Wall clock time and date at job start Tue Mar 31 2020 05:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47167 * 2 1 4 4 C 1.53010 * 109.47024 * 119.99935 * 2 1 3 5 5 H 1.09001 * 109.47095 * 300.00271 * 4 2 1 6 6 C 1.53002 * 109.47095 * 60.00021 * 4 2 1 7 7 N 1.46501 * 109.47100 * 179.97438 * 4 2 1 8 8 C 1.34769 * 120.00145 * 154.99685 * 7 4 2 9 9 O 1.21292 * 119.99735 * 0.02562 * 8 7 4 10 10 C 1.50697 * 120.00301 * 179.97438 * 8 7 4 11 11 N 1.46898 * 109.47146 * 180.02562 * 10 8 7 12 12 C 1.46903 * 111.00051 * 190.00283 * 11 10 8 13 13 C 1.50702 * 109.47436 * 75.57831 * 12 11 10 14 14 H 1.08004 * 119.99637 * 355.53535 * 13 12 11 15 15 C 1.37876 * 119.99978 * 175.52984 * 13 12 11 16 16 N 1.31515 * 120.00015 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99642 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.46873 * 90.00535 * 17 15 13 19 19 H 1.48502 * 109.46872 * 210.00098 * 17 15 13 20 20 H 1.48497 * 109.47287 * 330.00329 * 17 15 13 21 21 C 1.46894 * 111.00463 * 66.04684 * 11 10 8 22 22 C 1.53004 * 109.47643 * 195.92018 * 21 11 10 23 23 C 1.52990 * 117.50030 * 243.78745 * 22 21 11 24 24 C 1.52996 * 117.49982 * 175.16241 * 22 21 11 25 25 H 1.09001 * 109.47406 * 299.99985 * 1 2 3 26 26 H 1.08997 * 109.46930 * 60.00083 * 1 2 3 27 27 H 1.09005 * 109.47024 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47406 * 240.00015 * 2 1 3 29 29 H 1.08997 * 109.47128 * 299.99796 * 3 2 1 30 30 H 1.08995 * 109.47014 * 60.00159 * 3 2 1 31 31 H 1.09006 * 109.46904 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.46945 * 60.00158 * 6 4 2 33 33 H 1.08997 * 109.47128 * 180.02562 * 6 4 2 34 34 H 1.08997 * 109.47119 * 300.00021 * 6 4 2 35 35 H 0.97004 * 119.99655 * 335.00292 * 7 4 2 36 36 H 1.08996 * 109.47000 * 60.00059 * 10 8 7 37 37 H 1.09003 * 109.47100 * 300.00010 * 10 8 7 38 38 H 1.09002 * 109.47380 * 195.58437 * 12 11 10 39 39 H 1.09006 * 109.47077 * 315.58123 * 12 11 10 40 40 H 0.97003 * 119.99759 * 179.97438 * 16 15 13 41 41 H 1.08995 * 109.47071 * 315.91974 * 21 11 10 42 42 H 1.08998 * 109.47424 * 75.91786 * 21 11 10 43 43 H 1.09005 * 115.54524 * 29.49753 * 22 21 11 44 44 H 1.08998 * 117.50253 * 0.02562 * 23 22 21 45 45 H 1.09007 * 117.50229 * 145.01738 * 23 22 21 46 46 H 1.09005 * 117.49744 * 214.98087 * 24 22 21 47 47 H 1.08992 * 117.49949 * 0.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6766 -0.2075 2.1393 6 6 1.5299 -2.1638 1.2493 7 7 3.5050 -0.7218 1.2490 8 6 4.1790 -0.8236 2.4116 9 8 3.5727 -0.9151 3.4581 10 6 5.6860 -0.8247 2.4113 11 7 6.1759 -0.9458 3.7909 12 6 7.6249 -0.7136 3.8573 13 6 7.9038 0.7617 3.7278 14 1 7.0936 1.4496 3.5359 15 6 9.1932 1.2332 3.8542 16 7 10.1799 0.3955 4.0874 17 14 9.5387 3.0621 3.6943 18 1 9.4379 3.7034 5.0299 19 1 10.9064 3.2617 3.1513 20 1 8.5466 3.6747 2.7747 21 6 5.8256 -2.2534 4.3611 22 6 5.9857 -2.2061 5.8820 23 6 7.0440 -3.1154 6.5096 24 6 5.5587 -3.4422 6.6761 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.8933 -2.6776 0.3594 33 1 1.8929 -2.6775 2.1395 34 1 0.4400 -2.1638 1.2493 35 1 3.9898 -0.6489 0.4120 36 1 6.0499 0.1062 1.9765 37 1 6.0486 -1.6671 1.8221 38 1 8.0071 -1.0731 4.8127 39 1 8.1163 -1.2490 3.0448 40 1 11.0871 0.7273 4.1760 41 1 4.7920 -2.4934 4.1119 42 1 6.4852 -3.0176 3.9500 43 1 5.8224 -1.2314 6.3418 44 1 7.6266 -3.7470 5.8390 45 1 7.5775 -2.7389 7.3825 46 1 5.1148 -3.2807 7.6585 47 1 5.1641 -4.2892 6.1151 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081043840.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:45 Heat of formation + Delta-G solvation = -41.798994 kcal Electronic energy + Delta-G solvation = -23083.190519 eV Core-core repulsion = 19879.543864 eV Total energy + Delta-G solvation = -3203.646655 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.02751 -39.11760 -37.94380 -36.65603 -34.53937 -34.18695 -31.12462 -29.64642 -29.11540 -27.67160 -25.98100 -24.48188 -23.19780 -22.90240 -21.40632 -21.21088 -20.78618 -18.50830 -18.03632 -17.46159 -16.90991 -16.50530 -15.99432 -15.80636 -15.47292 -15.27464 -14.97212 -14.73034 -14.47056 -14.27463 -14.10559 -13.60086 -13.37027 -13.22425 -13.10302 -13.01598 -12.81163 -12.65163 -12.51779 -12.40577 -12.33703 -12.25670 -11.94619 -11.92336 -11.73250 -11.42818 -11.41612 -11.09190 -10.85716 -10.60123 -10.40479 -9.97271 -8.98049 -8.16053 -6.25662 1.41693 1.43753 1.53912 1.74450 2.19552 2.42758 2.94913 3.15713 3.32926 3.70191 3.92834 3.98728 4.01038 4.07939 4.14099 4.20466 4.38324 4.46362 4.50359 4.56480 4.59971 4.62927 4.72284 4.76544 4.82480 4.85688 4.88467 4.97864 5.03246 5.04186 5.07419 5.17552 5.20031 5.25631 5.29472 5.31950 5.41676 5.44118 5.48882 5.67336 5.69880 6.10785 6.31550 6.60191 6.71189 6.89001 7.39498 7.43511 8.94005 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.012397 B = 0.005013 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2258.058534 B = 5584.194609 C = 7488.210614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 C -0.149 4.149 4 C 0.145 3.855 5 H 0.059 0.941 6 C -0.158 4.158 7 N -0.716 5.716 8 C 0.520 3.480 9 O -0.559 6.559 10 C 0.044 3.956 11 N -0.531 5.531 12 C 0.212 3.788 13 C -0.520 4.520 14 H 0.057 0.943 15 C 0.007 3.993 16 N -0.931 5.931 17 Si 0.964 3.036 18 H -0.279 1.279 19 H -0.280 1.280 20 H -0.264 1.264 21 C 0.095 3.905 22 C -0.152 4.152 23 C -0.184 4.184 24 C -0.154 4.154 25 H 0.049 0.951 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.091 0.909 29 H 0.070 0.930 30 H 0.041 0.959 31 H 0.050 0.950 32 H 0.069 0.931 33 H 0.033 0.967 34 H 0.083 0.917 35 H 0.411 0.589 36 H 0.102 0.898 37 H 0.064 0.936 38 H 0.016 0.984 39 H -0.033 1.033 40 H 0.264 0.736 41 H 0.079 0.921 42 H 0.017 0.983 43 H 0.083 0.917 44 H 0.087 0.913 45 H 0.090 0.910 46 H 0.106 0.894 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.822 -4.718 -9.506 19.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 C -0.207 4.207 4 C 0.041 3.959 5 H 0.077 0.923 6 C -0.216 4.216 7 N -0.369 5.369 8 C 0.306 3.694 9 O -0.437 6.437 10 C -0.088 4.088 11 N -0.255 5.255 12 C 0.087 3.913 13 C -0.558 4.558 14 H 0.075 0.925 15 C -0.191 4.191 16 N -0.571 5.571 17 Si 0.789 3.211 18 H -0.205 1.205 19 H -0.206 1.206 20 H -0.188 1.188 21 C -0.033 4.033 22 C -0.171 4.171 23 C -0.221 4.221 24 C -0.192 4.192 25 H 0.068 0.932 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.110 0.890 29 H 0.089 0.911 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.053 0.947 34 H 0.102 0.898 35 H 0.247 0.753 36 H 0.120 0.880 37 H 0.082 0.918 38 H 0.034 0.966 39 H -0.015 1.015 40 H 0.072 0.928 41 H 0.097 0.903 42 H 0.035 0.965 43 H 0.102 0.898 44 H 0.106 0.894 45 H 0.108 0.892 46 H 0.125 0.875 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -17.306 -4.428 -8.456 19.763 hybrid contribution 1.442 0.384 -0.540 1.587 sum -15.864 -4.044 -8.996 18.680 Atomic orbital electron populations 1.21858 0.93200 1.02821 1.02376 1.21354 0.97283 0.95943 0.96694 1.21855 1.01030 0.95930 1.01868 1.21057 0.78947 0.96797 0.99140 0.92276 1.22180 1.02267 0.95540 1.01644 1.45976 1.07390 1.74895 1.08684 1.20700 0.89887 0.75007 0.83775 1.90632 1.70562 1.49756 1.32704 1.21885 0.91538 1.03516 0.91836 1.61674 1.16147 1.30283 1.17395 1.19414 0.81650 0.95604 0.94673 1.21428 0.92855 0.93357 1.48197 0.92524 1.25802 0.95911 1.02464 0.94949 1.70078 1.00349 1.36314 1.50400 0.85474 0.77488 0.79750 0.78429 1.20470 1.20580 1.18843 1.21611 0.99771 0.89029 0.92847 1.22077 1.05111 0.95375 0.94527 1.22997 0.92387 1.03606 1.03159 1.22992 0.96332 0.98201 1.01642 0.93174 0.91088 0.91234 0.89037 0.91053 0.93983 0.93102 0.91157 0.94749 0.89830 0.75292 0.88038 0.91779 0.96565 1.01528 0.92763 0.90297 0.96515 0.89836 0.89432 0.89158 0.87546 0.87875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 8.84 71.98 0.64 -1.15 16 2 C -0.09 -1.41 2.55 -10.79 -0.03 -1.44 16 3 C -0.15 -2.54 9.04 71.98 0.65 -1.89 16 4 C 0.14 3.09 2.16 45.00 0.10 3.19 16 5 H 0.06 1.62 7.58 -2.39 -0.02 1.60 16 6 C -0.16 -3.02 9.13 71.98 0.66 -2.36 16 7 N -0.72 -17.43 4.38 -442.51 -1.94 -19.37 16 8 C 0.52 17.79 7.36 87.66 0.64 18.44 16 9 O -0.56 -23.21 14.14 -3.07 -0.04 -23.25 16 10 C 0.04 1.65 5.27 85.56 0.45 2.10 16 11 N -0.53 -24.28 4.12 -905.38 -3.73 -28.01 16 12 C 0.21 11.40 4.59 85.56 0.39 11.80 16 13 C -0.52 -29.66 8.61 25.60 0.22 -29.44 16 14 H 0.06 3.22 7.66 -2.91 -0.02 3.20 16 15 C 0.01 0.40 5.46 84.65 0.46 0.86 16 16 N -0.93 -55.76 13.29 21.45 0.28 -55.48 16 17 Si 0.96 44.50 29.54 68.60 2.03 46.53 16 18 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 19 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 20 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 21 C 0.10 3.89 4.80 86.31 0.41 4.30 16 22 C -0.15 -5.99 4.97 -10.80 -0.05 -6.04 16 23 C -0.18 -6.43 9.99 30.59 0.31 -6.13 16 24 C -0.15 -4.67 10.25 30.59 0.31 -4.35 16 25 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.07 0.74 6.43 -2.38 -0.02 0.72 16 28 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.05 0.95 7.45 -2.38 -0.02 0.93 16 32 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.08 1.27 6.43 -2.39 -0.02 1.26 16 35 H 0.41 7.72 8.39 -92.71 -0.78 6.94 16 36 H 0.10 3.96 7.32 -2.39 -0.02 3.95 16 37 H 0.06 2.18 8.12 -2.39 -0.02 2.16 16 38 H 0.02 0.95 6.97 -2.39 -0.02 0.93 16 39 H -0.03 -1.86 8.00 -2.38 -0.02 -1.88 16 40 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 41 H 0.08 3.16 5.81 -2.39 -0.01 3.14 16 42 H 0.02 0.67 7.79 -2.39 -0.02 0.65 16 43 H 0.08 3.72 8.14 -2.38 -0.02 3.70 16 44 H 0.09 3.03 8.03 -2.39 -0.02 3.01 16 45 H 0.09 3.08 8.14 -2.38 -0.02 3.06 16 46 H 0.11 2.82 8.14 -2.38 -0.02 2.80 16 47 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 Total: -1.00 -69.26 373.65 1.91 -67.35 By element: Atomic # 1 Polarization: 24.21 SS G_CDS: 0.15 Total: 24.35 kcal Atomic # 6 Polarization: -17.28 SS G_CDS: 5.16 Total: -12.12 kcal Atomic # 7 Polarization: -97.48 SS G_CDS: -5.38 Total: -102.86 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: -0.04 Total: -23.25 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -69.26 1.91 -67.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081043840.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.554 kcal (2) G-P(sol) polarization free energy of solvation -69.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds