Wall clock time and date at job start Tue Mar 31 2020 05:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47063 * 2 1 4 4 C 1.53005 * 109.46794 * 240.00430 * 2 1 3 5 5 C 1.53007 * 109.46943 * 184.71614 * 4 2 1 6 6 H 1.09001 * 109.46776 * 304.74112 * 5 4 2 7 7 C 1.52997 * 109.47177 * 184.73584 * 5 4 2 8 8 C 1.53003 * 109.46983 * 64.73497 * 5 4 2 9 9 C 1.50701 * 109.46895 * 184.99976 * 8 5 4 10 10 O 1.21278 * 119.99915 * 359.97438 * 9 8 5 11 11 N 1.34774 * 119.99805 * 180.02562 * 9 8 5 12 12 C 1.46962 * 120.59629 * 359.71633 * 11 9 8 13 13 C 1.53814 * 108.39917 * 124.75875 * 12 11 9 14 14 N 1.46962 * 108.57635 * 49.64213 * 13 12 11 15 15 C 1.36943 * 120.59650 * 124.62706 * 14 13 12 16 16 H 1.07999 * 119.99617 * 209.02422 * 15 14 13 17 17 C 1.38810 * 119.99786 * 29.01694 * 15 14 13 18 18 N 1.31620 * 119.99943 * 15.96559 * 17 15 14 19 19 Si 1.86800 * 119.99800 * 195.96560 * 17 15 14 20 20 H 1.48497 * 109.47134 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46874 * 120.00069 * 19 17 15 22 22 H 1.48490 * 109.47019 * 240.00109 * 19 17 15 23 23 C 1.46975 * 118.81219 * 304.64354 * 14 13 12 24 24 C 1.46962 * 120.59404 * 180.02562 * 11 9 8 25 25 H 1.09001 * 109.46792 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46875 * 299.99346 * 1 2 3 27 27 H 1.08990 * 109.47242 * 59.99879 * 1 2 3 28 28 H 1.09002 * 109.47620 * 120.00185 * 2 1 3 29 29 H 1.08998 * 109.46969 * 60.08927 * 3 2 1 30 30 H 1.08997 * 109.46928 * 180.09627 * 3 2 1 31 31 H 1.09005 * 109.46992 * 300.09256 * 3 2 1 32 32 H 1.08996 * 109.47191 * 304.70965 * 4 2 1 33 33 H 1.08996 * 109.47156 * 64.71685 * 4 2 1 34 34 H 1.08994 * 109.47400 * 294.48162 * 7 5 4 35 35 H 1.09003 * 109.46950 * 54.48286 * 7 5 4 36 36 H 1.08997 * 109.47172 * 174.47944 * 7 5 4 37 37 H 1.08993 * 109.47708 * 305.00280 * 8 5 4 38 38 H 1.09007 * 109.46717 * 65.00281 * 8 5 4 39 39 H 1.09000 * 109.61519 * 244.54457 * 12 11 9 40 40 H 1.09007 * 109.60905 * 5.05947 * 12 11 9 41 41 H 1.08999 * 109.74024 * 289.85403 * 13 12 11 42 42 H 1.08997 * 109.53609 * 169.30498 * 13 12 11 43 43 H 0.96996 * 119.99882 * 180.02562 * 18 17 15 44 44 H 1.08996 * 109.60674 * 295.48414 * 23 14 13 45 45 H 1.09000 * 109.75151 * 175.05365 * 23 14 13 46 46 H 1.09000 * 109.61163 * 354.94281 * 24 11 9 47 47 H 1.09000 * 109.61556 * 115.28447 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.5654 -0.8247 -1.1915 6 1 3.9924 0.1699 -1.0634 7 6 4.0846 -1.4391 -2.4930 8 6 3.9721 -1.7101 -0.0117 9 6 5.4733 -1.7131 0.1199 10 8 6.1512 -1.0709 -0.6540 11 7 6.0626 -2.4304 1.0969 12 6 5.2536 -3.2092 2.0449 13 6 5.7369 -4.6691 2.0106 14 7 7.1997 -4.6814 2.1510 15 6 7.7985 -5.4095 3.1444 16 1 8.7453 -5.0887 3.5530 17 6 7.1884 -6.5595 3.6260 18 7 6.2185 -7.1265 2.9402 19 14 7.7438 -7.3024 5.2474 20 1 8.8414 -6.4810 5.8180 21 1 6.6018 -7.3296 6.1963 22 1 8.2292 -8.6867 5.0171 23 6 8.0086 -3.8980 1.2064 24 6 7.5254 -2.4423 1.2377 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 1.6780 1.9559 0.8908 30 1 3.1300 1.4425 -0.0017 31 1 1.6753 1.9569 -0.8892 32 1 1.6093 -1.7215 -1.2926 33 1 1.7472 -0.1608 -2.1372 34 1 3.7365 -2.4689 -2.5729 35 1 3.7127 -0.8631 -3.3403 36 1 5.1744 -1.4230 -2.4929 37 1 3.5278 -1.3213 0.9045 38 1 3.6202 -2.7275 -0.1828 39 1 5.3759 -2.8041 3.0494 40 1 4.2040 -3.1629 1.7544 41 1 5.4565 -5.1275 1.0623 42 1 5.2857 -5.2218 2.8346 43 1 5.7920 -7.9299 3.2769 44 1 7.8899 -4.3017 0.2009 45 1 9.0584 -3.9412 1.4965 46 1 7.9767 -1.8893 0.4139 47 1 7.8057 -1.9812 2.1847 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073100552.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:30 Heat of formation + Delta-G solvation = -52.668234 kcal Electronic energy + Delta-G solvation = -23465.845785 eV Core-core repulsion = 20261.727804 eV Total energy + Delta-G solvation = -3204.117981 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.20597 -38.89905 -37.96740 -35.58716 -34.43022 -33.24757 -31.87307 -29.57677 -28.12458 -27.94346 -27.39781 -25.39226 -24.41728 -22.52527 -21.66306 -20.52286 -19.81074 -18.78054 -17.74940 -17.17053 -16.65071 -16.44905 -15.92876 -15.55614 -15.46973 -15.26750 -14.99755 -14.88372 -14.69094 -14.13363 -13.81666 -13.66690 -13.34410 -13.20177 -13.07452 -12.95856 -12.71328 -12.68321 -12.46854 -12.33577 -12.20612 -12.18515 -12.02975 -11.97308 -11.75822 -11.64700 -11.33801 -11.18772 -11.13793 -10.66295 -10.51160 -9.77420 -8.64543 -7.88914 -5.38641 1.47684 1.50564 1.60553 1.70575 2.11623 2.51284 3.25974 3.59263 3.60664 3.81685 3.90150 4.12366 4.17158 4.24285 4.28531 4.34972 4.39374 4.50981 4.58111 4.66318 4.69754 4.72162 4.74052 4.79717 4.82459 4.85407 4.91836 5.00956 5.04836 5.08044 5.13887 5.18820 5.21039 5.25572 5.32024 5.44578 5.53012 5.55010 5.59652 5.62003 5.63479 5.69176 6.35847 6.56495 7.10962 7.25860 7.77899 8.31840 9.16099 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023472 B = 0.003890 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.631003 B = 7195.472122 C = 7782.835058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.102 4.102 3 C -0.149 4.149 4 C -0.103 4.103 5 C -0.070 4.070 6 H 0.067 0.933 7 C -0.150 4.150 8 C -0.132 4.132 9 C 0.506 3.494 10 O -0.582 6.582 11 N -0.606 5.606 12 C 0.096 3.904 13 C 0.163 3.837 14 N -0.609 5.609 15 C -0.267 4.267 16 H 0.067 0.933 17 C -0.044 4.044 18 N -0.933 5.933 19 Si 0.969 3.031 20 H -0.268 1.268 21 H -0.286 1.286 22 H -0.294 1.294 23 C 0.133 3.867 24 C 0.105 3.895 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.056 0.944 30 H 0.046 0.954 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.050 0.950 35 H 0.062 0.938 36 H 0.044 0.956 37 H 0.111 0.889 38 H 0.099 0.901 39 H 0.068 0.932 40 H 0.107 0.893 41 H -0.001 1.001 42 H 0.075 0.925 43 H 0.252 0.748 44 H 0.007 0.993 45 H 0.070 0.930 46 H 0.084 0.916 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.030 13.641 -4.822 18.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.120 4.120 3 C -0.206 4.206 4 C -0.140 4.140 5 C -0.089 4.089 6 H 0.086 0.914 7 C -0.207 4.207 8 C -0.171 4.171 9 C 0.297 3.703 10 O -0.464 6.464 11 N -0.338 5.338 12 C -0.028 4.028 13 C 0.037 3.963 14 N -0.333 5.333 15 C -0.397 4.397 16 H 0.085 0.915 17 C -0.240 4.240 18 N -0.578 5.578 19 Si 0.797 3.203 20 H -0.193 1.193 21 H -0.212 1.212 22 H -0.222 1.222 23 C 0.007 3.993 24 C -0.019 4.019 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.089 0.911 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.063 0.937 37 H 0.129 0.871 38 H 0.118 0.882 39 H 0.087 0.913 40 H 0.125 0.875 41 H 0.017 0.983 42 H 0.093 0.907 43 H 0.061 0.939 44 H 0.025 0.975 45 H 0.089 0.911 46 H 0.102 0.898 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.741 13.825 -5.175 18.256 hybrid contribution 0.608 -0.962 0.703 1.337 sum -10.133 12.864 -4.472 16.975 Atomic orbital electron populations 1.21814 0.94502 1.01963 1.01923 1.21209 0.96222 0.96257 0.98360 1.21890 1.00655 0.96190 1.01887 1.21671 0.92954 1.01095 0.98310 1.20892 0.96194 0.98567 0.93215 0.91426 1.21898 1.01220 1.00356 0.97267 1.21894 0.89828 1.03240 1.02124 1.21347 0.92128 0.77749 0.79104 1.90583 1.66957 1.45217 1.43622 1.48202 1.07385 1.47194 1.31065 1.22552 0.95419 0.92364 0.92461 1.21107 0.83855 0.92333 0.99029 1.44257 1.01792 1.54394 1.32843 1.19551 1.06127 1.02884 1.11093 0.91488 1.25801 0.99720 0.96209 1.02236 1.70152 1.28596 1.20675 1.38405 0.85192 0.77780 0.77552 0.79784 1.19260 1.21229 1.22167 1.21344 0.95638 0.90449 0.91910 1.21961 0.80600 0.97632 1.01708 0.92455 0.92501 0.92475 0.91132 0.92481 0.93500 0.92423 0.91259 0.91114 0.93125 0.91898 0.93670 0.87085 0.88234 0.91347 0.87480 0.98284 0.90651 0.93853 0.97537 0.91141 0.89803 0.91427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.19 71.98 0.66 -1.26 16 2 C -0.10 -1.59 2.78 -10.79 -0.03 -1.62 16 3 C -0.15 -2.38 8.95 71.98 0.64 -1.74 16 4 C -0.10 -1.73 4.16 30.60 0.13 -1.60 16 5 C -0.07 -1.56 1.90 -10.79 -0.02 -1.58 16 6 H 0.07 1.69 6.16 -2.39 -0.01 1.67 16 7 C -0.15 -3.70 8.87 71.98 0.64 -3.06 16 8 C -0.13 -3.18 3.38 29.85 0.10 -3.07 16 9 C 0.51 16.70 7.44 87.66 0.65 17.36 16 10 O -0.58 -22.35 13.38 -3.02 -0.04 -22.39 16 11 N -0.61 -21.26 2.94 -817.07 -2.40 -23.67 16 12 C 0.10 3.27 6.53 86.57 0.57 3.83 16 13 C 0.16 7.39 5.52 86.57 0.48 7.87 16 14 N -0.61 -29.96 2.96 -697.24 -2.07 -32.03 16 15 C -0.27 -14.23 9.58 84.03 0.81 -13.43 16 16 H 0.07 3.50 7.88 -2.91 -0.02 3.48 16 17 C -0.04 -2.36 4.94 84.86 0.42 -1.94 16 18 N -0.93 -52.91 11.16 21.65 0.24 -52.67 16 19 Si 0.97 43.24 29.58 68.60 2.03 45.27 16 20 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 21 H -0.29 -12.56 7.11 99.48 0.71 -11.86 16 22 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 23 C 0.13 5.67 6.67 86.43 0.58 6.24 16 24 C 0.11 3.87 6.59 86.43 0.57 4.44 16 25 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.07 1.13 6.25 -2.39 -0.01 1.12 16 29 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.05 0.87 6.45 -2.39 -0.02 0.85 16 31 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.06 1.32 8.14 -2.39 -0.02 1.31 16 36 H 0.04 1.40 6.07 -2.39 -0.01 1.38 16 37 H 0.11 2.25 6.00 -2.39 -0.01 2.23 16 38 H 0.10 2.30 7.73 -2.38 -0.02 2.28 16 39 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.11 2.88 5.91 -2.38 -0.01 2.86 16 41 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 42 H 0.08 3.79 6.00 -2.39 -0.01 3.78 16 43 H 0.25 13.80 8.31 -92.71 -0.77 13.03 16 44 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 45 H 0.07 2.86 7.94 -2.39 -0.02 2.85 16 46 H 0.08 3.04 6.99 -2.39 -0.02 3.02 16 47 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -63.28 355.39 4.87 -58.42 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: 0.92 Total: 16.62 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: 6.19 Total: 10.45 kcal Atomic # 7 Polarization: -104.13 SS G_CDS: -4.23 Total: -108.36 kcal Atomic # 8 Polarization: -22.35 SS G_CDS: -0.04 Total: -22.39 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -63.28 4.87 -58.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073100552.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.749 kcal (2) G-P(sol) polarization free energy of solvation -63.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds