -10.29192 -10.22899 -10.00518 -9.84023 -9.19783 -8.61137 -8.19844 -6.71339 -5.87445 -3.33059 3.06345 3.31845 3.40188 3.42149 3.52099 4.42584 4.61531 4.71696 4.79017 4.95771 5.03839 5.23497 5.27628 5.32956 5.41694 5.47847 5.53913 5.57064 5.66926 5.74191 5.78193 5.81151 5.84188 5.88453 5.88915 5.95968 5.98111 6.05235 6.09380 6.13400 6.18124 6.22510 6.32692 6.37106 6.43989 6.51188 6.58398 6.78982 6.95048 7.22029 7.45518 7.70739 7.97980 8.34696 8.64519 9.10605 9.72704 10.30184 11.20158 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023472 B = 0.003890 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.631003 B = 7195.472122 C = 7782.835058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.102 4.102 3 C -0.150 4.150 4 C -0.110 4.110 5 C -0.075 4.075 6 H 0.078 0.922 7 C -0.152 4.152 8 C -0.137 4.137 9 C 0.510 3.490 10 O -0.559 6.559 11 N -0.599 5.599 12 C 0.079 3.921 13 C 0.158 3.842 14 N -0.592 5.592 15 C -0.255 4.255 16 H 0.068 0.932 17 C 0.003 3.997 18 N -0.903 5.903 19 Si 0.904 3.096 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.290 1.290 23 C 0.132 3.868 24 C 0.095 3.905 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.073 0.927 29 H 0.050 0.950 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.075 0.925 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.062 0.938 40 H 0.072 0.928 41 H 0.023 0.977 42 H 0.100 0.900 43 H 0.255 0.745 44 H 0.023 0.977 45 H 0.065 0.935 46 H 0.081 0.919 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.701 12.557 -5.364 16.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.121 4.121 3 C -0.207 4.207 4 C -0.148 4.148 5 C -0.094 4.094 6 H 0.097 0.903 7 C -0.209 4.209 8 C -0.176 4.176 9 C 0.298 3.702 10 O -0.439 6.439 11 N -0.331 5.331 12 C -0.045 4.045 13 C 0.031 3.969 14 N -0.314 5.314 15 C -0.384 4.384 16 H 0.085 0.915 17 C -0.195 4.195 18 N -0.547 5.547 19 Si 0.734 3.266 20 H -0.202 1.202 21 H -0.215 1.215 22 H -0.216 1.216 23 C 0.005 3.995 24 C -0.029 4.029 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.091 0.909 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.094 0.906 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.081 0.919 40 H 0.090 0.910 41 H 0.041 0.959 42 H 0.118 0.882 43 H 0.065 0.935 44 H 0.041 0.959 45 H 0.084 0.916 46 H 0.099 0.901 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.411 12.713 -5.707 16.815 hybrid contribution 0.146 -0.635 0.960 1.160 sum -9.265 12.078 -4.747 15.945 Atomic orbital electron populations 1.21839 0.95488 1.01631 1.01449 1.21207 0.95419 0.96502 0.98926 1.21898 1.01534 0.95932 1.01317 1.21733 0.95065 1.00448 0.97534 1.20931 0.94520 0.99637 0.94281 0.90326 1.21937 1.03288 0.99717 0.95969 1.21823 0.92980 1.02313 1.00525 1.20640 0.90527 0.78762 0.80255 1.90585 1.65930 1.44307 1.43038 1.48104 1.07678 1.46782 1.30524 1.22767 0.93867 0.95919 0.91942 1.21257 0.84655 0.89535 1.01410 1.43986 1.00760 1.54177 1.32525 1.19258 1.05968 1.02591 1.10587 0.91472 1.25091 0.99361 0.95710 0.99357 1.70009 1.27420 1.20312 1.36999 0.86195 0.78079 0.78820 0.83515 1.20193 1.21475 1.21648 1.21297 0.95447 0.89300 0.93441 1.22175 0.79757 0.99735 1.01217 0.92708 0.92922 0.92929 0.90916 0.93054 0.92196 0.92910 0.91881 0.91870 0.93424 0.93386 0.90567 0.89207 0.89073 0.91928 0.91009 0.95867 0.88223 0.93539 0.95936 0.91643 0.90096 0.92185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.19 37.16 0.34 -0.84 16 2 C -0.10 -0.93 2.78 -90.62 -0.25 -1.18 16 3 C -0.15 -1.36 8.95 37.16 0.33 -1.02 16 4 C -0.11 -1.07 4.16 -26.72 -0.11 -1.19 16 5 C -0.07 -0.90 1.90 -90.62 -0.17 -1.07 16 6 H 0.08 1.03 6.16 -51.93 -0.32 0.71 16 7 C -0.15 -1.96 8.87 37.16 0.33 -1.63 16 8 C -0.14 -1.80 3.38 -27.88 -0.09 -1.90 16 9 C 0.51 8.72 7.44 -10.99 -0.08 8.64 16 10 O -0.56 -10.85 13.38 5.56 0.07 -10.78 16 11 N -0.60 -10.85 2.94 -172.19 -0.51 -11.36 16 12 C 0.08 1.41 6.53 -3.37 -0.02 1.39 16 13 C 0.16 3.56 5.52 -3.37 -0.02 3.55 16 14 N -0.59 -14.44 2.96 -171.73 -0.51 -14.95 16 15 C -0.25 -6.77 9.58 -15.06 -0.14 -6.91 16 16 H 0.07 1.76 7.88 -52.49 -0.41 1.35 16 17 C 0.00 0.09 4.94 -17.43 -0.09 0.01 16 18 N -0.90 -25.26 11.16 55.49 0.62 -24.64 16 19 Si 0.90 21.00 29.58 -169.99 -5.03 15.97 16 20 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 C 0.13 2.80 6.67 -3.57 -0.02 2.77 16 24 C 0.10 1.78 6.59 -3.58 -0.02 1.76 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.70 6.25 -51.93 -0.32 0.37 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.60 6.45 -51.93 -0.34 0.27 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.08 1.19 6.07 -51.93 -0.32 0.87 16 37 H 0.09 1.05 6.00 -51.93 -0.31 0.74 16 38 H 0.09 1.17 7.73 -51.93 -0.40 0.77 16 39 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.07 1.06 5.91 -51.92 -0.31 0.75 16 41 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.10 2.48 6.00 -51.93 -0.31 2.16 16 43 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 44 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.07 1.32 7.94 -51.93 -0.41 0.91 16 46 H 0.08 1.48 6.99 -51.93 -0.36 1.12 16 47 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 355.39 15.07 5.36 5.36 Total: -1.00 -29.40 355.39 -8.47 -37.87 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -8.45 Total: 0.15 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: -0.03 Total: 2.37 kcal Atomic # 7 Polarization: -50.55 SS G_CDS: -0.40 Total: -50.95 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.07 Total: -10.78 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.03 Total: 15.97 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.40 -8.47 -37.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073100552.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.351 kcal (2) G-P(sol) polarization free energy of solvation -29.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds