Wall clock time and date at job start Tue Mar 31 2020 05:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47668 * 2 1 4 4 C 1.53007 * 109.46804 * 239.99511 * 2 1 3 5 5 H 1.08995 * 109.46477 * 60.00640 * 4 2 1 6 6 C 1.52994 * 109.46777 * 180.02562 * 4 2 1 7 7 N 1.46498 * 109.47358 * 300.00472 * 4 2 1 8 8 C 1.34771 * 119.99815 * 154.99909 * 7 4 2 9 9 O 1.21285 * 120.00407 * 359.97438 * 8 7 4 10 10 C 1.50703 * 119.99960 * 180.02562 * 8 7 4 11 11 N 1.46507 * 109.47120 * 180.02562 * 10 8 7 12 12 C 1.36931 * 119.99585 * 269.99907 * 11 10 8 13 13 H 1.08003 * 120.00275 * 188.74959 * 12 11 10 14 14 C 1.38818 * 120.00552 * 8.74250 * 12 11 10 15 15 N 1.31623 * 119.99489 * 27.08097 * 14 12 11 16 16 Si 1.86795 * 120.00176 * 207.07669 * 14 12 11 17 17 H 1.48504 * 109.47258 * 60.00374 * 16 14 12 18 18 H 1.48504 * 109.47179 * 179.97438 * 16 14 12 19 19 H 1.48492 * 109.47527 * 300.00251 * 16 14 12 20 20 C 1.46495 * 119.99968 * 89.99795 * 11 10 8 21 21 C 1.54268 * 110.03212 * 238.26235 * 20 11 10 22 22 C 1.54958 * 104.16163 * 217.13853 * 21 20 11 23 23 C 1.54897 * 102.77794 * 37.88761 * 22 21 20 24 24 C 1.53878 * 110.02996 * 121.04748 * 20 11 10 25 25 H 1.09007 * 109.46591 * 300.00387 * 1 2 3 26 26 H 1.08995 * 109.47081 * 59.99478 * 1 2 3 27 27 H 1.08993 * 109.47458 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46762 * 120.00713 * 2 1 3 29 29 H 1.09000 * 109.46781 * 59.99954 * 3 2 1 30 30 H 1.08991 * 109.47106 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.46912 * 300.00019 * 3 2 1 32 32 H 1.09004 * 109.47465 * 60.00945 * 6 4 2 33 33 H 1.09010 * 109.46936 * 180.02562 * 6 4 2 34 34 H 1.09001 * 109.47564 * 300.00079 * 6 4 2 35 35 H 0.97000 * 119.99899 * 335.00115 * 7 4 2 36 36 H 1.08996 * 109.46818 * 299.99894 * 10 8 7 37 37 H 1.08997 * 109.47092 * 60.00011 * 10 8 7 38 38 H 0.97001 * 119.99902 * 174.61553 * 15 14 12 39 39 H 1.09000 * 110.02199 * 359.65441 * 20 11 10 40 40 H 1.09003 * 110.48609 * 335.78561 * 21 20 11 41 41 H 1.08999 * 110.48406 * 98.42901 * 21 20 11 42 42 H 1.09005 * 110.72401 * 279.57849 * 22 21 20 43 43 H 1.08998 * 110.92569 * 156.29373 * 22 21 20 44 44 H 1.09003 * 110.48221 * 203.40745 * 23 22 21 45 45 H 1.08999 * 110.59332 * 80.81729 * 23 22 21 46 46 H 1.09005 * 110.02745 * 238.56374 * 24 20 11 47 47 H 1.08998 * 110.03145 * 359.97438 * 24 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2493 5 1 1.6766 -0.2075 -2.1392 6 6 3.5699 -0.7220 -1.2489 7 7 1.5515 -2.1026 -1.2492 8 6 1.4228 -2.7718 -2.4119 9 8 1.7108 -2.2305 -3.4584 10 6 0.9198 -4.1924 -2.4120 11 7 0.8711 -4.6932 -3.7880 12 6 -0.2652 -4.5329 -4.5350 13 1 -0.3546 -5.0221 -5.4938 14 6 -1.3023 -3.7418 -4.0602 15 7 -1.0490 -2.7556 -3.2261 16 14 -3.0574 -4.0768 -4.6049 17 1 -3.4452 -5.4538 -4.2063 18 1 -3.9710 -3.0997 -3.9600 19 1 -3.1516 -3.9438 -6.0808 20 6 2.0382 -5.3653 -4.3645 21 6 2.5011 -4.6233 -5.6353 22 6 2.9517 -5.7555 -6.5925 23 6 1.9097 -6.8688 -6.3207 24 6 1.6626 -6.7926 -4.7999 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5140 0.8900 29 1 1.6768 1.9562 0.8900 30 1 3.1301 1.4423 -0.0005 31 1 1.6768 1.9562 -0.8900 32 1 3.9329 -1.2361 -0.3590 33 1 3.9332 -1.2355 -2.1392 34 1 3.9337 0.3056 -1.2488 35 1 1.3208 -2.5354 -0.4124 36 1 1.5919 -4.8158 -1.8224 37 1 -0.0795 -4.2240 -1.9779 38 1 -1.7605 -2.1545 -2.9553 39 1 2.8478 -5.3982 -3.6355 40 1 1.6750 -4.0615 -6.0713 41 1 3.3359 -3.9606 -5.4072 42 1 3.9559 -6.0966 -6.3407 43 1 2.9055 -5.4285 -7.6312 44 1 2.3135 -7.8440 -6.5932 45 1 0.9874 -6.6725 -6.8674 46 1 2.2907 -7.5181 -4.2827 47 1 0.6122 -6.9853 -4.5818 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078003430.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:50 Heat of formation + Delta-G solvation = -31.089903 kcal Electronic energy + Delta-G solvation = -24172.967650 eV Core-core repulsion = 20969.785376 eV Total energy + Delta-G solvation = -3203.182274 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -38.70982 -37.63205 -36.15366 -33.91035 -32.20152 -30.84166 -29.52943 -27.80562 -27.45852 -26.57565 -25.94130 -23.26821 -22.17966 -19.92052 -19.68153 -19.19127 -19.00678 -16.48710 -15.63743 -15.53387 -15.34932 -14.66487 -14.13395 -14.03215 -13.85692 -13.38171 -13.17521 -13.03113 -12.55574 -12.50255 -12.27751 -12.09970 -11.93148 -11.72034 -11.23155 -11.15372 -10.88740 -10.80140 -10.67827 -10.64570 -10.51154 -10.39903 -10.28520 -10.23537 -10.10873 -9.99499 -9.92121 -9.65278 -9.51694 -8.57729 -8.11252 -7.85916 -6.76506 -5.72027 -2.94383 3.43711 3.49844 3.51637 4.27014 4.44233 4.63724 5.00831 5.18481 5.32700 5.32823 5.39267 5.47789 5.56772 5.72868 5.73857 5.77188 5.84629 5.88348 6.07096 6.12413 6.13940 6.14345 6.27718 6.29395 6.32087 6.32953 6.41182 6.45598 6.54954 6.57888 6.60311 6.62793 6.67441 6.75286 6.88806 6.92459 7.00572 7.16402 7.29909 7.41059 7.68305 7.91875 8.37662 8.83011 9.26210 9.86331 10.02374 10.38618 11.37424 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015544 B = 0.006224 C = 0.004790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.945839 B = 4497.626573 C = 5844.650046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.100 4.100 3 C -0.145 4.145 4 C 0.153 3.847 5 H 0.079 0.921 6 C -0.160 4.160 7 N -0.745 5.745 8 C 0.530 3.470 9 O -0.528 6.528 10 C 0.162 3.838 11 N -0.566 5.566 12 C -0.237 4.237 13 H 0.077 0.923 14 C -0.002 4.002 15 N -0.894 5.894 16 Si 0.896 3.104 17 H -0.287 1.287 18 H -0.294 1.294 19 H -0.287 1.287 20 C 0.175 3.825 21 C -0.126 4.126 22 C -0.126 4.126 23 C -0.118 4.118 24 C -0.135 4.135 25 H 0.043 0.957 26 H 0.054 0.946 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.051 0.949 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.047 0.953 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.382 0.618 36 H 0.033 0.967 37 H 0.098 0.902 38 H 0.252 0.748 39 H 0.048 0.952 40 H 0.080 0.920 41 H 0.047 0.953 42 H 0.053 0.947 43 H 0.052 0.948 44 H 0.048 0.952 45 H 0.061 0.939 46 H 0.045 0.955 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.809 0.310 6.364 9.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.119 4.119 3 C -0.203 4.203 4 C 0.047 3.953 5 H 0.097 0.903 6 C -0.219 4.219 7 N -0.400 5.400 8 C 0.316 3.684 9 O -0.402 6.402 10 C 0.031 3.969 11 N -0.284 5.284 12 C -0.366 4.366 13 H 0.095 0.905 14 C -0.199 4.199 15 N -0.540 5.540 16 Si 0.727 3.273 17 H -0.214 1.214 18 H -0.221 1.221 19 H -0.214 1.214 20 C 0.068 3.932 21 C -0.165 4.165 22 C -0.164 4.164 23 C -0.156 4.156 24 C -0.174 4.174 25 H 0.062 0.938 26 H 0.074 0.926 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.214 0.786 36 H 0.051 0.949 37 H 0.116 0.884 38 H 0.062 0.938 39 H 0.066 0.934 40 H 0.099 0.901 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.067 0.933 45 H 0.079 0.921 46 H 0.064 0.936 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.858 0.749 5.659 8.923 hybrid contribution -1.153 0.063 0.069 1.156 sum 5.705 0.812 5.727 8.125 Atomic orbital electron populations 1.21754 0.94605 1.02610 1.00860 1.21355 0.96474 0.96061 0.98038 1.21852 1.00914 0.95944 1.01564 1.20644 0.92381 0.84539 0.97699 0.90267 1.22229 0.97074 1.00971 1.01602 1.46271 1.70855 1.13250 1.09610 1.21967 0.74064 0.90110 0.82238 1.90494 1.48964 1.69343 1.31351 1.20689 1.00463 0.88820 0.86924 1.44114 1.10880 1.63683 1.09710 1.19006 0.90013 1.25288 1.02337 0.90508 1.24673 0.98265 0.96718 1.00261 1.69854 1.30897 1.14659 1.38546 0.86416 0.85566 0.77429 0.77843 1.21437 1.22072 1.21386 1.20932 0.88426 0.90543 0.93341 1.22775 1.00656 0.96651 0.96442 1.22485 0.97836 0.97079 0.99027 1.22259 0.98783 0.97254 0.97272 1.22623 1.02181 0.98053 0.94578 0.93761 0.92650 0.91825 0.91616 0.93011 0.92511 0.92613 0.93386 0.92450 0.92658 0.78616 0.94926 0.88420 0.93760 0.93389 0.90147 0.93377 0.92837 0.92913 0.93330 0.92061 0.93623 0.90516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.04 37.16 0.34 -1.70 16 2 C -0.10 -1.34 2.55 -90.62 -0.23 -1.57 16 3 C -0.14 -1.69 8.84 37.16 0.33 -1.36 16 4 C 0.15 2.56 2.16 -67.93 -0.15 2.42 16 5 H 0.08 1.63 7.58 -51.93 -0.39 1.24 16 6 C -0.16 -2.40 9.13 37.15 0.34 -2.06 16 7 N -0.75 -13.67 4.38 -53.81 -0.24 -13.90 16 8 C 0.53 12.12 5.85 -10.99 -0.06 12.05 16 9 O -0.53 -14.34 15.75 5.55 0.09 -14.25 16 10 C 0.16 3.65 5.41 -5.19 -0.03 3.62 16 11 N -0.57 -13.57 1.96 -165.75 -0.33 -13.89 16 12 C -0.24 -6.27 7.63 -15.06 -0.11 -6.39 16 13 H 0.08 2.05 7.72 -52.48 -0.41 1.64 16 14 C 0.00 -0.05 4.83 -17.43 -0.08 -0.13 16 15 N -0.89 -24.61 9.05 55.49 0.50 -24.11 16 16 Si 0.90 21.72 29.64 -169.99 -5.04 16.68 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 20 C 0.18 3.66 3.42 -66.81 -0.23 3.43 16 21 C -0.13 -2.62 6.42 -25.03 -0.16 -2.78 16 22 C -0.13 -2.13 6.91 -24.70 -0.17 -2.30 16 23 C -0.12 -1.97 6.83 -25.07 -0.17 -2.14 16 24 C -0.13 -2.47 6.15 -25.61 -0.16 -2.63 16 25 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.06 1.01 7.45 -51.93 -0.39 0.62 16 28 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.61 6.43 -51.93 -0.33 0.27 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 1.00 8.14 -51.92 -0.42 0.58 16 34 H 0.05 0.72 6.43 -51.93 -0.33 0.39 16 35 H 0.38 6.07 8.39 -40.82 -0.34 5.72 16 36 H 0.03 0.64 7.93 -51.93 -0.41 0.23 16 37 H 0.10 2.37 6.39 -51.93 -0.33 2.03 16 38 H 0.25 6.96 8.32 -40.82 -0.34 6.62 16 39 H 0.05 0.96 7.83 -51.93 -0.41 0.56 16 40 H 0.08 1.96 7.02 -51.93 -0.36 1.60 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 46 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.08 1.54 7.32 -51.93 -0.38 1.16 16 LS Contribution 361.92 15.07 5.45 5.45 Total: -1.00 -29.86 361.92 -8.83 -38.69 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -8.72 Total: 6.85 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: -0.55 Total: -1.53 kcal Atomic # 7 Polarization: -51.85 SS G_CDS: -0.06 Total: -51.90 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: 0.09 Total: -14.25 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.04 Total: 16.68 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.86 -8.83 -38.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078003430.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.601 kcal (2) G-P(sol) polarization free energy of solvation -29.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds