Wall clock time and date at job start Tue Mar 31 2020 05:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46812 * 2 1 4 4 C 1.53002 * 109.46849 * 119.99339 * 2 1 3 5 5 H 1.08998 * 109.47149 * 60.00710 * 4 2 1 6 6 C 1.53000 * 109.47416 * 300.00055 * 4 2 1 7 7 N 1.46508 * 109.46871 * 180.02562 * 4 2 1 8 8 C 1.34776 * 119.99849 * 205.00307 * 7 4 2 9 9 O 1.21278 * 120.00199 * 0.02562 * 8 7 4 10 10 C 1.50702 * 119.99828 * 179.97438 * 8 7 4 11 11 N 1.46892 * 109.47326 * 179.97438 * 10 8 7 12 12 C 1.46900 * 111.00289 * 189.99976 * 11 10 8 13 13 C 1.50703 * 109.47169 * 75.58646 * 12 11 10 14 14 H 1.08002 * 119.99658 * 355.53019 * 13 12 11 15 15 C 1.37873 * 120.00134 * 175.53508 * 13 12 11 16 16 N 1.31513 * 119.99873 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99772 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47394 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47043 * 119.99851 * 17 15 13 20 20 H 1.48494 * 109.47173 * 239.99698 * 17 15 13 21 21 C 1.46900 * 111.00094 * 66.04324 * 11 10 8 22 22 C 1.52998 * 109.47345 * 195.92225 * 21 11 10 23 23 C 1.53007 * 117.49755 * 243.78872 * 22 21 11 24 24 C 1.53004 * 60.00043 * 252.51050 * 23 22 21 25 25 H 1.08994 * 109.47296 * 60.01024 * 1 2 3 26 26 H 1.09002 * 109.47485 * 299.99837 * 1 2 3 27 27 H 1.09009 * 109.46864 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47170 * 239.99499 * 2 1 3 29 29 H 1.09001 * 109.46718 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.46381 * 299.99462 * 3 2 1 31 31 H 1.08998 * 109.47255 * 59.99449 * 3 2 1 32 32 H 1.09005 * 109.46820 * 60.00596 * 6 4 2 33 33 H 1.09004 * 109.47074 * 179.97438 * 6 4 2 34 34 H 1.08992 * 109.47104 * 300.00264 * 6 4 2 35 35 H 0.96999 * 119.99917 * 25.00174 * 7 4 2 36 36 H 1.09000 * 109.47114 * 300.00525 * 10 8 7 37 37 H 1.08999 * 109.46988 * 59.99572 * 10 8 7 38 38 H 1.09001 * 109.47211 * 195.58514 * 12 11 10 39 39 H 1.08994 * 109.47083 * 315.58630 * 12 11 10 40 40 H 0.97007 * 119.99313 * 180.02562 * 16 15 13 41 41 H 1.09001 * 109.47408 * 315.92521 * 21 11 10 42 42 H 1.09001 * 109.46955 * 75.92250 * 21 11 10 43 43 H 1.08994 * 115.55042 * 29.50044 * 22 21 11 44 44 H 1.08989 * 117.49876 * 0.02562 * 23 22 21 45 45 H 1.09001 * 117.49516 * 145.02091 * 23 22 21 46 46 H 1.08996 * 117.50178 * 252.51460 * 24 23 22 47 47 H 1.08996 * 117.49471 * 107.48890 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2494 5 1 1.6767 -1.7488 1.2494 6 6 1.5300 0.0002 2.4985 7 7 3.5050 -0.7206 1.2497 8 6 4.1791 -1.6765 1.9192 9 8 3.5729 -2.5374 2.5211 10 6 5.6861 -1.6763 1.9191 11 7 6.1760 -2.8102 2.7140 12 6 7.6249 -2.7111 2.9353 13 6 7.9026 -1.6629 3.9819 14 1 7.0919 -1.0739 4.3847 15 6 9.1917 -1.4557 4.4250 16 7 10.1788 -2.1732 3.9347 17 14 9.5360 -0.1559 5.7217 18 1 8.2646 0.5076 6.1073 19 1 10.1414 -0.7970 6.9167 20 1 10.4755 0.8544 5.1726 21 6 5.8267 -4.0881 2.0793 22 6 5.9867 -5.2221 3.0939 23 6 7.0458 -6.2871 2.8020 24 6 5.5606 -6.6255 2.6580 25 1 -0.3633 0.5136 -0.8900 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9562 -0.8901 31 1 1.6765 1.9564 0.8899 32 1 0.4399 0.0001 2.4985 33 1 1.8929 -0.5138 3.3886 34 1 1.8932 1.0278 2.4984 35 1 3.9899 -0.0323 0.7680 36 1 6.0494 -1.7659 0.8953 37 1 6.0493 -0.7448 2.3531 38 1 8.0073 -3.6737 3.2748 39 1 8.1166 -2.4331 2.0032 40 1 11.0857 -2.0276 4.2468 41 1 4.7932 -4.0521 1.7347 42 1 6.4869 -4.2646 1.2302 43 1 5.8226 -4.9473 4.1358 44 1 7.6288 -6.1796 1.8874 45 1 7.5789 -6.7129 3.6520 46 1 5.1166 -7.2739 3.4132 47 1 5.1664 -6.7408 1.6484 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081043841.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:48 Heat of formation + Delta-G solvation = -19.696343 kcal Electronic energy + Delta-G solvation = -23054.092514 eV Core-core repulsion = 19851.404301 eV Total energy + Delta-G solvation = -3202.688213 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.75241 -37.81920 -36.86544 -35.01449 -33.07566 -32.43189 -29.68963 -27.77494 -27.54538 -27.24776 -24.52582 -23.66437 -21.86782 -21.24426 -20.02924 -19.58521 -19.32102 -16.84126 -16.42039 -15.98691 -15.55844 -15.15969 -14.84675 -14.53453 -14.03698 -14.02749 -13.68326 -13.44831 -13.17278 -12.91735 -12.82768 -12.30158 -12.20190 -12.14352 -11.83619 -11.54006 -11.31717 -11.29263 -11.18707 -11.04234 -10.80276 -10.71556 -10.66276 -10.63530 -10.59935 -9.96258 -9.74351 -9.42306 -9.23801 -8.97582 -8.76241 -8.39137 -7.20509 -5.99522 -4.00555 3.12645 3.32091 3.39836 3.40176 3.45367 4.36224 4.46050 4.54450 4.65757 4.81878 4.91682 5.19126 5.28433 5.29272 5.35812 5.40063 5.40672 5.44477 5.50319 5.63652 5.67849 5.68842 5.73071 5.82791 5.90856 5.93197 5.99112 6.03918 6.08140 6.13800 6.16755 6.29713 6.36397 6.37177 6.51186 6.60102 6.75412 6.94519 7.25774 7.38287 7.76061 7.85552 8.15288 8.23436 8.56808 8.70253 9.07476 9.63496 11.10808 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.012781 B = 0.004788 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.280748 B = 5846.404785 C = 7533.511403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.104 4.104 3 C -0.152 4.152 4 C 0.148 3.852 5 H 0.084 0.916 6 C -0.167 4.167 7 N -0.738 5.738 8 C 0.513 3.487 9 O -0.521 6.521 10 C 0.045 3.955 11 N -0.515 5.515 12 C 0.192 3.808 13 C -0.504 4.504 14 H 0.062 0.938 15 C 0.056 3.944 16 N -0.898 5.898 17 Si 0.895 3.105 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.286 1.286 21 C 0.086 3.914 22 C -0.119 4.119 23 C -0.182 4.182 24 C -0.189 4.189 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.056 0.944 28 H 0.074 0.926 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.396 0.604 36 H 0.047 0.953 37 H 0.110 0.890 38 H 0.044 0.956 39 H -0.012 1.012 40 H 0.260 0.740 41 H 0.076 0.924 42 H 0.017 0.983 43 H 0.111 0.889 44 H 0.088 0.912 45 H 0.089 0.911 46 H 0.087 0.913 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.487 3.174 -9.298 18.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.123 4.123 3 C -0.209 4.209 4 C 0.043 3.957 5 H 0.102 0.898 6 C -0.225 4.225 7 N -0.392 5.392 8 C 0.300 3.700 9 O -0.396 6.396 10 C -0.086 4.086 11 N -0.240 5.240 12 C 0.068 3.932 13 C -0.543 4.543 14 H 0.080 0.920 15 C -0.145 4.145 16 N -0.538 5.538 17 Si 0.723 3.277 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.212 1.212 21 C -0.042 4.042 22 C -0.138 4.138 23 C -0.219 4.219 24 C -0.226 4.226 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.092 0.908 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.231 0.769 36 H 0.065 0.935 37 H 0.128 0.872 38 H 0.062 0.938 39 H 0.005 0.995 40 H 0.069 0.931 41 H 0.094 0.906 42 H 0.035 0.965 43 H 0.129 0.871 44 H 0.106 0.894 45 H 0.107 0.893 46 H 0.105 0.895 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -15.946 2.518 -8.368 18.183 hybrid contribution 1.074 1.017 -0.292 1.507 sum -14.872 3.535 -8.660 17.569 Atomic orbital electron populations 1.21856 0.94420 1.02076 1.02069 1.21373 0.96409 0.96628 0.97867 1.21925 1.01024 0.95830 1.02144 1.20850 0.80355 1.00237 0.94241 0.89797 1.22278 1.00865 1.00820 0.98521 1.46240 1.06541 1.31531 1.54934 1.21101 0.90740 0.80520 0.77616 1.90641 1.70221 1.36901 1.41809 1.21873 0.90050 0.99298 0.97407 1.61781 1.18664 0.98557 1.44982 1.19827 0.79488 0.98574 0.95348 1.21219 0.92704 1.18620 1.21751 0.91967 1.24964 0.96221 0.96518 0.96813 1.69971 0.99878 1.40394 1.43524 0.86494 0.78189 0.81470 0.81578 1.19706 1.21051 1.21200 1.21672 0.99914 0.89350 0.93264 1.22156 1.01857 0.88565 1.01199 1.22976 0.91330 1.04686 1.02898 1.22901 0.98042 0.99871 1.01829 0.92509 0.92033 0.92477 0.90786 0.92589 0.92574 0.91947 0.91891 0.91902 0.92299 0.76921 0.93543 0.87247 0.93801 0.99456 0.93062 0.90601 0.96508 0.87100 0.89391 0.89265 0.89451 0.89678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 8.84 37.16 0.33 -0.74 16 2 C -0.10 -0.88 2.91 -90.62 -0.26 -1.14 16 3 C -0.15 -1.15 8.67 37.16 0.32 -0.83 16 4 C 0.15 1.68 2.41 -67.92 -0.16 1.52 16 5 H 0.08 1.11 7.58 -51.93 -0.39 0.72 16 6 C -0.17 -1.87 8.78 37.16 0.33 -1.54 16 7 N -0.74 -9.45 5.00 -53.80 -0.27 -9.72 16 8 C 0.51 8.82 7.36 -10.98 -0.08 8.74 16 9 O -0.52 -10.67 14.14 5.56 0.08 -10.59 16 10 C 0.05 0.85 5.27 -4.98 -0.03 0.82 16 11 N -0.52 -11.45 4.12 -237.52 -0.98 -12.43 16 12 C 0.19 4.97 4.59 -4.97 -0.02 4.95 16 13 C -0.50 -14.07 8.60 -34.44 -0.30 -14.37 16 14 H 0.06 1.74 7.66 -52.49 -0.40 1.34 16 15 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 16 N -0.90 -26.47 13.29 55.43 0.74 -25.73 16 17 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 18 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 C 0.09 1.72 4.80 -3.82 -0.02 1.70 16 22 C -0.12 -2.30 4.97 -90.61 -0.45 -2.75 16 23 C -0.18 -3.16 10.00 -26.73 -0.27 -3.43 16 24 C -0.19 -2.98 10.25 -26.73 -0.27 -3.25 16 25 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.43 6.43 -51.93 -0.33 0.10 16 27 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.42 6.50 -51.93 -0.34 0.08 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.48 6.43 -51.93 -0.33 0.14 16 32 H 0.06 0.59 6.43 -51.93 -0.33 0.26 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.06 0.61 6.43 -51.93 -0.33 0.27 16 35 H 0.40 4.16 6.87 -40.82 -0.28 3.88 16 36 H 0.05 0.80 8.12 -51.93 -0.42 0.37 16 37 H 0.11 2.11 7.31 -51.93 -0.38 1.73 16 38 H 0.04 1.22 6.97 -51.93 -0.36 0.86 16 39 H -0.01 -0.33 8.00 -51.93 -0.42 -0.75 16 40 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 41 H 0.08 1.50 5.80 -51.93 -0.30 1.20 16 42 H 0.02 0.33 7.79 -51.93 -0.40 -0.07 16 43 H 0.11 2.35 8.14 -51.93 -0.42 1.93 16 44 H 0.09 1.51 8.03 -51.94 -0.42 1.10 16 45 H 0.09 1.51 8.14 -51.93 -0.42 1.08 16 46 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 47 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 368.24 15.07 5.55 5.55 Total: -1.00 -31.46 368.24 -9.28 -40.74 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -8.39 Total: 4.42 kcal Atomic # 6 Polarization: -7.85 SS G_CDS: -0.98 Total: -8.83 kcal Atomic # 7 Polarization: -47.37 SS G_CDS: -0.51 Total: -47.88 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.08 Total: -10.59 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.46 -9.28 -40.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081043841.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.042 kcal (2) G-P(sol) polarization free energy of solvation -31.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds