Wall clock time and date at job start Tue Mar 31 2020 05:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.47268 * 2 1 4 4 C 1.34779 * 119.99712 * 269.99578 * 3 2 1 5 5 O 1.21282 * 119.99927 * 179.97438 * 4 3 2 6 6 C 1.50699 * 120.00033 * 0.02562 * 4 3 2 7 7 N 1.46896 * 109.47139 * 179.97438 * 6 4 3 8 8 C 1.46899 * 111.00523 * 293.95939 * 7 6 4 9 9 C 1.46897 * 111.00104 * 169.99668 * 7 6 4 10 10 C 1.50704 * 109.47247 * 190.00311 * 9 7 6 11 11 H 1.07998 * 120.00136 * 0.02562 * 10 9 7 12 12 C 1.37877 * 120.00053 * 180.02562 * 10 9 7 13 13 N 1.31510 * 120.00021 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00070 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47223 * 89.99700 * 14 12 10 16 16 H 1.48500 * 109.47079 * 209.99804 * 14 12 10 17 17 H 1.48504 * 109.46995 * 329.99738 * 14 12 10 18 18 C 1.46500 * 120.00123 * 89.99738 * 3 2 1 19 19 C 1.52997 * 109.47007 * 119.99987 * 18 3 2 20 20 C 1.52999 * 109.47317 * 179.97438 * 19 18 3 21 21 C 1.53005 * 109.47159 * 300.00546 * 20 19 18 22 22 C 1.52997 * 109.47452 * 59.99536 * 21 20 19 23 23 C 1.53000 * 109.47023 * 239.99779 * 18 3 2 24 24 H 1.08998 * 109.47148 * 300.00125 * 1 2 3 25 25 H 1.08994 * 109.46805 * 60.00080 * 1 2 3 26 26 H 1.09004 * 109.46973 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47549 * 239.99212 * 2 1 3 28 28 H 1.09009 * 109.47062 * 119.99623 * 2 1 3 29 29 H 1.08996 * 109.47258 * 300.00041 * 6 4 3 30 30 H 1.09000 * 109.47247 * 59.99881 * 6 4 3 31 31 H 1.08997 * 109.47566 * 59.99207 * 8 7 6 32 32 H 1.08998 * 109.47620 * 179.97438 * 8 7 6 33 33 H 1.09004 * 109.46695 * 299.99804 * 8 7 6 34 34 H 1.09000 * 109.47626 * 310.00227 * 9 7 6 35 35 H 1.09001 * 109.46986 * 70.00478 * 9 7 6 36 36 H 0.97000 * 120.00533 * 179.97438 * 13 12 10 37 37 H 1.09002 * 109.47092 * 0.02562 * 18 3 2 38 38 H 1.08996 * 109.47853 * 300.00060 * 19 18 3 39 39 H 1.09002 * 109.47153 * 60.00089 * 19 18 3 40 40 H 1.09000 * 109.47486 * 180.02562 * 20 19 18 41 41 H 1.09002 * 109.46716 * 60.00091 * 20 19 18 42 42 H 1.09002 * 109.46935 * 299.99411 * 21 20 19 43 43 H 1.09001 * 109.46812 * 179.97438 * 21 20 19 44 44 H 1.08993 * 109.47194 * 179.97438 * 22 21 20 45 45 H 1.09002 * 109.46695 * 59.99734 * 22 21 20 46 46 H 1.08992 * 109.47399 * 300.00063 * 23 18 3 47 47 H 1.09004 * 109.46724 * 60.00549 * 23 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2431 2.0165 -1.1673 5 8 2.6469 3.1601 -1.1673 6 6 1.9914 1.3062 -2.4723 7 7 2.3092 2.2062 -3.5889 8 6 1.3829 3.3457 -3.6268 9 6 2.3052 1.4817 -4.8667 10 6 2.8696 2.3668 -5.9480 11 1 3.1987 3.3675 -5.7096 12 6 2.9657 1.8993 -7.2415 13 7 2.5653 0.6807 -7.5316 14 14 3.6659 2.9962 -8.5815 15 1 5.1354 2.7993 -8.6649 16 1 3.0446 2.6448 -9.8838 17 1 3.3742 4.4167 -8.2612 18 6 2.2625 2.0718 1.2687 19 6 3.7335 2.4847 1.3498 20 6 3.9884 3.2065 2.6745 21 6 3.1038 4.4523 2.7549 22 6 1.6328 4.0395 2.6738 23 6 1.3780 3.3176 1.3496 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 2.6212 0.4185 -2.5302 30 1 0.9433 1.0124 -2.5299 31 1 1.4571 3.9055 -2.6945 32 1 1.6409 3.9962 -4.4624 33 1 0.3632 2.9809 -3.7513 34 1 2.9160 0.5833 -4.7770 35 1 1.2832 1.2021 -5.1226 36 1 2.6325 0.3518 -8.4417 37 1 2.0268 1.4039 2.0972 38 1 4.3638 1.5973 1.2921 39 1 3.9696 3.1525 0.5213 40 1 5.0363 3.5011 2.7320 41 1 3.7521 2.5391 3.5032 42 1 3.3400 5.1198 1.9261 43 1 3.2851 4.9663 3.6989 44 1 1.0026 4.9269 2.7316 45 1 1.3966 3.3720 3.5026 46 1 1.6141 3.9854 0.5212 47 1 0.3300 3.0234 1.2919 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078636499.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:49 Heat of formation + Delta-G solvation = -44.912990 kcal Electronic energy + Delta-G solvation = -23639.363793 eV Core-core repulsion = 20435.582105 eV Total energy + Delta-G solvation = -3203.781689 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.33071 -37.81542 -35.91183 -35.44979 -32.48475 -31.25366 -30.78281 -29.37416 -27.69460 -26.77174 -24.26673 -23.30137 -22.58615 -22.53324 -20.52100 -19.95572 -18.54559 -16.71193 -16.45482 -16.06573 -15.23632 -14.98824 -14.61211 -14.28224 -14.15930 -13.94721 -13.81686 -13.77606 -13.58061 -12.99717 -12.62127 -12.47265 -12.34571 -12.22769 -11.94978 -11.70666 -11.49919 -11.42362 -11.24159 -11.07330 -10.89481 -10.80368 -10.75714 -10.61778 -10.43388 -10.27866 -10.21947 -9.90373 -9.32980 -8.87296 -8.48291 -8.40048 -7.17455 -6.00384 -4.00701 3.02295 3.07823 3.35624 3.40997 3.46070 4.45146 4.55605 4.70995 4.78087 4.89586 4.92108 5.07169 5.13465 5.23310 5.25601 5.31431 5.35220 5.37488 5.47445 5.49713 5.50789 5.61389 5.70489 5.73056 5.82377 5.85413 5.92998 5.98373 6.07959 6.11081 6.17797 6.24605 6.34579 6.36903 6.42087 6.48923 6.83177 6.95054 7.26670 7.33869 7.58358 7.84630 8.08936 8.23021 8.53692 8.64933 9.07519 9.63319 11.10757 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024179 B = 0.003881 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.766005 B = 7212.852766 C = 7816.125616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.105 3.895 3 N -0.621 5.621 4 C 0.519 3.481 5 O -0.511 6.511 6 C 0.038 3.962 7 N -0.523 5.523 8 C 0.035 3.965 9 C 0.193 3.807 10 C -0.504 4.504 11 H 0.065 0.935 12 C 0.054 3.946 13 N -0.901 5.901 14 Si 0.899 3.101 15 H -0.280 1.280 16 H -0.288 1.288 17 H -0.273 1.273 18 C 0.159 3.841 19 C -0.138 4.138 20 C -0.112 4.112 21 C -0.121 4.121 22 C -0.113 4.113 23 C -0.136 4.136 24 H 0.055 0.945 25 H 0.059 0.941 26 H 0.065 0.935 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.093 0.907 30 H 0.049 0.951 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.002 0.998 34 H 0.029 0.971 35 H -0.009 1.009 36 H 0.261 0.739 37 H 0.077 0.923 38 H 0.058 0.942 39 H 0.090 0.910 40 H 0.062 0.938 41 H 0.056 0.944 42 H 0.066 0.934 43 H 0.057 0.943 44 H 0.061 0.939 45 H 0.056 0.944 46 H 0.088 0.912 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.365 -0.438 21.834 22.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.018 4.018 3 N -0.357 5.357 4 C 0.308 3.692 5 O -0.385 6.385 6 C -0.094 4.094 7 N -0.247 5.247 8 C -0.114 4.114 9 C 0.068 3.932 10 C -0.542 4.542 11 H 0.083 0.917 12 C -0.146 4.146 13 N -0.541 5.541 14 Si 0.727 3.273 15 H -0.206 1.206 16 H -0.214 1.214 17 H -0.198 1.198 18 C 0.055 3.945 19 C -0.176 4.176 20 C -0.151 4.151 21 C -0.158 4.158 22 C -0.151 4.151 23 C -0.175 4.175 24 H 0.074 0.926 25 H 0.078 0.922 26 H 0.084 0.916 27 H 0.100 0.900 28 H 0.093 0.907 29 H 0.111 0.889 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.021 0.979 34 H 0.047 0.953 35 H 0.009 0.991 36 H 0.070 0.930 37 H 0.095 0.905 38 H 0.077 0.923 39 H 0.108 0.892 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.084 0.916 43 H 0.076 0.924 44 H 0.080 0.920 45 H 0.075 0.925 46 H 0.107 0.893 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.684 0.239 21.720 21.886 hybrid contribution -0.569 -0.131 -0.921 1.091 sum -3.253 0.108 20.799 21.052 Atomic orbital electron populations 1.22230 0.96103 1.02156 1.02513 1.21560 0.94355 0.82690 1.03196 1.48227 1.67499 1.14121 1.05804 1.20904 0.76541 0.86862 0.84904 1.90572 1.43587 1.17627 1.86750 1.22018 0.99979 0.96871 0.90532 1.61843 1.50449 1.08795 1.03644 1.22342 0.91898 0.94626 1.02493 1.19776 0.95564 0.93948 0.83871 1.21164 1.40542 1.00505 0.92026 0.91703 1.24977 0.95741 0.95236 0.98681 1.69953 1.48015 1.16242 1.19885 0.86480 0.79157 0.80840 0.80848 1.20616 1.21360 1.19806 1.20939 0.95145 0.93469 0.84914 1.21981 0.95448 1.01143 0.99059 1.21463 0.99542 0.96878 0.97172 1.21549 0.94915 0.97771 1.01600 1.21454 0.96552 0.99885 0.97176 1.21964 0.98709 0.97772 0.99023 0.92552 0.92193 0.91591 0.90015 0.90686 0.88856 0.93328 0.91723 0.90848 0.97915 0.95286 0.99097 0.92974 0.90505 0.92344 0.89162 0.91974 0.92489 0.91551 0.92384 0.92048 0.92480 0.89346 0.92499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.57 10.24 37.16 0.38 -1.18 16 2 C 0.11 1.04 5.90 -4.04 -0.02 1.02 16 3 N -0.62 -7.96 2.42 -166.10 -0.40 -8.36 16 4 C 0.52 8.73 6.82 -10.99 -0.07 8.65 16 5 O -0.51 -10.04 10.52 5.56 0.06 -9.98 16 6 C 0.04 0.69 4.00 -4.98 -0.02 0.67 16 7 N -0.52 -11.99 4.49 -245.83 -1.10 -13.09 16 8 C 0.03 0.75 9.03 60.06 0.54 1.30 16 9 C 0.19 5.13 4.72 -4.98 -0.02 5.10 16 10 C -0.50 -14.54 8.46 -34.44 -0.29 -14.83 16 11 H 0.06 1.89 7.12 -52.49 -0.37 1.51 16 12 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 13 N -0.90 -26.92 13.29 55.43 0.74 -26.19 16 14 Si 0.90 22.08 29.54 -169.99 -5.02 17.06 16 15 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 16 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 17 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 18 C 0.16 1.82 2.55 -67.93 -0.17 1.65 16 19 C -0.14 -1.67 5.13 -26.73 -0.14 -1.81 16 20 C -0.11 -1.10 5.92 -26.73 -0.16 -1.26 16 21 C -0.12 -1.18 5.92 -26.73 -0.16 -1.34 16 22 C -0.11 -1.08 5.92 -26.76 -0.16 -1.24 16 23 C -0.14 -1.61 5.13 -26.75 -0.14 -1.75 16 24 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.65 7.22 -51.93 -0.37 0.27 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.08 0.82 6.44 -51.93 -0.33 0.49 16 28 H 0.07 0.59 7.92 -51.92 -0.41 0.18 16 29 H 0.09 1.61 7.19 -51.93 -0.37 1.24 16 30 H 0.05 0.83 7.16 -51.93 -0.37 0.46 16 31 H 0.06 1.34 5.88 -51.93 -0.31 1.04 16 32 H 0.07 1.69 6.76 -51.93 -0.35 1.34 16 33 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 34 H 0.03 0.80 7.93 -51.93 -0.41 0.39 16 35 H -0.01 -0.24 8.12 -51.93 -0.42 -0.67 16 36 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 37 H 0.08 0.74 7.79 -51.93 -0.40 0.33 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.09 1.40 6.17 -51.93 -0.32 1.08 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 46 H 0.09 1.33 6.17 -51.93 -0.32 1.01 16 47 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 356.53 15.07 5.37 5.37 Total: -1.00 -31.69 356.53 -9.45 -41.14 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -8.56 Total: -2.41 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: -0.53 Total: -3.54 kcal Atomic # 7 Polarization: -46.87 SS G_CDS: -0.77 Total: -47.64 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.06 Total: -9.98 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.69 -9.45 -41.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078636499.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.772 kcal (2) G-P(sol) polarization free energy of solvation -31.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds