Wall clock time and date at job start Tue Mar 31 2020 05:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46920 * 2 1 4 4 C 1.53003 * 109.47271 * 120.00069 * 2 1 3 5 5 N 1.46503 * 109.46693 * 177.48928 * 4 2 1 6 6 C 1.46765 * 124.35095 * 84.16890 * 5 4 2 7 7 C 1.54478 * 105.47417 * 197.03148 * 6 5 4 8 8 C 1.54790 * 101.69106 * 334.39212 * 7 6 5 9 9 C 1.34418 * 124.34655 * 264.18195 * 5 4 2 10 10 O 1.21278 * 124.94692 * 359.54830 * 9 5 4 11 11 N 1.46900 * 109.47227 * 240.00515 * 2 1 3 12 12 C 1.46892 * 111.00309 * 82.07780 * 11 2 1 13 13 C 1.53000 * 109.47216 * 180.02562 * 12 11 2 14 14 C 1.52993 * 109.46941 * 300.00105 * 13 12 11 15 15 C 1.52998 * 109.47088 * 60.00507 * 13 12 11 16 16 C 1.53005 * 109.46918 * 180.02562 * 13 12 11 17 17 C 1.50699 * 109.46674 * 179.97438 * 16 13 12 18 18 H 1.08002 * 120.00551 * 359.97438 * 17 16 13 19 19 C 1.37885 * 119.99913 * 179.97438 * 17 16 13 20 20 N 1.31520 * 119.99653 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 119.99961 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47517 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47053 * 120.00098 * 21 19 17 24 24 H 1.48501 * 109.47465 * 239.99840 * 21 19 17 25 25 H 1.09007 * 109.47063 * 299.99569 * 1 2 3 26 26 H 1.09000 * 109.47281 * 59.99557 * 1 2 3 27 27 H 1.09000 * 109.46920 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47097 * 57.48941 * 4 2 1 29 29 H 1.09004 * 109.47002 * 297.48492 * 4 2 1 30 30 H 1.09006 * 110.24265 * 316.03437 * 6 5 4 31 31 H 1.09000 * 110.24593 * 77.93953 * 6 5 4 32 32 H 1.09000 * 110.96812 * 92.69945 * 7 6 5 33 33 H 1.08994 * 110.97246 * 216.46481 * 7 6 5 34 34 H 1.08997 * 110.61258 * 266.39414 * 8 7 6 35 35 H 1.08999 * 110.42697 * 143.70636 * 8 7 6 36 36 H 1.00894 * 110.99707 * 206.03758 * 11 2 1 37 37 H 1.08999 * 109.47415 * 300.00713 * 12 11 2 38 38 H 1.09004 * 109.47119 * 60.00231 * 12 11 2 39 39 H 1.08999 * 109.47564 * 59.99893 * 14 13 12 40 40 H 1.09009 * 109.46964 * 180.02562 * 14 13 12 41 41 H 1.08999 * 109.47598 * 299.99580 * 14 13 12 42 42 H 1.08994 * 109.47330 * 60.00030 * 15 13 12 43 43 H 1.08995 * 109.47006 * 180.02562 * 15 13 12 44 44 H 1.09001 * 109.46954 * 299.99809 * 15 13 12 45 45 H 1.09001 * 109.47074 * 299.99578 * 16 13 12 46 46 H 1.08999 * 109.47479 * 60.00506 * 16 13 12 47 47 H 0.97002 * 119.99758 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5038 -0.7738 1.2192 6 6 4.3810 0.3082 1.6817 7 6 5.7666 0.0057 1.0693 8 6 5.6964 -1.5286 0.8771 9 6 4.2160 -1.8192 0.7644 10 8 3.7411 -2.8476 0.3313 11 7 2.0197 -0.6924 -1.1995 12 6 2.0170 0.2043 -2.3630 13 6 2.5316 -0.5509 -3.5901 14 6 3.9569 -1.0405 -3.3269 15 6 1.6234 -1.7503 -3.8686 16 6 2.5293 0.3834 -4.8018 17 6 3.0367 -0.3603 -6.0103 18 1 3.3317 -1.3956 -5.9228 19 6 3.1244 0.2809 -7.2278 20 7 2.7657 1.5418 -7.3342 21 14 3.7540 -0.6407 -8.7256 22 1 4.0900 -2.0357 -8.3434 23 1 2.7040 -0.6549 -9.7756 24 1 4.9681 0.0357 -9.2489 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.6405 -1.7351 1.2720 29 1 1.7140 -0.1820 2.1387 30 1 4.0130 1.2704 1.3254 31 1 4.4397 0.3070 2.7701 32 1 5.8910 0.5167 0.1146 33 1 6.5655 0.2737 1.7606 34 1 6.1216 -2.0431 1.7388 35 1 6.2133 -1.8216 -0.0366 36 1 2.9381 -1.0798 -1.0436 37 1 1.0015 0.5529 -2.5507 38 1 2.6636 1.0591 -2.1644 39 1 3.9590 -1.7059 -2.4635 40 1 4.3237 -1.5782 -4.2013 41 1 4.6039 -0.1861 -3.1285 42 1 0.6080 -1.4014 -4.0561 43 1 1.9903 -2.2885 -4.7425 44 1 1.6254 -2.4157 -3.0053 45 1 1.5140 0.7325 -4.9895 46 1 3.1766 1.2376 -4.6032 47 1 2.8277 1.9930 -8.1906 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078052355.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:45 Heat of formation + Delta-G solvation = -52.320127 kcal Electronic energy + Delta-G solvation = -23834.531829 eV Core-core repulsion = 20630.428943 eV Total energy + Delta-G solvation = -3204.102886 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.61671 -37.80848 -36.51321 -35.51884 -32.67491 -31.87971 -29.84037 -27.73977 -26.81747 -26.49012 -26.17136 -24.92768 -22.47907 -22.19035 -20.49699 -19.47711 -17.84747 -16.98168 -16.70794 -16.19005 -15.64865 -15.57666 -14.61339 -14.41791 -14.01556 -13.82734 -13.73473 -13.33539 -13.18063 -12.91826 -12.67769 -12.49547 -12.16574 -11.96092 -11.92751 -11.75034 -11.67351 -11.52210 -11.23913 -11.12211 -10.88407 -10.73120 -10.67185 -10.42984 -10.17282 -10.03730 -9.82200 -9.61091 -8.98867 -8.84192 -8.72063 -8.28032 -7.96691 -5.92591 -3.92037 2.52311 2.85574 3.35189 3.42907 3.47536 4.16271 4.24873 4.43815 4.54719 4.57602 4.82305 4.86901 5.16413 5.19396 5.19653 5.27813 5.43388 5.46253 5.49027 5.61089 5.69423 5.74659 5.76152 5.83268 5.85748 6.03215 6.07397 6.27028 6.32252 6.41313 6.46663 6.60980 6.77903 6.87289 6.91997 6.98665 7.27649 7.33635 7.35749 7.51976 7.74568 7.82220 7.91496 8.08370 8.11413 8.53813 9.13590 9.70569 11.19211 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020483 B = 0.004366 C = 0.004021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.671213 B = 6411.884128 C = 6961.977940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.064 3.936 3 H 0.038 0.962 4 C 0.123 3.877 5 N -0.624 5.624 6 C 0.101 3.899 7 C -0.134 4.134 8 C -0.158 4.158 9 C 0.511 3.489 10 O -0.515 6.515 11 N -0.678 5.678 12 C 0.072 3.928 13 C -0.057 4.057 14 C -0.127 4.127 15 C -0.116 4.116 16 C 0.034 3.966 17 C -0.504 4.504 18 H 0.060 0.940 19 C 0.054 3.946 20 N -0.899 5.899 21 Si 0.887 3.113 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.286 1.286 25 H 0.051 0.949 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.092 0.908 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.102 0.898 35 H 0.104 0.896 36 H 0.342 0.658 37 H 0.065 0.935 38 H 0.017 0.983 39 H 0.033 0.967 40 H 0.064 0.936 41 H 0.036 0.964 42 H 0.038 0.962 43 H 0.053 0.947 44 H 0.044 0.956 45 H 0.014 0.986 46 H 0.011 0.989 47 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.934 -0.771 21.588 21.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.047 4.047 3 H 0.056 0.944 4 C 0.001 3.999 5 N -0.360 5.360 6 C -0.022 4.022 7 C -0.171 4.171 8 C -0.198 4.198 9 C 0.299 3.701 10 O -0.389 6.389 11 N -0.313 5.313 12 C -0.057 4.057 13 C -0.058 4.058 14 C -0.185 4.185 15 C -0.173 4.173 16 C -0.003 4.003 17 C -0.542 4.542 18 H 0.078 0.922 19 C -0.146 4.146 20 N -0.539 5.539 21 Si 0.715 3.285 22 H -0.197 1.197 23 H -0.212 1.212 24 H -0.212 1.212 25 H 0.070 0.930 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.111 0.889 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.103 0.897 33 H 0.108 0.892 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.164 0.836 37 H 0.084 0.916 38 H 0.036 0.964 39 H 0.052 0.948 40 H 0.083 0.917 41 H 0.055 0.945 42 H 0.058 0.942 43 H 0.072 0.928 44 H 0.063 0.937 45 H 0.033 0.967 46 H 0.029 0.971 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.990 -1.475 21.101 21.246 hybrid contribution 1.078 0.465 -0.729 1.382 sum 3.068 -1.010 20.371 20.626 Atomic orbital electron populations 1.21726 0.94018 1.02528 1.01287 1.21891 0.96284 0.95820 0.90709 0.94371 1.21664 0.77713 1.02970 0.97530 1.48360 1.06332 1.17870 1.63408 1.22076 0.90045 0.91047 0.99058 1.22635 0.96573 0.95214 1.02727 1.22390 0.94699 0.97341 1.05352 1.20968 0.89608 0.82973 0.76597 1.90793 1.76471 1.26817 1.44859 1.60596 1.32448 1.35574 1.02702 1.22130 1.00096 0.93079 0.90412 1.20608 0.94122 0.96635 0.94391 1.21751 0.96789 0.99522 1.00411 1.21586 0.98246 0.97308 1.00150 1.19125 0.96902 0.93638 0.90657 1.21295 1.41915 0.97620 0.93374 0.92237 1.25016 0.95880 0.94858 0.98877 1.69984 1.48968 1.10206 1.24740 0.86612 0.78457 0.80120 0.83294 1.19738 1.21166 1.21221 0.93004 0.92091 0.91809 0.88935 0.90253 0.90498 0.91113 0.89670 0.89182 0.87943 0.87790 0.83591 0.91643 0.96433 0.94836 0.91716 0.94479 0.94249 0.92776 0.93742 0.96717 0.97055 0.93292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.38 37.16 0.35 -1.25 16 2 C 0.06 0.82 2.93 -67.71 -0.20 0.62 16 3 H 0.04 0.49 7.85 -51.93 -0.41 0.08 16 4 C 0.12 1.33 5.65 -4.04 -0.02 1.31 16 5 N -0.62 -6.72 2.59 -172.41 -0.45 -7.17 16 6 C 0.10 0.75 7.35 -3.12 -0.02 0.73 16 7 C -0.13 -0.92 7.19 -25.01 -0.18 -1.10 16 8 C -0.16 -1.41 6.87 -26.66 -0.18 -1.60 16 9 C 0.51 6.63 6.48 -10.86 -0.07 6.56 16 10 O -0.51 -8.93 16.89 5.56 0.09 -8.83 16 11 N -0.68 -11.07 5.51 -106.73 -0.59 -11.66 16 12 C 0.07 1.33 4.45 -3.83 -0.02 1.31 16 13 C -0.06 -1.22 0.60 -154.51 -0.09 -1.32 16 14 C -0.13 -2.60 7.89 37.15 0.29 -2.30 16 15 C -0.12 -2.46 8.06 37.16 0.30 -2.16 16 16 C 0.03 0.89 4.04 -27.88 -0.11 0.78 16 17 C -0.50 -14.17 7.65 -34.44 -0.26 -14.44 16 18 H 0.06 1.65 5.68 -52.49 -0.30 1.35 16 19 C 0.05 1.56 5.46 -17.81 -0.10 1.46 16 20 N -0.90 -27.27 13.29 55.43 0.74 -26.54 16 21 Si 0.89 22.04 29.54 -169.99 -5.02 17.01 16 22 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 25 H 0.05 0.47 8.14 -51.92 -0.42 0.05 16 26 H 0.06 0.78 7.27 -51.93 -0.38 0.41 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.09 1.15 7.80 -51.93 -0.41 0.75 16 29 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.34 5.80 3.60 -39.29 -0.14 5.66 16 37 H 0.07 1.24 7.25 -51.93 -0.38 0.86 16 38 H 0.02 0.33 8.06 -51.93 -0.42 -0.09 16 39 H 0.03 0.64 6.57 -51.93 -0.34 0.30 16 40 H 0.06 1.41 6.61 -51.92 -0.34 1.07 16 41 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.05 1.21 6.62 -51.93 -0.34 0.87 16 44 H 0.04 0.90 7.60 -51.93 -0.39 0.50 16 45 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 47 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 362.20 15.07 5.46 5.46 Total: -1.00 -32.92 362.20 -8.56 -41.49 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -8.48 Total: 1.62 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: -0.32 Total: -11.39 kcal Atomic # 7 Polarization: -45.06 SS G_CDS: -0.30 Total: -45.36 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: 0.09 Total: -8.83 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.92 -8.56 -41.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078052355.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.832 kcal (2) G-P(sol) polarization free energy of solvation -32.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds