Wall clock time and date at job start Tue Mar 31 2020 05:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.47268 * 2 1 4 4 C 1.34779 * 119.99712 * 269.99578 * 3 2 1 5 5 O 1.21282 * 119.99927 * 179.97438 * 4 3 2 6 6 C 1.50699 * 120.00033 * 0.02562 * 4 3 2 7 7 N 1.46896 * 109.47139 * 179.97438 * 6 4 3 8 8 C 1.46899 * 111.00523 * 293.95939 * 7 6 4 9 9 C 1.46897 * 111.00104 * 169.99668 * 7 6 4 10 10 C 1.50704 * 109.47247 * 190.00311 * 9 7 6 11 11 H 1.07998 * 120.00136 * 0.02562 * 10 9 7 12 12 C 1.37877 * 120.00053 * 180.02562 * 10 9 7 13 13 N 1.31510 * 120.00021 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00070 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47223 * 89.99700 * 14 12 10 16 16 H 1.48500 * 109.47079 * 209.99804 * 14 12 10 17 17 H 1.48504 * 109.46995 * 329.99738 * 14 12 10 18 18 C 1.46500 * 120.00123 * 89.99738 * 3 2 1 19 19 C 1.52997 * 109.47007 * 119.99987 * 18 3 2 20 20 C 1.52999 * 109.47317 * 179.97438 * 19 18 3 21 21 C 1.53005 * 109.47159 * 300.00546 * 20 19 18 22 22 C 1.52997 * 109.47452 * 59.99536 * 21 20 19 23 23 C 1.53000 * 109.47023 * 239.99779 * 18 3 2 24 24 H 1.08998 * 109.47148 * 300.00125 * 1 2 3 25 25 H 1.08994 * 109.46805 * 60.00080 * 1 2 3 26 26 H 1.09004 * 109.46973 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47549 * 239.99212 * 2 1 3 28 28 H 1.09009 * 109.47062 * 119.99623 * 2 1 3 29 29 H 1.08996 * 109.47258 * 300.00041 * 6 4 3 30 30 H 1.09000 * 109.47247 * 59.99881 * 6 4 3 31 31 H 1.08997 * 109.47566 * 59.99207 * 8 7 6 32 32 H 1.08998 * 109.47620 * 179.97438 * 8 7 6 33 33 H 1.09004 * 109.46695 * 299.99804 * 8 7 6 34 34 H 1.09000 * 109.47626 * 310.00227 * 9 7 6 35 35 H 1.09001 * 109.46986 * 70.00478 * 9 7 6 36 36 H 0.97000 * 120.00533 * 179.97438 * 13 12 10 37 37 H 1.09002 * 109.47092 * 0.02562 * 18 3 2 38 38 H 1.08996 * 109.47853 * 300.00060 * 19 18 3 39 39 H 1.09002 * 109.47153 * 60.00089 * 19 18 3 40 40 H 1.09000 * 109.47486 * 180.02562 * 20 19 18 41 41 H 1.09002 * 109.46716 * 60.00091 * 20 19 18 42 42 H 1.09002 * 109.46935 * 299.99411 * 21 20 19 43 43 H 1.09001 * 109.46812 * 179.97438 * 21 20 19 44 44 H 1.08993 * 109.47194 * 179.97438 * 22 21 20 45 45 H 1.09002 * 109.46695 * 59.99734 * 22 21 20 46 46 H 1.08992 * 109.47399 * 300.00063 * 23 18 3 47 47 H 1.09004 * 109.46724 * 60.00549 * 23 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2431 2.0165 -1.1673 5 8 2.6469 3.1601 -1.1673 6 6 1.9914 1.3062 -2.4723 7 7 2.3092 2.2062 -3.5889 8 6 1.3829 3.3457 -3.6268 9 6 2.3052 1.4817 -4.8667 10 6 2.8696 2.3668 -5.9480 11 1 3.1987 3.3675 -5.7096 12 6 2.9657 1.8993 -7.2415 13 7 2.5653 0.6807 -7.5316 14 14 3.6659 2.9962 -8.5815 15 1 5.1354 2.7993 -8.6649 16 1 3.0446 2.6448 -9.8838 17 1 3.3742 4.4167 -8.2612 18 6 2.2625 2.0718 1.2687 19 6 3.7335 2.4847 1.3498 20 6 3.9884 3.2065 2.6745 21 6 3.1038 4.4523 2.7549 22 6 1.6328 4.0395 2.6738 23 6 1.3780 3.3176 1.3496 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 2.6212 0.4185 -2.5302 30 1 0.9433 1.0124 -2.5299 31 1 1.4571 3.9055 -2.6945 32 1 1.6409 3.9962 -4.4624 33 1 0.3632 2.9809 -3.7513 34 1 2.9160 0.5833 -4.7770 35 1 1.2832 1.2021 -5.1226 36 1 2.6325 0.3518 -8.4417 37 1 2.0268 1.4039 2.0972 38 1 4.3638 1.5973 1.2921 39 1 3.9696 3.1525 0.5213 40 1 5.0363 3.5011 2.7320 41 1 3.7521 2.5391 3.5032 42 1 3.3400 5.1198 1.9261 43 1 3.2851 4.9663 3.6989 44 1 1.0026 4.9269 2.7316 45 1 1.3966 3.3720 3.5026 46 1 1.6141 3.9854 0.5212 47 1 0.3300 3.0234 1.2919 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078636499.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:49 Heat of formation + Delta-G solvation = -64.139866 kcal Electronic energy + Delta-G solvation = -23640.197533 eV Core-core repulsion = 20435.582105 eV Total energy + Delta-G solvation = -3204.615428 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.49670 -38.99102 -37.48151 -36.61146 -34.64078 -32.14015 -31.64005 -30.61592 -29.39707 -28.44632 -26.11684 -24.25495 -23.72751 -23.43621 -22.24366 -20.86975 -19.80273 -18.50424 -17.81532 -17.35772 -16.71201 -16.52212 -16.01260 -15.51525 -15.36794 -15.25398 -15.11753 -14.81485 -14.73148 -14.23289 -13.99764 -13.68029 -13.64798 -13.26922 -13.19806 -13.07802 -12.82503 -12.72095 -12.65439 -12.56651 -12.47137 -12.25423 -11.98660 -11.96343 -11.87036 -11.55756 -11.40151 -11.12759 -11.10768 -10.62535 -10.29886 -9.55710 -9.01447 -8.21976 -6.31180 1.40227 1.41766 1.53100 1.70653 1.98961 2.40610 3.10435 3.31660 3.57000 3.86396 3.90417 3.99773 4.13228 4.23807 4.31210 4.31815 4.37554 4.44032 4.45151 4.54712 4.59703 4.63309 4.65473 4.65753 4.68684 4.85263 4.96990 4.99075 5.08483 5.12676 5.13233 5.16946 5.24608 5.25535 5.31959 5.36433 5.38038 5.42508 5.55172 5.63132 5.84986 6.00488 6.26966 6.39848 6.62415 6.83274 7.34648 7.38320 8.89065 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024179 B = 0.003881 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.766005 B = 7212.852766 C = 7816.125616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.097 3.903 3 N -0.611 5.611 4 C 0.520 3.480 5 O -0.547 6.547 6 C 0.037 3.963 7 N -0.539 5.539 8 C 0.046 3.954 9 C 0.210 3.790 10 C -0.527 4.527 11 H 0.056 0.944 12 C 0.006 3.994 13 N -0.931 5.931 14 Si 0.968 3.032 15 H -0.273 1.273 16 H -0.278 1.278 17 H -0.269 1.269 18 C 0.156 3.844 19 C -0.136 4.136 20 C -0.107 4.107 21 C -0.121 4.121 22 C -0.107 4.107 23 C -0.133 4.133 24 H 0.063 0.937 25 H 0.036 0.964 26 H 0.086 0.914 27 H 0.077 0.923 28 H 0.107 0.893 29 H 0.100 0.900 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.053 0.947 33 H 0.009 0.991 34 H 0.011 0.989 35 H -0.030 1.030 36 H 0.266 0.734 37 H 0.112 0.888 38 H 0.059 0.941 39 H 0.048 0.952 40 H 0.062 0.938 41 H 0.082 0.918 42 H 0.039 0.961 43 H 0.078 0.922 44 H 0.063 0.937 45 H 0.082 0.918 46 H 0.049 0.951 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.605 -1.070 23.920 24.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.025 4.025 3 N -0.344 5.344 4 C 0.308 3.692 5 O -0.424 6.424 6 C -0.094 4.094 7 N -0.263 5.263 8 C -0.102 4.102 9 C 0.084 3.916 10 C -0.565 4.565 11 H 0.074 0.926 12 C -0.192 4.192 13 N -0.571 5.571 14 Si 0.792 3.208 15 H -0.198 1.198 16 H -0.203 1.203 17 H -0.193 1.193 18 C 0.054 3.946 19 C -0.174 4.174 20 C -0.145 4.145 21 C -0.159 4.159 22 C -0.145 4.145 23 C -0.172 4.172 24 H 0.082 0.918 25 H 0.055 0.945 26 H 0.105 0.895 27 H 0.096 0.904 28 H 0.126 0.874 29 H 0.118 0.882 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.028 0.972 34 H 0.029 0.971 35 H -0.013 1.013 36 H 0.075 0.925 37 H 0.130 0.870 38 H 0.078 0.922 39 H 0.067 0.933 40 H 0.081 0.919 41 H 0.101 0.899 42 H 0.058 0.942 43 H 0.096 0.904 44 H 0.082 0.918 45 H 0.100 0.900 46 H 0.067 0.933 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.940 -0.420 23.850 24.034 hybrid contribution -0.516 0.010 -1.499 1.586 sum -3.456 -0.410 22.351 22.620 Atomic orbital electron populations 1.22180 0.95239 1.03280 1.01753 1.21858 0.95021 0.80945 1.04664 1.48235 1.65982 1.15124 1.05064 1.20583 0.76725 0.86390 0.85544 1.90574 1.45477 1.19036 1.87310 1.22068 1.00905 0.96435 0.89970 1.61699 1.51603 1.09616 1.03424 1.22201 0.91922 0.94067 1.02005 1.19425 0.93591 0.93194 0.85374 1.21427 1.41244 1.00529 0.93327 0.92606 1.25837 0.95772 0.96654 1.00952 1.70055 1.48586 1.17742 1.20727 0.85412 0.78592 0.78935 0.77858 1.19819 1.20283 1.19329 1.21152 0.94633 0.93959 0.84850 1.21917 0.95987 1.00501 0.99028 1.21445 0.99671 0.96984 0.96415 1.21552 0.95198 0.97569 1.01546 1.21438 0.96333 1.00278 0.96476 1.21891 0.98840 0.97411 0.99011 0.91756 0.94467 0.89540 0.90423 0.87440 0.88186 0.91982 0.90908 0.92817 0.97215 0.97064 1.01278 0.92532 0.86979 0.92227 0.93320 0.91908 0.89936 0.94208 0.90363 0.91784 0.89986 0.93257 0.92168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.63 10.24 71.98 0.74 -1.89 16 2 C 0.10 1.68 5.90 86.38 0.51 2.19 16 3 N -0.61 -14.89 2.42 -797.82 -1.93 -16.83 16 4 C 0.52 17.68 6.82 87.66 0.60 18.28 16 5 O -0.55 -22.33 10.52 -3.04 -0.03 -22.36 16 6 C 0.04 1.39 4.00 85.56 0.34 1.73 16 7 N -0.54 -25.55 4.49 -931.67 -4.18 -29.73 16 8 C 0.05 2.08 9.03 127.69 1.15 3.23 16 9 C 0.21 11.55 4.72 85.56 0.40 11.95 16 10 C -0.53 -31.22 8.46 25.60 0.22 -31.00 16 11 H 0.06 3.34 7.12 -2.91 -0.02 3.32 16 12 C 0.01 0.36 5.46 84.66 0.46 0.82 16 13 N -0.93 -56.26 13.29 21.45 0.28 -55.98 16 14 Si 0.97 45.57 29.54 68.60 2.03 47.60 16 15 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 16 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 17 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 18 C 0.16 3.28 2.55 44.99 0.11 3.39 16 19 C -0.14 -3.18 5.13 30.59 0.16 -3.02 16 20 C -0.11 -1.87 5.92 30.60 0.18 -1.69 16 21 C -0.12 -2.18 5.92 30.60 0.18 -2.00 16 22 C -0.11 -1.82 5.92 30.58 0.18 -1.64 16 23 C -0.13 -3.00 5.13 30.58 0.16 -2.84 16 24 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.04 0.76 7.22 -2.39 -0.02 0.74 16 26 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 27 H 0.08 1.43 6.44 -2.39 -0.02 1.42 16 28 H 0.11 1.23 7.92 -2.38 -0.02 1.21 16 29 H 0.10 3.52 7.19 -2.39 -0.02 3.50 16 30 H 0.06 2.14 7.16 -2.39 -0.02 2.12 16 31 H 0.07 3.15 5.88 -2.39 -0.01 3.13 16 32 H 0.05 2.57 6.76 -2.39 -0.02 2.56 16 33 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 34 H 0.01 0.65 7.93 -2.39 -0.02 0.63 16 35 H -0.03 -1.77 8.12 -2.39 -0.02 -1.79 16 36 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 37 H 0.11 1.64 7.79 -2.39 -0.02 1.62 16 38 H 0.06 1.34 8.14 -2.39 -0.02 1.33 16 39 H 0.05 1.57 6.17 -2.39 -0.01 1.55 16 40 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.04 0.91 8.14 -2.39 -0.02 0.90 16 43 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.05 1.53 6.17 -2.39 -0.01 1.51 16 47 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -70.72 356.53 2.47 -68.25 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: 0.91 Total: 11.54 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: 5.39 Total: -2.49 kcal Atomic # 7 Polarization: -96.71 SS G_CDS: -5.83 Total: -102.54 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: -0.03 Total: -22.36 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -70.72 2.47 -68.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078636499.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.107 kcal (2) G-P(sol) polarization free energy of solvation -70.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds