Wall clock time and date at job start Tue Mar 31 2020 05:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47167 * 2 1 4 4 C 1.53010 * 109.47024 * 119.99935 * 2 1 3 5 5 H 1.09001 * 109.47095 * 300.00271 * 4 2 1 6 6 C 1.53002 * 109.47095 * 60.00021 * 4 2 1 7 7 N 1.46501 * 109.47100 * 179.97438 * 4 2 1 8 8 C 1.34769 * 120.00145 * 154.99685 * 7 4 2 9 9 O 1.21292 * 119.99735 * 0.02562 * 8 7 4 10 10 C 1.50697 * 120.00301 * 179.97438 * 8 7 4 11 11 N 1.46898 * 109.47146 * 180.02562 * 10 8 7 12 12 C 1.46903 * 111.00051 * 190.00283 * 11 10 8 13 13 C 1.50702 * 109.47436 * 75.57831 * 12 11 10 14 14 H 1.08004 * 119.99637 * 355.53535 * 13 12 11 15 15 C 1.37876 * 119.99978 * 175.52984 * 13 12 11 16 16 N 1.31515 * 120.00015 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99642 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.46873 * 90.00535 * 17 15 13 19 19 H 1.48502 * 109.46872 * 210.00098 * 17 15 13 20 20 H 1.48497 * 109.47287 * 330.00329 * 17 15 13 21 21 C 1.46894 * 111.00463 * 66.04684 * 11 10 8 22 22 C 1.53004 * 109.47643 * 195.92018 * 21 11 10 23 23 C 1.52990 * 117.50030 * 243.78745 * 22 21 11 24 24 C 1.52996 * 117.49982 * 175.16241 * 22 21 11 25 25 H 1.09001 * 109.47406 * 299.99985 * 1 2 3 26 26 H 1.08997 * 109.46930 * 60.00083 * 1 2 3 27 27 H 1.09005 * 109.47024 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47406 * 240.00015 * 2 1 3 29 29 H 1.08997 * 109.47128 * 299.99796 * 3 2 1 30 30 H 1.08995 * 109.47014 * 60.00159 * 3 2 1 31 31 H 1.09006 * 109.46904 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.46945 * 60.00158 * 6 4 2 33 33 H 1.08997 * 109.47128 * 180.02562 * 6 4 2 34 34 H 1.08997 * 109.47119 * 300.00021 * 6 4 2 35 35 H 0.97004 * 119.99655 * 335.00292 * 7 4 2 36 36 H 1.08996 * 109.47000 * 60.00059 * 10 8 7 37 37 H 1.09003 * 109.47100 * 300.00010 * 10 8 7 38 38 H 1.09002 * 109.47380 * 195.58437 * 12 11 10 39 39 H 1.09006 * 109.47077 * 315.58123 * 12 11 10 40 40 H 0.97003 * 119.99759 * 179.97438 * 16 15 13 41 41 H 1.08995 * 109.47071 * 315.91974 * 21 11 10 42 42 H 1.08998 * 109.47424 * 75.91786 * 21 11 10 43 43 H 1.09005 * 115.54524 * 29.49753 * 22 21 11 44 44 H 1.08998 * 117.50253 * 0.02562 * 23 22 21 45 45 H 1.09007 * 117.50229 * 145.01738 * 23 22 21 46 46 H 1.09005 * 117.49744 * 214.98087 * 24 22 21 47 47 H 1.08992 * 117.49949 * 0.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6766 -0.2075 2.1393 6 6 1.5299 -2.1638 1.2493 7 7 3.5050 -0.7218 1.2490 8 6 4.1790 -0.8236 2.4116 9 8 3.5727 -0.9151 3.4581 10 6 5.6860 -0.8247 2.4113 11 7 6.1759 -0.9458 3.7909 12 6 7.6249 -0.7136 3.8573 13 6 7.9038 0.7617 3.7278 14 1 7.0936 1.4496 3.5359 15 6 9.1932 1.2332 3.8542 16 7 10.1799 0.3955 4.0874 17 14 9.5387 3.0621 3.6943 18 1 9.4379 3.7034 5.0299 19 1 10.9064 3.2617 3.1513 20 1 8.5466 3.6747 2.7747 21 6 5.8256 -2.2534 4.3611 22 6 5.9857 -2.2061 5.8820 23 6 7.0440 -3.1154 6.5096 24 6 5.5587 -3.4422 6.6761 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.8933 -2.6776 0.3594 33 1 1.8929 -2.6775 2.1395 34 1 0.4400 -2.1638 1.2493 35 1 3.9898 -0.6489 0.4120 36 1 6.0499 0.1062 1.9765 37 1 6.0486 -1.6671 1.8221 38 1 8.0071 -1.0731 4.8127 39 1 8.1163 -1.2490 3.0448 40 1 11.0871 0.7273 4.1760 41 1 4.7920 -2.4934 4.1119 42 1 6.4852 -3.0176 3.9500 43 1 5.8224 -1.2314 6.3418 44 1 7.6266 -3.7470 5.8390 45 1 7.5775 -2.7389 7.3825 46 1 5.1148 -3.2807 7.6585 47 1 5.1641 -4.2892 6.1151 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081043840.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:45 Heat of formation + Delta-G solvation = -22.368044 kcal Electronic energy + Delta-G solvation = -23082.347930 eV Core-core repulsion = 19879.543864 eV Total energy + Delta-G solvation = -3202.804066 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.71311 -37.73786 -36.77719 -35.00812 -33.10321 -32.43110 -30.14155 -27.94252 -27.54105 -26.82809 -24.24885 -23.32986 -21.86279 -21.20455 -20.32148 -19.89579 -19.39402 -16.68325 -16.46529 -16.24706 -15.41010 -14.72311 -14.62378 -14.48388 -14.40057 -13.89528 -13.62250 -13.48446 -13.31706 -12.97204 -12.54690 -12.35500 -12.18319 -12.16562 -11.82956 -11.63868 -11.28999 -11.22269 -11.15650 -11.05556 -10.96710 -10.74081 -10.66810 -10.61248 -10.58525 -9.96143 -9.74501 -9.43753 -9.25218 -8.92303 -8.79365 -8.38491 -7.20625 -5.99327 -4.00484 3.12833 3.33797 3.39413 3.39986 3.43401 4.36166 4.45976 4.51035 4.73044 4.85513 4.93155 5.22880 5.28340 5.32183 5.35558 5.39961 5.45123 5.48985 5.50235 5.65883 5.68690 5.69459 5.73192 5.85747 5.89495 5.91454 6.03760 6.08374 6.10985 6.15971 6.17188 6.26705 6.29876 6.36497 6.51155 6.59983 6.74922 6.94386 7.25781 7.38249 7.76271 7.85249 8.15393 8.23468 8.56848 8.70439 9.07169 9.63479 11.10963 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.012397 B = 0.005013 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2258.058534 B = 5584.194609 C = 7488.210614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.103 4.103 3 C -0.148 4.148 4 C 0.147 3.853 5 H 0.086 0.914 6 C -0.164 4.164 7 N -0.736 5.736 8 C 0.514 3.486 9 O -0.521 6.521 10 C 0.046 3.954 11 N -0.515 5.515 12 C 0.193 3.807 13 C -0.505 4.505 14 H 0.062 0.938 15 C 0.056 3.944 16 N -0.898 5.898 17 Si 0.896 3.104 18 H -0.281 1.281 19 H -0.288 1.288 20 H -0.274 1.274 21 C 0.087 3.913 22 C -0.119 4.119 23 C -0.182 4.182 24 C -0.189 4.189 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.073 0.927 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.053 0.947 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.396 0.604 36 H 0.110 0.890 37 H 0.047 0.953 38 H 0.044 0.956 39 H -0.012 1.012 40 H 0.260 0.740 41 H 0.076 0.924 42 H 0.017 0.983 43 H 0.111 0.889 44 H 0.088 0.912 45 H 0.089 0.911 46 H 0.087 0.913 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.432 -4.714 -8.042 18.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.206 4.206 4 C 0.042 3.958 5 H 0.104 0.896 6 C -0.222 4.222 7 N -0.390 5.390 8 C 0.301 3.699 9 O -0.396 6.396 10 C -0.086 4.086 11 N -0.240 5.240 12 C 0.068 3.932 13 C -0.544 4.544 14 H 0.080 0.920 15 C -0.145 4.145 16 N -0.538 5.538 17 Si 0.724 3.276 18 H -0.207 1.207 19 H -0.214 1.214 20 H -0.199 1.199 21 C -0.042 4.042 22 C -0.138 4.138 23 C -0.219 4.219 24 C -0.226 4.226 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.091 0.909 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.230 0.770 36 H 0.127 0.873 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.005 0.995 40 H 0.070 0.930 41 H 0.094 0.906 42 H 0.035 0.965 43 H 0.129 0.871 44 H 0.106 0.894 45 H 0.107 0.893 46 H 0.105 0.895 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -15.887 -4.420 -6.940 17.892 hybrid contribution 1.053 0.402 -0.967 1.485 sum -14.835 -4.018 -7.907 17.284 Atomic orbital electron populations 1.21857 0.94459 1.02058 1.02030 1.21386 0.96358 0.96723 0.97704 1.21839 1.01644 0.95347 1.01735 1.20904 0.80380 0.95835 0.98667 0.89610 1.22233 1.01041 0.96732 1.02225 1.46151 1.06487 1.76913 1.09436 1.21086 0.90713 0.74997 0.83119 1.90646 1.70215 1.47570 1.31155 1.21871 0.90056 1.03216 0.93467 1.61782 1.18633 1.28565 1.15012 1.19823 0.79484 0.96815 0.97078 1.21178 0.92683 0.92440 1.48060 0.92028 1.24963 0.96213 0.97776 0.95533 1.69961 0.99912 1.34175 1.49730 0.86540 0.77269 0.85483 0.78343 1.20669 1.21408 1.19945 1.21666 0.99901 0.90210 0.92392 1.22154 1.01852 0.95075 0.94689 1.22974 0.91335 1.04201 1.03384 1.22899 0.98035 1.00212 1.01498 0.92395 0.92501 0.92192 0.90909 0.92759 0.92507 0.92157 0.92767 0.92098 0.91757 0.77004 0.87250 0.93545 0.93819 0.99463 0.93003 0.90608 0.96526 0.87103 0.89394 0.89267 0.89451 0.89684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 8.84 37.16 0.33 -0.77 16 2 C -0.10 -0.89 2.55 -90.62 -0.23 -1.12 16 3 C -0.15 -1.38 9.04 37.16 0.34 -1.04 16 4 C 0.15 1.66 2.16 -67.92 -0.15 1.51 16 5 H 0.09 1.17 7.58 -51.93 -0.39 0.78 16 6 C -0.16 -1.71 9.13 37.16 0.34 -1.37 16 7 N -0.74 -9.28 4.38 -53.80 -0.24 -9.52 16 8 C 0.51 8.75 7.36 -10.99 -0.08 8.67 16 9 O -0.52 -10.62 14.14 5.55 0.08 -10.54 16 10 C 0.05 0.85 5.27 -4.98 -0.03 0.82 16 11 N -0.52 -11.42 4.12 -237.52 -0.98 -12.40 16 12 C 0.19 4.98 4.59 -4.97 -0.02 4.95 16 13 C -0.50 -14.07 8.61 -34.44 -0.30 -14.37 16 14 H 0.06 1.72 7.66 -52.48 -0.40 1.32 16 15 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 16 N -0.90 -26.46 13.29 55.43 0.74 -25.72 16 17 Si 0.90 21.61 29.54 -169.99 -5.02 16.58 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 21 C 0.09 1.73 4.80 -3.83 -0.02 1.71 16 22 C -0.12 -2.29 4.97 -90.63 -0.45 -2.74 16 23 C -0.18 -3.16 9.99 -26.74 -0.27 -3.43 16 24 C -0.19 -2.98 10.25 -26.73 -0.27 -3.25 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.41 6.43 -51.93 -0.33 0.08 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.60 7.45 -51.93 -0.39 0.21 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.56 6.43 -51.93 -0.33 0.23 16 35 H 0.40 4.05 8.39 -40.82 -0.34 3.71 16 36 H 0.11 2.09 7.32 -51.93 -0.38 1.71 16 37 H 0.05 0.79 8.12 -51.93 -0.42 0.37 16 38 H 0.04 1.22 6.97 -51.93 -0.36 0.86 16 39 H -0.01 -0.34 8.00 -51.93 -0.42 -0.75 16 40 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 41 H 0.08 1.50 5.81 -51.93 -0.30 1.20 16 42 H 0.02 0.33 7.79 -51.93 -0.40 -0.08 16 43 H 0.11 2.35 8.14 -51.93 -0.42 1.93 16 44 H 0.09 1.51 8.03 -51.93 -0.42 1.10 16 45 H 0.09 1.51 8.14 -51.92 -0.42 1.08 16 46 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 47 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 373.65 15.07 5.63 5.63 Total: -1.00 -31.37 373.65 -9.38 -40.74 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -8.68 Total: 4.16 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: -0.91 Total: -8.94 kcal Atomic # 7 Polarization: -47.16 SS G_CDS: -0.48 Total: -47.64 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.08 Total: -10.54 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.37 -9.38 -40.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081043840.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.375 kcal (2) G-P(sol) polarization free energy of solvation -31.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds