Wall clock time and date at job start Tue Mar 31 2020 05:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46812 * 2 1 4 4 C 1.53002 * 109.46849 * 119.99339 * 2 1 3 5 5 H 1.08998 * 109.47149 * 60.00710 * 4 2 1 6 6 C 1.53000 * 109.47416 * 300.00055 * 4 2 1 7 7 N 1.46508 * 109.46871 * 180.02562 * 4 2 1 8 8 C 1.34776 * 119.99849 * 205.00307 * 7 4 2 9 9 O 1.21278 * 120.00199 * 0.02562 * 8 7 4 10 10 C 1.50702 * 119.99828 * 179.97438 * 8 7 4 11 11 N 1.46892 * 109.47326 * 179.97438 * 10 8 7 12 12 C 1.46900 * 111.00289 * 189.99976 * 11 10 8 13 13 C 1.50703 * 109.47169 * 75.58646 * 12 11 10 14 14 H 1.08002 * 119.99658 * 355.53019 * 13 12 11 15 15 C 1.37873 * 120.00134 * 175.53508 * 13 12 11 16 16 N 1.31513 * 119.99873 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99772 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47394 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47043 * 119.99851 * 17 15 13 20 20 H 1.48494 * 109.47173 * 239.99698 * 17 15 13 21 21 C 1.46900 * 111.00094 * 66.04324 * 11 10 8 22 22 C 1.52998 * 109.47345 * 195.92225 * 21 11 10 23 23 C 1.53007 * 117.49755 * 243.78872 * 22 21 11 24 24 C 1.53004 * 60.00043 * 252.51050 * 23 22 21 25 25 H 1.08994 * 109.47296 * 60.01024 * 1 2 3 26 26 H 1.09002 * 109.47485 * 299.99837 * 1 2 3 27 27 H 1.09009 * 109.46864 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47170 * 239.99499 * 2 1 3 29 29 H 1.09001 * 109.46718 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.46381 * 299.99462 * 3 2 1 31 31 H 1.08998 * 109.47255 * 59.99449 * 3 2 1 32 32 H 1.09005 * 109.46820 * 60.00596 * 6 4 2 33 33 H 1.09004 * 109.47074 * 179.97438 * 6 4 2 34 34 H 1.08992 * 109.47104 * 300.00264 * 6 4 2 35 35 H 0.96999 * 119.99917 * 25.00174 * 7 4 2 36 36 H 1.09000 * 109.47114 * 300.00525 * 10 8 7 37 37 H 1.08999 * 109.46988 * 59.99572 * 10 8 7 38 38 H 1.09001 * 109.47211 * 195.58514 * 12 11 10 39 39 H 1.08994 * 109.47083 * 315.58630 * 12 11 10 40 40 H 0.97007 * 119.99313 * 180.02562 * 16 15 13 41 41 H 1.09001 * 109.47408 * 315.92521 * 21 11 10 42 42 H 1.09001 * 109.46955 * 75.92250 * 21 11 10 43 43 H 1.08994 * 115.55042 * 29.50044 * 22 21 11 44 44 H 1.08989 * 117.49876 * 0.02562 * 23 22 21 45 45 H 1.09001 * 117.49516 * 145.02091 * 23 22 21 46 46 H 1.08996 * 117.50178 * 252.51460 * 24 23 22 47 47 H 1.08996 * 117.49471 * 107.48890 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2494 5 1 1.6767 -1.7488 1.2494 6 6 1.5300 0.0002 2.4985 7 7 3.5050 -0.7206 1.2497 8 6 4.1791 -1.6765 1.9192 9 8 3.5729 -2.5374 2.5211 10 6 5.6861 -1.6763 1.9191 11 7 6.1760 -2.8102 2.7140 12 6 7.6249 -2.7111 2.9353 13 6 7.9026 -1.6629 3.9819 14 1 7.0919 -1.0739 4.3847 15 6 9.1917 -1.4557 4.4250 16 7 10.1788 -2.1732 3.9347 17 14 9.5360 -0.1559 5.7217 18 1 8.2646 0.5076 6.1073 19 1 10.1414 -0.7970 6.9167 20 1 10.4755 0.8544 5.1726 21 6 5.8267 -4.0881 2.0793 22 6 5.9867 -5.2221 3.0939 23 6 7.0458 -6.2871 2.8020 24 6 5.5606 -6.6255 2.6580 25 1 -0.3633 0.5136 -0.8900 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9562 -0.8901 31 1 1.6765 1.9564 0.8899 32 1 0.4399 0.0001 2.4985 33 1 1.8929 -0.5138 3.3886 34 1 1.8932 1.0278 2.4984 35 1 3.9899 -0.0323 0.7680 36 1 6.0494 -1.7659 0.8953 37 1 6.0493 -0.7448 2.3531 38 1 8.0073 -3.6737 3.2748 39 1 8.1166 -2.4331 2.0032 40 1 11.0857 -2.0276 4.2468 41 1 4.7932 -4.0521 1.7347 42 1 6.4869 -4.2646 1.2302 43 1 5.8226 -4.9473 4.1358 44 1 7.6288 -6.1796 1.8874 45 1 7.5789 -6.7129 3.6520 46 1 5.1166 -7.2739 3.4132 47 1 5.1664 -6.7408 1.6484 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081043841.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:47 Heat of formation + Delta-G solvation = -39.437637 kcal Electronic energy + Delta-G solvation = -23054.948561 eV Core-core repulsion = 19851.404301 eV Total energy + Delta-G solvation = -3203.544259 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.06038 -39.16575 -38.06294 -36.66713 -34.54259 -34.17401 -30.73565 -29.59115 -28.98019 -27.97042 -26.07069 -24.97980 -23.20912 -22.96463 -21.39088 -21.06407 -20.29119 -18.51294 -18.15945 -17.20081 -16.96365 -16.44436 -16.22373 -16.12584 -15.53556 -15.30292 -15.12844 -14.52626 -14.48115 -14.12877 -13.94021 -13.83227 -13.46716 -13.21555 -13.08450 -13.02554 -12.82483 -12.63184 -12.51651 -12.35109 -12.28825 -12.25837 -11.95399 -11.92263 -11.53523 -11.46737 -11.39895 -11.08799 -10.85321 -10.61305 -10.43276 -9.98822 -8.98166 -8.16368 -6.25874 1.40749 1.42886 1.55470 1.72981 2.18772 2.42624 2.94906 3.15440 3.32663 3.75016 3.91857 3.94232 4.01194 4.08019 4.14173 4.20476 4.37826 4.46533 4.48200 4.50841 4.58537 4.61816 4.72012 4.76721 4.83744 4.88063 4.88471 5.02934 5.03505 5.04475 5.06895 5.18189 5.19909 5.25771 5.27415 5.29461 5.42171 5.44706 5.57210 5.65554 5.69858 6.10629 6.31025 6.59628 6.69757 6.89045 7.37865 7.43335 8.93883 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.012781 B = 0.004788 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.280748 B = 5846.404785 C = 7533.511403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 C -0.152 4.152 4 C 0.146 3.854 5 H 0.064 0.936 6 C -0.162 4.162 7 N -0.718 5.718 8 C 0.519 3.481 9 O -0.558 6.558 10 C 0.043 3.957 11 N -0.531 5.531 12 C 0.212 3.788 13 C -0.519 4.519 14 H 0.056 0.944 15 C 0.007 3.993 16 N -0.931 5.931 17 Si 0.964 3.036 18 H -0.267 1.267 19 H -0.282 1.282 20 H -0.275 1.275 21 C 0.095 3.905 22 C -0.152 4.152 23 C -0.184 4.184 24 C -0.154 4.154 25 H 0.071 0.929 26 H 0.064 0.936 27 H 0.053 0.947 28 H 0.076 0.924 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.083 0.917 33 H 0.028 0.972 34 H 0.070 0.930 35 H 0.410 0.590 36 H 0.065 0.935 37 H 0.102 0.898 38 H 0.017 0.983 39 H -0.033 1.033 40 H 0.263 0.737 41 H 0.079 0.921 42 H 0.017 0.983 43 H 0.083 0.917 44 H 0.087 0.913 45 H 0.090 0.910 46 H 0.106 0.894 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.802 4.306 -10.079 20.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 C -0.209 4.209 4 C 0.042 3.958 5 H 0.083 0.917 6 C -0.220 4.220 7 N -0.373 5.373 8 C 0.305 3.695 9 O -0.436 6.436 10 C -0.088 4.088 11 N -0.255 5.255 12 C 0.086 3.914 13 C -0.558 4.558 14 H 0.075 0.925 15 C -0.192 4.192 16 N -0.571 5.571 17 Si 0.789 3.211 18 H -0.191 1.191 19 H -0.208 1.208 20 H -0.201 1.201 21 C -0.033 4.033 22 C -0.171 4.171 23 C -0.221 4.221 24 C -0.192 4.192 25 H 0.090 0.910 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.094 0.906 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.102 0.898 33 H 0.047 0.953 34 H 0.088 0.912 35 H 0.247 0.753 36 H 0.083 0.917 37 H 0.120 0.880 38 H 0.035 0.965 39 H -0.015 1.015 40 H 0.072 0.928 41 H 0.097 0.903 42 H 0.035 0.965 43 H 0.102 0.898 44 H 0.106 0.894 45 H 0.108 0.892 46 H 0.125 0.875 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -17.286 3.688 -9.185 19.920 hybrid contribution 1.437 0.667 -0.092 1.587 sum -15.850 4.355 -9.277 18.874 Atomic orbital electron populations 1.21860 0.93237 1.02218 1.02996 1.21321 0.97286 0.96852 0.95966 1.21941 1.01012 0.95057 1.02936 1.21010 0.78895 0.99809 0.96131 0.91738 1.22237 1.02196 1.00820 0.96736 1.46080 1.07473 1.30369 1.53333 1.20733 0.89947 0.80993 0.77793 1.90627 1.70570 1.38643 1.43724 1.21890 0.91493 0.97660 0.97773 1.61676 1.16196 1.00635 1.46987 1.19418 0.81637 0.96509 0.93808 1.21457 0.92859 1.19113 1.22343 0.92545 1.25802 0.95915 0.98589 0.98845 1.70086 1.00344 1.41877 1.44825 0.85419 0.78208 0.78820 0.78662 1.19124 1.20775 1.20051 1.21622 0.99797 0.88612 0.93296 1.22078 1.05127 0.90188 0.99711 1.23000 0.92382 1.03844 1.02917 1.22995 0.96337 0.96660 1.03168 0.91042 0.91659 0.92781 0.90606 0.92653 0.91135 0.91853 0.89829 0.95252 0.91157 0.75305 0.91740 0.88023 0.96522 1.01501 0.92765 0.90288 0.96461 0.89828 0.89425 0.89155 0.87543 0.87862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 8.84 71.98 0.64 -1.12 16 2 C -0.10 -1.40 2.91 -10.79 -0.03 -1.43 16 3 C -0.15 -1.88 8.67 71.98 0.62 -1.26 16 4 C 0.15 3.15 2.41 44.99 0.11 3.26 16 5 H 0.06 1.69 7.58 -2.39 -0.02 1.67 16 6 C -0.16 -3.46 8.78 71.98 0.63 -2.83 16 7 N -0.72 -17.82 5.00 -442.52 -2.21 -20.03 16 8 C 0.52 17.92 7.36 87.66 0.64 18.56 16 9 O -0.56 -23.26 14.14 -3.02 -0.04 -23.30 16 10 C 0.04 1.64 5.27 85.56 0.45 2.09 16 11 N -0.53 -24.33 4.12 -905.39 -3.73 -28.06 16 12 C 0.21 11.39 4.59 85.56 0.39 11.79 16 13 C -0.52 -29.66 8.60 25.60 0.22 -29.44 16 14 H 0.06 3.22 7.66 -2.91 -0.02 3.20 16 15 C 0.01 0.38 5.46 84.65 0.46 0.84 16 16 N -0.93 -55.72 13.29 21.45 0.28 -55.44 16 17 Si 0.96 44.54 29.54 68.60 2.03 46.57 16 18 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 19 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 20 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 21 C 0.09 3.86 4.80 86.30 0.41 4.28 16 22 C -0.15 -5.99 4.97 -10.79 -0.05 -6.05 16 23 C -0.18 -6.42 10.00 30.60 0.31 -6.12 16 24 C -0.15 -4.66 10.25 30.60 0.31 -4.34 16 25 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.06 0.75 6.43 -2.39 -0.02 0.73 16 27 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 28 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.05 0.69 6.50 -2.39 -0.02 0.67 16 30 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.06 0.79 6.43 -2.39 -0.02 0.77 16 32 H 0.08 1.43 6.43 -2.38 -0.02 1.41 16 33 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.07 1.33 6.43 -2.39 -0.02 1.32 16 35 H 0.41 8.00 6.87 -92.71 -0.64 7.37 16 36 H 0.06 2.20 8.12 -2.39 -0.02 2.18 16 37 H 0.10 3.99 7.31 -2.39 -0.02 3.97 16 38 H 0.02 0.97 6.97 -2.39 -0.02 0.96 16 39 H -0.03 -1.84 8.00 -2.39 -0.02 -1.86 16 40 H 0.26 14.82 8.31 -92.70 -0.77 14.05 16 41 H 0.08 3.16 5.80 -2.39 -0.01 3.15 16 42 H 0.02 0.69 7.79 -2.39 -0.02 0.68 16 43 H 0.08 3.72 8.14 -2.39 -0.02 3.70 16 44 H 0.09 3.03 8.03 -2.39 -0.02 3.01 16 45 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 46 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 47 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 Total: -1.00 -69.19 368.24 1.74 -67.44 By element: Atomic # 1 Polarization: 24.30 SS G_CDS: 0.30 Total: 24.59 kcal Atomic # 6 Polarization: -16.89 SS G_CDS: 5.12 Total: -11.77 kcal Atomic # 7 Polarization: -97.87 SS G_CDS: -5.66 Total: -103.53 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -0.04 Total: -23.30 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -69.19 1.74 -67.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081043841.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.005 kcal (2) G-P(sol) polarization free energy of solvation -69.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds