Wall clock time and date at job start Tue Mar 31 2020 05:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47244 * 2 1 4 4 C 1.53005 * 109.47059 * 119.99621 * 2 1 3 5 5 H 1.09005 * 109.46967 * 60.00119 * 4 2 1 6 6 C 1.52992 * 109.47065 * 300.00042 * 4 2 1 7 7 N 1.46496 * 109.47145 * 179.97438 * 4 2 1 8 8 C 1.34778 * 120.00183 * 204.99536 * 7 4 2 9 9 O 1.21282 * 119.99736 * 0.02562 * 8 7 4 10 10 C 1.50698 * 120.00027 * 179.97438 * 8 7 4 11 11 N 1.46503 * 109.46838 * 180.02562 * 10 8 7 12 12 C 1.36945 * 119.99777 * 269.99990 * 11 10 8 13 13 H 1.07996 * 119.99444 * 188.68788 * 12 11 10 14 14 C 1.38812 * 119.99705 * 8.68295 * 12 11 10 15 15 N 1.31621 * 120.00243 * 27.15849 * 14 12 11 16 16 Si 1.86805 * 119.99647 * 207.14738 * 14 12 11 17 17 H 1.48498 * 109.47049 * 60.00817 * 16 14 12 18 18 H 1.48506 * 109.46652 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47103 * 300.00285 * 16 14 12 20 20 C 1.46496 * 120.00270 * 90.00457 * 11 10 8 21 21 C 1.54262 * 110.03056 * 238.20105 * 20 11 10 22 22 C 1.54973 * 104.15881 * 217.13544 * 21 20 11 23 23 C 1.54890 * 102.77613 * 37.88750 * 22 21 20 24 24 C 1.53871 * 110.03416 * 120.98085 * 20 11 10 25 25 H 1.09000 * 109.47074 * 60.00379 * 1 2 3 26 26 H 1.08995 * 109.46971 * 300.00207 * 1 2 3 27 27 H 1.09005 * 109.47134 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47622 * 239.99268 * 2 1 3 29 29 H 1.09000 * 109.46775 * 299.99803 * 3 2 1 30 30 H 1.08999 * 109.46915 * 59.99685 * 3 2 1 31 31 H 1.08998 * 109.47240 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47260 * 179.97438 * 6 4 2 33 33 H 1.08999 * 109.47602 * 300.00191 * 6 4 2 34 34 H 1.09007 * 109.47170 * 60.00202 * 6 4 2 35 35 H 0.96999 * 120.00136 * 25.00441 * 7 4 2 36 36 H 1.09003 * 109.47478 * 300.00806 * 10 8 7 37 37 H 1.08996 * 109.47261 * 60.00947 * 10 8 7 38 38 H 0.96993 * 119.99800 * 174.70001 * 15 14 12 39 39 H 1.08999 * 110.01437 * 359.58786 * 20 11 10 40 40 H 1.09000 * 110.48832 * 335.77728 * 21 20 11 41 41 H 1.08998 * 110.49096 * 98.42891 * 21 20 11 42 42 H 1.09006 * 110.71677 * 279.57516 * 22 21 20 43 43 H 1.08996 * 110.92458 * 156.29429 * 22 21 20 44 44 H 1.09003 * 110.48158 * 203.40886 * 23 22 21 45 45 H 1.08994 * 110.59886 * 80.82177 * 23 22 21 46 46 H 1.09005 * 110.03374 * 238.56824 * 24 20 11 47 47 H 1.08996 * 110.03280 * 359.97438 * 24 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6766 -1.7489 1.2494 6 6 1.5300 0.0001 2.4985 7 7 3.5050 -0.7217 1.2490 8 6 4.1787 -1.6779 1.9187 9 8 3.5720 -2.5381 2.5211 10 6 5.6856 -1.6788 1.9179 11 7 6.1737 -2.8105 2.7100 12 6 6.4027 -2.6590 4.0516 13 1 6.8926 -3.4445 4.6077 14 6 6.0052 -1.4959 4.6965 15 7 4.9910 -0.7985 4.2303 16 14 6.9096 -0.9205 6.2264 17 1 8.3368 -0.6775 5.8957 18 1 6.2946 0.3374 6.7213 19 1 6.8160 -1.9642 7.2787 20 6 6.4168 -4.1040 2.0668 21 6 5.5637 -5.1981 2.7413 22 6 6.4806 -6.4475 2.7415 23 6 7.8783 -5.8465 3.0320 24 6 7.8878 -4.5161 2.2511 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.8929 -0.5139 3.3885 33 1 1.8933 1.0278 2.4984 34 1 0.4399 0.0001 2.4985 35 1 3.9901 -0.0339 0.7670 36 1 6.0484 -1.7689 0.8940 37 1 6.0497 -0.7475 2.3516 38 1 4.6642 -0.0293 4.7225 39 1 6.1760 -4.0441 1.0055 40 1 5.3115 -4.9102 3.7618 41 1 4.6596 -5.3877 2.1628 42 1 6.4655 -6.9371 1.7677 43 1 6.1889 -7.1443 3.5272 44 1 8.6622 -6.5095 2.6657 45 1 8.0027 -5.6634 4.0993 46 1 8.3607 -4.6571 1.2792 47 1 8.4210 -3.7534 2.8187 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078003432.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:53 Heat of formation + Delta-G solvation = -28.358019 kcal Electronic energy + Delta-G solvation = -24138.277684 eV Core-core repulsion = 20935.213873 eV Total energy + Delta-G solvation = -3203.063811 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -38.76613 -37.67126 -36.28529 -33.91409 -32.15687 -30.84439 -29.01395 -27.80172 -27.33556 -26.92208 -26.04598 -23.74550 -22.30687 -19.91970 -19.33747 -19.00961 -18.88161 -16.47696 -15.82341 -15.56469 -15.06486 -14.81692 -14.63480 -14.03113 -13.68485 -13.45769 -13.21598 -12.86611 -12.71964 -12.52618 -12.36793 -12.11196 -11.81703 -11.61413 -11.25945 -11.05674 -10.93847 -10.84254 -10.74619 -10.64333 -10.39922 -10.35984 -10.27783 -10.23235 -10.12137 -9.97041 -9.92237 -9.64990 -9.51310 -8.57010 -8.11884 -7.85411 -6.76359 -5.71729 -2.94125 3.43903 3.50085 3.51837 4.27776 4.43963 4.63541 5.01858 5.08142 5.23697 5.33022 5.37165 5.47922 5.56636 5.69320 5.71533 5.75294 5.79328 5.91474 5.98052 6.12163 6.14111 6.14912 6.24111 6.29619 6.32253 6.34490 6.40409 6.45146 6.46352 6.56092 6.58058 6.62975 6.68866 6.87837 6.92083 7.00490 7.03866 7.16269 7.30052 7.41219 7.69584 7.92141 8.37884 8.82782 9.26419 9.86328 10.02264 10.38779 11.37604 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015736 B = 0.005935 C = 0.004744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.919072 B = 4716.764763 C = 5901.150113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.103 4.103 3 C -0.147 4.147 4 C 0.156 3.844 5 H 0.072 0.928 6 C -0.158 4.158 7 N -0.747 5.747 8 C 0.529 3.471 9 O -0.529 6.529 10 C 0.162 3.838 11 N -0.566 5.566 12 C -0.238 4.238 13 H 0.077 0.923 14 C -0.001 4.001 15 N -0.893 5.893 16 Si 0.896 3.104 17 H -0.287 1.287 18 H -0.295 1.295 19 H -0.287 1.287 20 C 0.176 3.824 21 C -0.126 4.126 22 C -0.126 4.126 23 C -0.118 4.118 24 C -0.135 4.135 25 H 0.051 0.949 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.068 0.932 29 H 0.049 0.951 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.050 0.950 34 H 0.046 0.954 35 H 0.382 0.618 36 H 0.033 0.967 37 H 0.098 0.902 38 H 0.252 0.748 39 H 0.048 0.952 40 H 0.080 0.920 41 H 0.048 0.952 42 H 0.053 0.947 43 H 0.052 0.948 44 H 0.048 0.952 45 H 0.061 0.939 46 H 0.045 0.955 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.604 0.834 -9.440 9.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.205 4.205 4 C 0.050 3.950 5 H 0.090 0.910 6 C -0.216 4.216 7 N -0.403 5.403 8 C 0.315 3.685 9 O -0.402 6.402 10 C 0.031 3.969 11 N -0.284 5.284 12 C -0.367 4.367 13 H 0.095 0.905 14 C -0.199 4.199 15 N -0.539 5.539 16 Si 0.727 3.273 17 H -0.214 1.214 18 H -0.221 1.221 19 H -0.214 1.214 20 C 0.068 3.932 21 C -0.165 4.165 22 C -0.164 4.164 23 C -0.156 4.156 24 C -0.174 4.174 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.215 0.785 36 H 0.051 0.949 37 H 0.116 0.884 38 H 0.062 0.938 39 H 0.066 0.934 40 H 0.099 0.901 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.067 0.933 45 H 0.079 0.921 46 H 0.064 0.936 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.035 0.357 -8.918 9.427 hybrid contribution 0.338 0.799 0.840 1.208 sum -2.697 1.156 -8.078 8.594 Atomic orbital electron populations 1.21844 0.95095 1.01735 1.01601 1.21373 0.95845 0.96534 0.98482 1.21878 1.01064 0.96036 1.01492 1.20578 0.82421 0.98994 0.92999 0.90956 1.22197 0.99101 1.00629 0.99719 1.46361 1.05079 1.32408 1.56433 1.21989 0.91652 0.79316 0.75524 1.90493 1.69998 1.38811 1.40887 1.20689 0.89234 0.94328 0.92645 1.44118 1.73627 1.04927 1.05722 1.19004 1.31680 1.00749 0.85237 0.90505 1.24671 0.97560 0.99508 0.98156 1.69856 1.22801 1.21382 1.39823 0.86422 0.79953 0.77906 0.83005 1.21431 1.22091 1.21393 1.20929 0.92014 0.85881 0.94415 1.22777 0.97001 0.93768 1.02989 1.22486 0.96268 0.97877 0.99795 1.22257 0.96282 0.96697 1.00330 1.22622 0.99187 0.96936 0.98685 0.93012 0.92195 0.92744 0.91322 0.93226 0.92174 0.92600 0.91254 0.93060 0.93484 0.78495 0.94921 0.88412 0.93771 0.93387 0.90144 0.93365 0.92834 0.92914 0.93333 0.92063 0.93623 0.90520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 8.84 37.16 0.33 -1.29 16 2 C -0.10 -1.31 2.91 -90.62 -0.26 -1.58 16 3 C -0.15 -1.70 8.67 37.16 0.32 -1.37 16 4 C 0.16 2.62 2.40 -67.93 -0.16 2.46 16 5 H 0.07 1.39 7.58 -51.93 -0.39 1.00 16 6 C -0.16 -2.74 8.78 37.15 0.33 -2.41 16 7 N -0.75 -13.84 5.00 -53.81 -0.27 -14.11 16 8 C 0.53 12.17 5.85 -10.99 -0.06 12.10 16 9 O -0.53 -14.38 15.76 5.56 0.09 -14.30 16 10 C 0.16 3.67 5.41 -5.19 -0.03 3.64 16 11 N -0.57 -13.59 1.96 -165.76 -0.33 -13.91 16 12 C -0.24 -6.28 7.63 -15.06 -0.11 -6.40 16 13 H 0.08 2.05 7.73 -52.49 -0.41 1.64 16 14 C 0.00 -0.04 4.83 -17.43 -0.08 -0.12 16 15 N -0.89 -24.58 9.06 55.49 0.50 -24.08 16 16 Si 0.90 21.73 29.64 -169.99 -5.04 16.69 16 17 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 18 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 19 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 20 C 0.18 3.66 3.42 -66.82 -0.23 3.44 16 21 C -0.13 -2.62 6.42 -25.03 -0.16 -2.78 16 22 C -0.13 -2.13 6.91 -24.69 -0.17 -2.30 16 23 C -0.12 -1.97 6.83 -25.07 -0.17 -2.14 16 24 C -0.13 -2.47 6.15 -25.61 -0.16 -2.63 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.67 6.43 -51.93 -0.33 0.33 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.72 6.43 -51.93 -0.33 0.39 16 31 H 0.06 0.65 6.51 -51.93 -0.34 0.31 16 32 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 33 H 0.05 0.85 6.43 -51.93 -0.33 0.51 16 34 H 0.05 0.70 6.43 -51.92 -0.33 0.37 16 35 H 0.38 6.15 6.87 -40.82 -0.28 5.87 16 36 H 0.03 0.65 7.94 -51.93 -0.41 0.23 16 37 H 0.10 2.38 6.39 -51.93 -0.33 2.05 16 38 H 0.25 6.97 8.32 -40.82 -0.34 6.63 16 39 H 0.05 0.96 7.83 -51.93 -0.41 0.56 16 40 H 0.08 1.96 7.01 -51.93 -0.36 1.60 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 46 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.08 1.54 7.33 -51.93 -0.38 1.16 16 LS Contribution 356.54 15.07 5.37 5.37 Total: -1.00 -29.88 356.54 -8.73 -38.61 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -8.43 Total: 7.11 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: -0.63 Total: -1.38 kcal Atomic # 7 Polarization: -52.01 SS G_CDS: -0.09 Total: -52.10 kcal Atomic # 8 Polarization: -14.38 SS G_CDS: 0.09 Total: -14.30 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.04 Total: 16.69 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.88 -8.73 -38.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078003432.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.250 kcal (2) G-P(sol) polarization free energy of solvation -29.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds