Wall clock time and date at job start Tue Mar 31 2020 05:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47668 * 2 1 4 4 C 1.53007 * 109.46804 * 239.99511 * 2 1 3 5 5 H 1.08995 * 109.46477 * 60.00640 * 4 2 1 6 6 C 1.52994 * 109.46777 * 180.02562 * 4 2 1 7 7 N 1.46498 * 109.47358 * 300.00472 * 4 2 1 8 8 C 1.34771 * 119.99815 * 154.99909 * 7 4 2 9 9 O 1.21285 * 120.00407 * 359.97438 * 8 7 4 10 10 C 1.50703 * 119.99960 * 180.02562 * 8 7 4 11 11 N 1.46507 * 109.47120 * 180.02562 * 10 8 7 12 12 C 1.36931 * 119.99585 * 269.99907 * 11 10 8 13 13 H 1.08003 * 120.00275 * 188.74959 * 12 11 10 14 14 C 1.38818 * 120.00552 * 8.74250 * 12 11 10 15 15 N 1.31623 * 119.99489 * 27.08097 * 14 12 11 16 16 Si 1.86795 * 120.00176 * 207.07669 * 14 12 11 17 17 H 1.48504 * 109.47258 * 60.00374 * 16 14 12 18 18 H 1.48504 * 109.47179 * 179.97438 * 16 14 12 19 19 H 1.48492 * 109.47527 * 300.00251 * 16 14 12 20 20 C 1.46495 * 119.99968 * 89.99795 * 11 10 8 21 21 C 1.54268 * 110.03212 * 238.26235 * 20 11 10 22 22 C 1.54958 * 104.16163 * 217.13853 * 21 20 11 23 23 C 1.54897 * 102.77794 * 37.88761 * 22 21 20 24 24 C 1.53878 * 110.02996 * 121.04748 * 20 11 10 25 25 H 1.09007 * 109.46591 * 300.00387 * 1 2 3 26 26 H 1.08995 * 109.47081 * 59.99478 * 1 2 3 27 27 H 1.08993 * 109.47458 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46762 * 120.00713 * 2 1 3 29 29 H 1.09000 * 109.46781 * 59.99954 * 3 2 1 30 30 H 1.08991 * 109.47106 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.46912 * 300.00019 * 3 2 1 32 32 H 1.09004 * 109.47465 * 60.00945 * 6 4 2 33 33 H 1.09010 * 109.46936 * 180.02562 * 6 4 2 34 34 H 1.09001 * 109.47564 * 300.00079 * 6 4 2 35 35 H 0.97000 * 119.99899 * 335.00115 * 7 4 2 36 36 H 1.08996 * 109.46818 * 299.99894 * 10 8 7 37 37 H 1.08997 * 109.47092 * 60.00011 * 10 8 7 38 38 H 0.97001 * 119.99902 * 174.61553 * 15 14 12 39 39 H 1.09000 * 110.02199 * 359.65441 * 20 11 10 40 40 H 1.09003 * 110.48609 * 335.78561 * 21 20 11 41 41 H 1.08999 * 110.48406 * 98.42901 * 21 20 11 42 42 H 1.09005 * 110.72401 * 279.57849 * 22 21 20 43 43 H 1.08998 * 110.92569 * 156.29373 * 22 21 20 44 44 H 1.09003 * 110.48221 * 203.40745 * 23 22 21 45 45 H 1.08999 * 110.59332 * 80.81729 * 23 22 21 46 46 H 1.09005 * 110.02745 * 238.56374 * 24 20 11 47 47 H 1.08998 * 110.03145 * 359.97438 * 24 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2493 5 1 1.6766 -0.2075 -2.1392 6 6 3.5699 -0.7220 -1.2489 7 7 1.5515 -2.1026 -1.2492 8 6 1.4228 -2.7718 -2.4119 9 8 1.7108 -2.2305 -3.4584 10 6 0.9198 -4.1924 -2.4120 11 7 0.8711 -4.6932 -3.7880 12 6 -0.2652 -4.5329 -4.5350 13 1 -0.3546 -5.0221 -5.4938 14 6 -1.3023 -3.7418 -4.0602 15 7 -1.0490 -2.7556 -3.2261 16 14 -3.0574 -4.0768 -4.6049 17 1 -3.4452 -5.4538 -4.2063 18 1 -3.9710 -3.0997 -3.9600 19 1 -3.1516 -3.9438 -6.0808 20 6 2.0382 -5.3653 -4.3645 21 6 2.5011 -4.6233 -5.6353 22 6 2.9517 -5.7555 -6.5925 23 6 1.9097 -6.8688 -6.3207 24 6 1.6626 -6.7926 -4.7999 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5140 0.8900 29 1 1.6768 1.9562 0.8900 30 1 3.1301 1.4423 -0.0005 31 1 1.6768 1.9562 -0.8900 32 1 3.9329 -1.2361 -0.3590 33 1 3.9332 -1.2355 -2.1392 34 1 3.9337 0.3056 -1.2488 35 1 1.3208 -2.5354 -0.4124 36 1 1.5919 -4.8158 -1.8224 37 1 -0.0795 -4.2240 -1.9779 38 1 -1.7605 -2.1545 -2.9553 39 1 2.8478 -5.3982 -3.6355 40 1 1.6750 -4.0615 -6.0713 41 1 3.3359 -3.9606 -5.4072 42 1 3.9559 -6.0966 -6.3407 43 1 2.9055 -5.4285 -7.6312 44 1 2.3135 -7.8440 -6.5932 45 1 0.9874 -6.6725 -6.8674 46 1 2.2907 -7.5181 -4.2827 47 1 0.6122 -6.9853 -4.5818 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078003430.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:49 Heat of formation + Delta-G solvation = -47.971813 kcal Electronic energy + Delta-G solvation = -24173.699705 eV Core-core repulsion = 20969.785376 eV Total energy + Delta-G solvation = -3203.914329 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.37185 -39.18828 -37.65084 -35.72241 -33.73168 -32.77628 -30.90226 -29.32852 -28.99059 -28.02991 -27.52278 -24.82332 -23.77393 -21.38806 -21.04098 -20.81042 -20.71778 -18.30337 -17.37223 -17.22859 -16.88987 -16.28258 -15.88775 -15.41354 -15.29151 -14.97526 -14.66870 -14.53181 -14.08081 -14.03658 -13.93844 -13.46361 -13.17246 -13.03815 -12.93543 -12.73996 -12.55744 -12.44694 -12.30834 -12.14292 -11.90519 -11.84422 -11.79771 -11.73896 -11.66664 -11.58933 -11.34644 -11.31040 -11.22837 -10.50305 -10.07366 -9.48519 -8.67918 -7.77299 -4.99143 1.46993 1.49281 1.55031 2.53647 2.61096 2.89800 3.33413 3.65322 3.81611 3.98377 4.03077 4.06683 4.21062 4.30392 4.51649 4.54395 4.65436 4.66725 4.73337 4.77337 4.82752 4.84644 4.92712 4.93574 4.97823 5.00364 5.03097 5.05782 5.16775 5.19236 5.21544 5.25999 5.31938 5.32893 5.37344 5.50672 5.54913 5.58404 5.65490 5.71998 5.82212 6.15913 6.39150 7.14076 7.30586 7.96347 8.22487 8.39958 9.29098 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015544 B = 0.006224 C = 0.004790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.945839 B = 4497.626573 C = 5844.650046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.090 4.090 3 C -0.142 4.142 4 C 0.152 3.848 5 H 0.031 0.969 6 C -0.150 4.150 7 N -0.732 5.732 8 C 0.531 3.469 9 O -0.579 6.579 10 C 0.160 3.840 11 N -0.578 5.578 12 C -0.232 4.232 13 H 0.068 0.932 14 C -0.052 4.052 15 N -0.910 5.910 16 Si 0.952 3.048 17 H -0.279 1.279 18 H -0.302 1.302 19 H -0.292 1.292 20 C 0.166 3.834 21 C -0.123 4.123 22 C -0.114 4.114 23 C -0.113 4.113 24 C -0.127 4.127 25 H 0.071 0.929 26 H 0.027 0.973 27 H 0.044 0.956 28 H 0.092 0.908 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.040 0.960 32 H 0.072 0.928 33 H 0.024 0.976 34 H 0.077 0.923 35 H 0.397 0.603 36 H 0.065 0.935 37 H 0.079 0.921 38 H 0.241 0.759 39 H 0.057 0.943 40 H 0.034 0.966 41 H 0.034 0.966 42 H 0.080 0.920 43 H 0.061 0.939 44 H 0.083 0.917 45 H 0.045 0.955 46 H 0.074 0.926 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.235 -0.784 7.821 11.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.109 4.109 3 C -0.200 4.200 4 C 0.046 3.954 5 H 0.050 0.950 6 C -0.208 4.208 7 N -0.386 5.386 8 C 0.318 3.682 9 O -0.457 6.457 10 C 0.029 3.971 11 N -0.297 5.297 12 C -0.362 4.362 13 H 0.086 0.914 14 C -0.247 4.247 15 N -0.557 5.557 16 Si 0.783 3.217 17 H -0.206 1.206 18 H -0.228 1.228 19 H -0.219 1.219 20 C 0.059 3.941 21 C -0.162 4.162 22 C -0.152 4.152 23 C -0.151 4.151 24 C -0.166 4.166 25 H 0.090 0.910 26 H 0.046 0.954 27 H 0.063 0.937 28 H 0.110 0.890 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.059 0.941 32 H 0.091 0.909 33 H 0.044 0.956 34 H 0.095 0.905 35 H 0.231 0.769 36 H 0.083 0.917 37 H 0.097 0.903 38 H 0.050 0.950 39 H 0.076 0.924 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.098 0.902 43 H 0.080 0.920 44 H 0.102 0.898 45 H 0.064 0.936 46 H 0.093 0.907 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.299 -0.366 7.156 10.964 hybrid contribution -1.540 0.424 -0.371 1.640 sum 6.759 0.058 6.785 9.577 Atomic orbital electron populations 1.21719 0.95591 1.01368 1.00812 1.21318 0.95499 0.97231 0.96888 1.21838 1.01785 0.94354 1.01974 1.20739 0.93748 0.83214 0.97654 0.95023 1.22125 0.95235 1.02337 1.01146 1.46041 1.69613 1.13875 1.09062 1.21956 0.73382 0.90366 0.82528 1.90470 1.51442 1.70387 1.33384 1.20712 1.00158 0.89385 0.86804 1.44299 1.11371 1.63930 1.10085 1.19093 0.91043 1.24121 1.01973 0.91401 1.25245 1.00881 0.97092 1.01491 1.70021 1.30629 1.15185 1.39907 0.85553 0.82159 0.77164 0.76858 1.20600 1.22842 1.21913 1.21212 0.87802 0.91709 0.93404 1.22634 0.98545 0.97471 0.97583 1.22436 0.99130 0.95245 0.98411 1.22243 0.98232 0.98869 0.95761 1.22515 1.01368 0.96612 0.96115 0.91028 0.95409 0.93663 0.88961 0.90803 0.91096 0.94050 0.90917 0.95640 0.90453 0.76877 0.91737 0.90261 0.94952 0.92434 0.94710 0.94668 0.90175 0.92027 0.89850 0.93608 0.90695 0.92663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.90 9.04 71.98 0.65 -3.25 16 2 C -0.09 -2.27 2.55 -10.79 -0.03 -2.30 16 3 C -0.14 -2.97 8.84 71.98 0.64 -2.33 16 4 C 0.15 5.11 2.16 44.99 0.10 5.20 16 5 H 0.03 1.37 7.58 -2.39 -0.02 1.36 16 6 C -0.15 -4.34 9.13 71.98 0.66 -3.69 16 7 N -0.73 -27.09 4.38 -442.54 -1.94 -29.03 16 8 C 0.53 24.99 5.85 87.66 0.51 25.50 16 9 O -0.58 -33.01 15.75 -3.04 -0.05 -33.06 16 10 C 0.16 7.32 5.41 85.63 0.46 7.78 16 11 N -0.58 -28.27 1.96 -678.30 -1.33 -29.61 16 12 C -0.23 -12.63 7.63 84.04 0.64 -11.99 16 13 H 0.07 3.74 7.72 -2.91 -0.02 3.72 16 14 C -0.05 -2.90 4.83 84.86 0.41 -2.49 16 15 N -0.91 -52.14 9.05 21.65 0.20 -51.95 16 16 Si 0.95 46.06 29.64 68.60 2.03 48.10 16 17 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 18 H -0.30 -14.83 7.11 99.48 0.71 -14.13 16 19 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 20 C 0.17 6.86 3.42 45.72 0.16 7.01 16 21 C -0.12 -5.18 6.42 31.69 0.20 -4.98 16 22 C -0.11 -3.64 6.91 31.91 0.22 -3.41 16 23 C -0.11 -3.52 6.83 31.67 0.22 -3.31 16 24 C -0.13 -4.42 6.15 31.32 0.19 -4.23 16 25 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 26 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.04 1.43 7.45 -2.39 -0.02 1.41 16 28 H 0.09 1.91 8.14 -2.38 -0.02 1.89 16 29 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.07 1.29 6.43 -2.39 -0.02 1.28 16 31 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 33 H 0.02 0.88 8.14 -2.38 -0.02 0.86 16 34 H 0.08 1.88 6.43 -2.39 -0.02 1.87 16 35 H 0.40 12.32 8.39 -92.71 -0.78 11.54 16 36 H 0.06 2.48 7.93 -2.39 -0.02 2.47 16 37 H 0.08 3.93 6.39 -2.39 -0.02 3.92 16 38 H 0.24 13.91 8.32 -92.71 -0.77 13.13 16 39 H 0.06 2.24 7.83 -2.39 -0.02 2.22 16 40 H 0.03 1.76 7.02 -2.39 -0.02 1.74 16 41 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 43 H 0.06 1.85 8.14 -2.39 -0.02 1.84 16 44 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 45 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 46 H 0.07 2.17 8.14 -2.38 -0.02 2.16 16 47 H 0.05 2.17 7.32 -2.39 -0.02 2.15 16 Total: -1.00 -68.92 361.92 4.08 -64.84 By element: Atomic # 1 Polarization: 27.05 SS G_CDS: 0.14 Total: 27.20 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: 5.03 Total: 3.51 kcal Atomic # 7 Polarization: -107.51 SS G_CDS: -3.07 Total: -110.59 kcal Atomic # 8 Polarization: -33.01 SS G_CDS: -0.05 Total: -33.06 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.10 kcal Total: -68.92 4.08 -64.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078003430.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.864 kcal (2) G-P(sol) polarization free energy of solvation -68.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds