Wall clock time and date at job start Tue Mar 31 2020 05:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47596 * 2 1 4 4 C 1.52999 * 109.47533 * 239.99870 * 2 1 3 5 5 N 1.46496 * 109.47397 * 185.00102 * 4 2 1 6 6 C 1.46763 * 124.35185 * 90.00601 * 5 4 2 7 7 C 1.54474 * 105.47458 * 197.01499 * 6 5 4 8 8 C 1.54627 * 101.76612 * 334.58108 * 7 6 5 9 9 C 1.34424 * 124.35066 * 269.70077 * 5 4 2 10 10 O 1.21282 * 124.93837 * 359.57299 * 9 5 4 11 11 N 1.46902 * 109.47251 * 119.99920 * 2 1 3 12 12 C 1.46898 * 111.00157 * 275.00398 * 11 2 1 13 13 C 1.52997 * 109.47123 * 179.97438 * 12 11 2 14 14 C 1.53006 * 109.47164 * 299.99884 * 13 12 11 15 15 C 1.52999 * 109.47592 * 59.99590 * 13 12 11 16 16 C 1.52997 * 109.47232 * 179.97438 * 13 12 11 17 17 C 1.50701 * 109.47212 * 179.97438 * 16 13 12 18 18 H 1.07998 * 120.00129 * 359.97438 * 17 16 13 19 19 C 1.37880 * 119.99861 * 180.02562 * 17 16 13 20 20 N 1.31511 * 120.00346 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99914 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.47135 * 89.99612 * 21 19 17 23 23 H 1.48504 * 109.46987 * 210.00073 * 21 19 17 24 24 H 1.48503 * 109.46980 * 329.99543 * 21 19 17 25 25 H 1.09001 * 109.47056 * 59.99873 * 1 2 3 26 26 H 1.09003 * 109.47112 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47102 * 299.99825 * 1 2 3 28 28 H 1.09003 * 109.47013 * 305.00603 * 4 2 1 29 29 H 1.09006 * 109.46727 * 64.99641 * 4 2 1 30 30 H 1.09002 * 110.23800 * 316.01388 * 6 5 4 31 31 H 1.08995 * 110.24564 * 77.92346 * 6 5 4 32 32 H 1.09002 * 110.97088 * 92.69946 * 7 6 5 33 33 H 1.08998 * 110.97345 * 216.46241 * 7 6 5 34 34 H 1.08997 * 110.49043 * 143.47170 * 8 7 6 35 35 H 1.09000 * 110.48995 * 265.98638 * 8 7 6 36 36 H 1.00909 * 110.99603 * 38.95478 * 11 2 1 37 37 H 1.09001 * 109.47062 * 59.99599 * 12 11 2 38 38 H 1.09002 * 109.46774 * 299.99237 * 12 11 2 39 39 H 1.09001 * 109.46801 * 180.02562 * 14 13 12 40 40 H 1.09001 * 109.46998 * 299.99705 * 14 13 12 41 41 H 1.09000 * 109.47050 * 59.99996 * 14 13 12 42 42 H 1.09000 * 109.47160 * 300.00333 * 15 13 12 43 43 H 1.09002 * 109.46719 * 60.00054 * 15 13 12 44 44 H 1.08993 * 109.47839 * 179.97438 * 15 13 12 45 45 H 1.09002 * 109.47153 * 299.99992 * 16 13 12 46 46 H 1.09001 * 109.47289 * 60.00075 * 16 13 12 47 47 H 0.96993 * 120.00442 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5001 -0.8264 -1.1905 6 6 4.2258 -1.9488 -0.5843 7 6 5.6664 -1.4369 -0.3634 8 6 5.7780 -0.3340 -1.4414 9 6 4.3472 0.0900 -1.6900 10 8 4.0130 1.1096 -2.2555 11 7 2.0197 -0.6925 1.1995 12 6 2.0824 0.2226 2.3469 13 6 2.5950 -0.5332 3.5745 14 6 1.6451 -1.6890 3.8952 15 6 3.9920 -1.0864 3.2863 16 6 2.6609 0.4199 4.7694 17 6 3.1652 -0.3246 5.9787 18 1 3.4134 -1.3730 5.9027 19 6 3.3087 0.3323 7.1824 20 7 3.0060 1.6087 7.2752 21 14 3.9332 -0.5909 8.6816 22 1 5.4142 -0.4988 8.7382 23 1 3.3525 0.0091 9.9097 24 1 3.5290 -2.0168 8.5887 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.6054 -1.7198 -1.2951 29 1 1.7516 -0.1583 -2.1370 30 1 3.7718 -2.2208 0.3686 31 1 4.2276 -2.8050 -1.2588 32 1 5.7827 -1.0184 0.6363 33 1 6.3935 -2.2296 -0.5397 34 1 6.3680 0.5040 -1.0703 35 1 6.2190 -0.7354 -2.3538 36 1 1.4495 -1.4980 1.4100 37 1 1.0870 0.6163 2.5525 38 1 2.7588 1.0461 2.1183 39 1 2.0101 -2.2272 4.7700 40 1 0.6498 -1.2950 4.1006 41 1 1.5985 -2.3680 3.0438 42 1 3.9455 -1.7654 2.4349 43 1 4.6688 -0.2630 3.0578 44 1 4.3574 -1.6244 4.1609 45 1 3.3379 1.2431 4.5407 46 1 1.6658 0.8143 4.9750 47 1 3.1073 2.0709 8.1219 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078052357.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:48 Heat of formation + Delta-G solvation = -55.145302 kcal Electronic energy + Delta-G solvation = -23734.175750 eV Core-core repulsion = 20529.950355 eV Total energy + Delta-G solvation = -3204.225395 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.28443 -38.01842 -36.29765 -35.57188 -32.70256 -31.88544 -29.71086 -27.47456 -26.89189 -26.39466 -26.26512 -24.99884 -22.50849 -21.80469 -21.04771 -19.27902 -17.91909 -16.67197 -16.55172 -16.21625 -15.60256 -14.96081 -14.70725 -14.41577 -14.18098 -13.76767 -13.64833 -13.30440 -13.02229 -12.91115 -12.83497 -12.50982 -12.33977 -12.02200 -11.94945 -11.74612 -11.59356 -11.36901 -11.07624 -11.01897 -10.94214 -10.82880 -10.77291 -10.51467 -10.27990 -10.13923 -9.71531 -9.67638 -9.03284 -8.87880 -8.63593 -8.32632 -7.98409 -5.96864 -3.97325 2.67935 3.13683 3.32183 3.39012 3.41014 4.33875 4.43763 4.51007 4.56118 4.85672 4.89967 5.03287 5.13687 5.26745 5.38045 5.38880 5.42870 5.59723 5.62060 5.65382 5.74883 5.76765 5.82361 5.87357 5.92591 5.97409 6.06438 6.11786 6.28316 6.32734 6.49524 6.60086 6.66264 6.75962 6.79387 7.16935 7.19003 7.23252 7.27201 7.39096 7.66929 7.70960 7.84924 8.03203 8.28905 8.47087 9.08193 9.65586 11.14774 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020867 B = 0.004243 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.484636 B = 6596.749021 C = 7174.007242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.063 3.937 3 H 0.079 0.921 4 C 0.140 3.860 5 N -0.596 5.596 6 C 0.105 3.895 7 C -0.131 4.131 8 C -0.155 4.155 9 C 0.515 3.485 10 O -0.547 6.547 11 N -0.675 5.675 12 C 0.073 3.927 13 C -0.057 4.057 14 C -0.127 4.127 15 C -0.113 4.113 16 C 0.034 3.966 17 C -0.507 4.507 18 H 0.059 0.941 19 C 0.055 3.945 20 N -0.897 5.897 21 Si 0.887 3.113 22 H -0.282 1.282 23 H -0.288 1.288 24 H -0.275 1.275 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.099 0.901 31 H 0.058 0.942 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.336 0.664 37 H 0.022 0.978 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.039 0.961 41 H 0.032 0.968 42 H 0.041 0.959 43 H 0.038 0.962 44 H 0.053 0.947 45 H 0.014 0.986 46 H 0.011 0.989 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.202 -8.791 -16.987 19.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.049 4.049 3 H 0.097 0.903 4 C 0.017 3.983 5 N -0.328 5.328 6 C -0.018 4.018 7 C -0.169 4.169 8 C -0.195 4.195 9 C 0.303 3.697 10 O -0.425 6.425 11 N -0.307 5.307 12 C -0.056 4.056 13 C -0.058 4.058 14 C -0.185 4.185 15 C -0.171 4.171 16 C -0.004 4.004 17 C -0.545 4.545 18 H 0.077 0.923 19 C -0.146 4.146 20 N -0.537 5.537 21 Si 0.715 3.285 22 H -0.208 1.208 23 H -0.214 1.214 24 H -0.200 1.200 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.117 0.883 31 H 0.077 0.923 32 H 0.106 0.894 33 H 0.102 0.898 34 H 0.116 0.884 35 H 0.115 0.885 36 H 0.155 0.845 37 H 0.041 0.959 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.058 0.942 41 H 0.051 0.949 42 H 0.060 0.940 43 H 0.057 0.943 44 H 0.072 0.928 45 H 0.032 0.968 46 H 0.030 0.970 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.602 -8.040 -17.321 19.106 hybrid contribution -0.707 -0.216 1.284 1.482 sum -0.106 -8.256 -16.037 18.038 Atomic orbital electron populations 1.22426 0.96919 1.02016 1.02504 1.22011 0.92482 0.98911 0.91504 0.90305 1.21375 0.78724 1.00791 0.97388 1.47941 1.05660 1.22098 1.57096 1.22128 0.91918 0.88164 0.99557 1.22581 0.96282 0.98159 0.99887 1.22295 0.95308 1.00958 1.00953 1.20910 0.88716 0.82654 0.77466 1.90695 1.82331 1.25526 1.43942 1.60667 1.56296 1.09940 1.03768 1.22098 0.98718 0.94870 0.89910 1.20612 0.94836 0.96074 0.94234 1.21758 0.98727 0.97810 1.00176 1.21599 0.95969 0.99699 0.99784 1.19116 0.96816 0.93678 0.90775 1.21220 1.42936 0.96235 0.94094 0.92329 1.25017 0.95863 0.94823 0.98865 1.69963 1.49129 1.08985 1.25617 0.86677 0.79003 0.79999 0.82802 1.20783 1.21410 1.19959 0.92251 0.92456 0.92101 0.90758 0.90291 0.88289 0.92340 0.89399 0.89769 0.88378 0.88517 0.84493 0.95930 0.91889 0.91793 0.94197 0.94893 0.93959 0.94324 0.92784 0.96783 0.97025 0.93160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.85 9.16 37.16 0.34 -1.51 16 2 C 0.06 0.75 2.89 -67.71 -0.20 0.55 16 3 H 0.08 1.16 7.80 -51.93 -0.40 0.76 16 4 C 0.14 1.51 5.64 -4.04 -0.02 1.49 16 5 N -0.60 -6.90 2.75 -172.42 -0.47 -7.38 16 6 C 0.11 0.99 7.10 -3.13 -0.02 0.96 16 7 C -0.13 -1.15 7.18 -25.10 -0.18 -1.33 16 8 C -0.15 -1.55 6.86 -26.74 -0.18 -1.74 16 9 C 0.51 7.05 8.02 -10.86 -0.09 6.96 16 10 O -0.55 -9.69 17.59 5.56 0.10 -9.59 16 11 N -0.68 -8.71 3.93 -106.73 -0.42 -9.13 16 12 C 0.07 1.21 4.45 -3.83 -0.02 1.19 16 13 C -0.06 -1.08 0.60 -154.51 -0.09 -1.17 16 14 C -0.13 -2.23 7.89 37.16 0.29 -1.94 16 15 C -0.11 -2.02 8.06 37.16 0.30 -1.72 16 16 C 0.03 0.83 4.04 -27.88 -0.11 0.72 16 17 C -0.51 -13.60 7.65 -34.44 -0.26 -13.86 16 18 H 0.06 1.52 5.68 -52.49 -0.30 1.23 16 19 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 20 N -0.90 -26.75 13.29 55.43 0.74 -26.02 16 21 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 27 H 0.06 0.71 7.45 -51.93 -0.39 0.32 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.08 0.89 7.92 -51.93 -0.41 0.48 16 30 H 0.10 1.01 6.03 -51.93 -0.31 0.70 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.34 4.08 6.51 -39.29 -0.26 3.83 16 37 H 0.02 0.39 7.44 -51.93 -0.39 0.00 16 38 H 0.06 1.16 8.06 -51.93 -0.42 0.74 16 39 H 0.06 1.23 6.62 -51.93 -0.34 0.89 16 40 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.03 0.47 6.57 -51.93 -0.34 0.13 16 42 H 0.04 0.63 6.56 -51.93 -0.34 0.29 16 43 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.05 1.05 6.62 -51.93 -0.34 0.70 16 45 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 46 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 47 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 362.66 15.07 5.47 5.47 Total: -1.00 -31.26 362.66 -8.41 -39.66 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -8.45 Total: 0.59 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: -0.34 Total: -9.95 kcal Atomic # 7 Polarization: -42.37 SS G_CDS: -0.16 Total: -42.52 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.10 Total: -9.59 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.26 -8.41 -39.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078052357.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.483 kcal (2) G-P(sol) polarization free energy of solvation -31.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds