Wall clock time and date at job start Tue Mar 31 2020 05:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46920 * 2 1 4 4 C 1.53003 * 109.47271 * 120.00069 * 2 1 3 5 5 N 1.46503 * 109.46693 * 177.48928 * 4 2 1 6 6 C 1.46765 * 124.35095 * 84.16890 * 5 4 2 7 7 C 1.54478 * 105.47417 * 197.03148 * 6 5 4 8 8 C 1.54790 * 101.69106 * 334.39212 * 7 6 5 9 9 C 1.34418 * 124.34655 * 264.18195 * 5 4 2 10 10 O 1.21278 * 124.94692 * 359.54830 * 9 5 4 11 11 N 1.46900 * 109.47227 * 240.00515 * 2 1 3 12 12 C 1.46892 * 111.00309 * 82.07780 * 11 2 1 13 13 C 1.53000 * 109.47216 * 180.02562 * 12 11 2 14 14 C 1.52993 * 109.46941 * 300.00105 * 13 12 11 15 15 C 1.52998 * 109.47088 * 60.00507 * 13 12 11 16 16 C 1.53005 * 109.46918 * 180.02562 * 13 12 11 17 17 C 1.50699 * 109.46674 * 179.97438 * 16 13 12 18 18 H 1.08002 * 120.00551 * 359.97438 * 17 16 13 19 19 C 1.37885 * 119.99913 * 179.97438 * 17 16 13 20 20 N 1.31520 * 119.99653 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 119.99961 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47517 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47053 * 120.00098 * 21 19 17 24 24 H 1.48501 * 109.47465 * 239.99840 * 21 19 17 25 25 H 1.09007 * 109.47063 * 299.99569 * 1 2 3 26 26 H 1.09000 * 109.47281 * 59.99557 * 1 2 3 27 27 H 1.09000 * 109.46920 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47097 * 57.48941 * 4 2 1 29 29 H 1.09004 * 109.47002 * 297.48492 * 4 2 1 30 30 H 1.09006 * 110.24265 * 316.03437 * 6 5 4 31 31 H 1.09000 * 110.24593 * 77.93953 * 6 5 4 32 32 H 1.09000 * 110.96812 * 92.69945 * 7 6 5 33 33 H 1.08994 * 110.97246 * 216.46481 * 7 6 5 34 34 H 1.08997 * 110.61258 * 266.39414 * 8 7 6 35 35 H 1.08999 * 110.42697 * 143.70636 * 8 7 6 36 36 H 1.00894 * 110.99707 * 206.03758 * 11 2 1 37 37 H 1.08999 * 109.47415 * 300.00713 * 12 11 2 38 38 H 1.09004 * 109.47119 * 60.00231 * 12 11 2 39 39 H 1.08999 * 109.47564 * 59.99893 * 14 13 12 40 40 H 1.09009 * 109.46964 * 180.02562 * 14 13 12 41 41 H 1.08999 * 109.47598 * 299.99580 * 14 13 12 42 42 H 1.08994 * 109.47330 * 60.00030 * 15 13 12 43 43 H 1.08995 * 109.47006 * 180.02562 * 15 13 12 44 44 H 1.09001 * 109.46954 * 299.99809 * 15 13 12 45 45 H 1.09001 * 109.47074 * 299.99578 * 16 13 12 46 46 H 1.08999 * 109.47479 * 60.00506 * 16 13 12 47 47 H 0.97002 * 119.99758 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5038 -0.7738 1.2192 6 6 4.3810 0.3082 1.6817 7 6 5.7666 0.0057 1.0693 8 6 5.6964 -1.5286 0.8771 9 6 4.2160 -1.8192 0.7644 10 8 3.7411 -2.8476 0.3313 11 7 2.0197 -0.6924 -1.1995 12 6 2.0170 0.2043 -2.3630 13 6 2.5316 -0.5509 -3.5901 14 6 3.9569 -1.0405 -3.3269 15 6 1.6234 -1.7503 -3.8686 16 6 2.5293 0.3834 -4.8018 17 6 3.0367 -0.3603 -6.0103 18 1 3.3317 -1.3956 -5.9228 19 6 3.1244 0.2809 -7.2278 20 7 2.7657 1.5418 -7.3342 21 14 3.7540 -0.6407 -8.7256 22 1 4.0900 -2.0357 -8.3434 23 1 2.7040 -0.6549 -9.7756 24 1 4.9681 0.0357 -9.2489 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.6405 -1.7351 1.2720 29 1 1.7140 -0.1820 2.1387 30 1 4.0130 1.2704 1.3254 31 1 4.4397 0.3070 2.7701 32 1 5.8910 0.5167 0.1146 33 1 6.5655 0.2737 1.7606 34 1 6.1216 -2.0431 1.7388 35 1 6.2133 -1.8216 -0.0366 36 1 2.9381 -1.0798 -1.0436 37 1 1.0015 0.5529 -2.5507 38 1 2.6636 1.0591 -2.1644 39 1 3.9590 -1.7059 -2.4635 40 1 4.3237 -1.5782 -4.2013 41 1 4.6039 -0.1861 -3.1285 42 1 0.6080 -1.4014 -4.0561 43 1 1.9903 -2.2885 -4.7425 44 1 1.6254 -2.4157 -3.0053 45 1 1.5140 0.7325 -4.9895 46 1 3.1766 1.2376 -4.6032 47 1 2.8277 1.9930 -8.1906 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078052355.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:45 Heat of formation + Delta-G solvation = -72.895128 kcal Electronic energy + Delta-G solvation = -23835.424028 eV Core-core repulsion = 20630.428943 eV Total energy + Delta-G solvation = -3204.995085 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.49382 -39.31687 -37.57733 -36.76335 -34.58094 -33.03805 -31.08600 -28.86902 -28.44494 -28.01752 -27.34873 -26.50928 -24.38587 -22.85191 -21.55616 -20.39402 -19.55904 -18.37073 -17.83270 -17.62741 -16.76420 -16.64981 -16.43016 -15.65701 -15.48218 -14.97854 -14.74295 -14.64228 -14.50428 -14.15046 -13.96334 -13.82510 -13.58059 -13.32955 -13.12187 -12.91372 -12.84891 -12.70949 -12.60002 -12.48870 -12.32645 -12.27644 -12.18362 -12.00098 -11.87289 -11.80909 -11.42483 -10.91405 -10.79799 -10.76495 -10.52505 -9.67931 -9.28172 -8.15664 -6.22510 1.38582 1.39825 1.52396 1.58501 2.07610 2.42617 3.18010 3.22032 3.48597 3.65348 3.87260 4.06011 4.07086 4.12337 4.19342 4.25821 4.31485 4.38955 4.48328 4.65048 4.67185 4.71623 4.72683 4.80934 4.89600 4.90702 4.92348 4.98831 5.04933 5.07561 5.13307 5.15259 5.21533 5.36096 5.43758 5.48535 5.50602 5.59401 5.63866 5.80921 5.89438 6.10804 6.19001 6.36249 6.50435 6.91430 7.19108 7.44617 8.96860 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020483 B = 0.004366 C = 0.004021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.671213 B = 6411.884128 C = 6961.977940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.062 3.938 3 H 0.044 0.956 4 C 0.126 3.874 5 N -0.623 5.623 6 C 0.096 3.904 7 C -0.126 4.126 8 C -0.155 4.155 9 C 0.496 3.504 10 O -0.571 6.571 11 N -0.685 5.685 12 C 0.086 3.914 13 C -0.055 4.055 14 C -0.114 4.114 15 C -0.105 4.105 16 C 0.044 3.956 17 C -0.515 4.515 18 H 0.061 0.939 19 C -0.001 4.001 20 N -0.936 5.936 21 Si 0.956 3.044 22 H -0.264 1.264 23 H -0.281 1.281 24 H -0.279 1.279 25 H 0.083 0.917 26 H 0.043 0.957 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.117 0.883 30 H 0.082 0.918 31 H 0.100 0.900 32 H 0.073 0.927 33 H 0.122 0.878 34 H 0.125 0.875 35 H 0.096 0.904 36 H 0.339 0.661 37 H 0.059 0.941 38 H 0.015 0.985 39 H 0.046 0.954 40 H 0.047 0.953 41 H 0.040 0.960 42 H 0.034 0.966 43 H 0.038 0.962 44 H 0.054 0.946 45 H -0.014 1.014 46 H -0.013 1.013 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.850 -0.615 23.408 23.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.049 4.049 3 H 0.062 0.938 4 C 0.004 3.996 5 N -0.357 5.357 6 C -0.025 4.025 7 C -0.163 4.163 8 C -0.195 4.195 9 C 0.285 3.715 10 O -0.450 6.450 11 N -0.320 5.320 12 C -0.044 4.044 13 C -0.055 4.055 14 C -0.172 4.172 15 C -0.162 4.162 16 C 0.006 3.994 17 C -0.553 4.553 18 H 0.079 0.921 19 C -0.198 4.198 20 N -0.577 5.577 21 Si 0.781 3.219 22 H -0.188 1.188 23 H -0.207 1.207 24 H -0.205 1.205 25 H 0.102 0.898 26 H 0.062 0.938 27 H 0.074 0.926 28 H 0.091 0.909 29 H 0.135 0.865 30 H 0.100 0.900 31 H 0.118 0.882 32 H 0.091 0.909 33 H 0.141 0.859 34 H 0.143 0.857 35 H 0.114 0.886 36 H 0.161 0.839 37 H 0.078 0.922 38 H 0.033 0.967 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.059 0.941 42 H 0.053 0.947 43 H 0.057 0.943 44 H 0.073 0.927 45 H 0.005 0.995 46 H 0.005 0.995 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.911 -1.287 22.954 23.173 hybrid contribution 0.760 0.464 -1.236 1.523 sum 3.671 -0.823 21.718 22.041 Atomic orbital electron populations 1.21702 0.93153 1.02230 1.02050 1.22041 0.96952 0.95947 0.89958 0.93788 1.21657 0.78009 1.02126 0.97858 1.48539 1.06611 1.18227 1.62343 1.22363 0.89435 0.89978 1.00769 1.22672 0.97437 0.93192 1.03029 1.22434 0.91850 0.99225 1.05960 1.21708 0.91445 0.82585 0.75764 1.90751 1.77745 1.29071 1.47478 1.60562 1.32336 1.35593 1.03531 1.21829 0.99376 0.92840 0.90326 1.20494 0.95186 0.95964 0.93897 1.21596 0.95914 0.99591 1.00088 1.21466 0.97802 0.97126 0.99824 1.18970 0.94359 0.93589 0.92457 1.21606 1.41623 0.97809 0.94268 0.92061 1.25883 0.96106 0.95693 1.02120 1.70109 1.50108 1.11803 1.25687 0.85531 0.77968 0.79082 0.79307 1.18846 1.20694 1.20476 0.89778 0.93779 0.92627 0.90864 0.86506 0.89957 0.88227 0.90860 0.85925 0.85744 0.88571 0.83936 0.92236 0.96677 0.93561 0.93369 0.94106 0.94654 0.94281 0.92696 0.99529 0.99466 0.93072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 9.38 71.98 0.68 -2.23 16 2 C 0.06 1.48 2.93 44.92 0.13 1.61 16 3 H 0.04 1.03 7.85 -2.39 -0.02 1.01 16 4 C 0.13 2.47 5.65 86.38 0.49 2.95 16 5 N -0.62 -12.17 2.59 -817.98 -2.12 -14.28 16 6 C 0.10 1.10 7.35 86.83 0.64 1.74 16 7 C -0.13 -1.36 7.19 31.71 0.23 -1.13 16 8 C -0.15 -2.50 6.87 30.64 0.21 -2.29 16 9 C 0.50 12.42 6.48 87.90 0.57 12.99 16 10 O -0.57 -20.07 16.89 -3.02 -0.05 -20.12 16 11 N -0.68 -22.10 5.51 -491.58 -2.71 -24.81 16 12 C 0.09 3.20 4.45 86.30 0.38 3.58 16 13 C -0.06 -2.40 0.60 -52.18 -0.03 -2.43 16 14 C -0.11 -4.70 7.89 71.98 0.57 -4.13 16 15 C -0.10 -4.52 8.06 71.98 0.58 -3.94 16 16 C 0.04 2.36 4.04 29.85 0.12 2.48 16 17 C -0.51 -29.50 7.65 25.60 0.20 -29.31 16 18 H 0.06 3.43 5.68 -2.91 -0.02 3.42 16 19 C 0.00 -0.07 5.46 84.66 0.46 0.39 16 20 N -0.94 -57.77 13.29 21.45 0.28 -57.49 16 21 Si 0.96 45.47 29.54 68.60 2.03 47.50 16 22 H -0.26 -12.11 7.11 99.48 0.71 -11.41 16 23 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 24 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 25 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 26 H 0.04 1.10 7.27 -2.39 -0.02 1.09 16 27 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.07 1.76 7.80 -2.39 -0.02 1.74 16 29 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 31 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.34 11.37 3.60 -89.70 -0.32 11.05 16 37 H 0.06 2.29 7.25 -2.39 -0.02 2.27 16 38 H 0.02 0.57 8.06 -2.39 -0.02 0.55 16 39 H 0.05 1.77 6.57 -2.39 -0.02 1.76 16 40 H 0.05 2.11 6.61 -2.38 -0.02 2.09 16 41 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.03 1.50 8.14 -2.39 -0.02 1.49 16 43 H 0.04 1.76 6.62 -2.39 -0.02 1.75 16 44 H 0.05 2.23 7.60 -2.39 -0.02 2.21 16 45 H -0.01 -0.81 8.14 -2.39 -0.02 -0.82 16 46 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 47 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -73.31 362.20 3.26 -70.06 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: 0.60 Total: 18.85 kcal Atomic # 6 Polarization: -24.91 SS G_CDS: 5.22 Total: -19.69 kcal Atomic # 7 Polarization: -92.05 SS G_CDS: -4.54 Total: -96.59 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -0.05 Total: -20.12 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -73.31 3.26 -70.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078052355.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.840 kcal (2) G-P(sol) polarization free energy of solvation -73.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds