Wall clock time and date at job start Tue Mar 31 2020 05:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53008 * 109.46836 * 2 1 4 4 C 1.52995 * 109.47404 * 119.99922 * 2 1 3 5 5 H 1.09000 * 109.47117 * 301.89736 * 4 2 1 6 6 C 1.53003 * 109.46777 * 61.89708 * 4 2 1 7 7 N 1.46505 * 109.47471 * 181.89474 * 4 2 1 8 8 C 1.34780 * 119.99868 * 113.70673 * 7 4 2 9 9 O 1.21586 * 120.00084 * 3.32388 * 8 7 4 10 10 N 1.34772 * 119.99611 * 183.32123 * 8 7 4 11 11 C 1.46504 * 119.99594 * 184.44118 * 10 8 7 12 12 C 1.53000 * 109.47021 * 179.97438 * 11 10 8 13 13 C 1.53002 * 109.47134 * 180.02562 * 12 11 10 14 14 C 1.50693 * 109.47270 * 180.02562 * 13 12 11 15 15 H 1.08001 * 120.00121 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00264 * 179.97438 * 14 13 12 17 17 N 1.31517 * 119.99770 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99979 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.47226 * 60.00713 * 18 16 14 20 20 H 1.48502 * 109.46754 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47276 * 300.00421 * 18 16 14 22 22 C 1.46494 * 119.99830 * 293.71375 * 7 4 2 23 23 C 1.53002 * 117.49864 * 132.28781 * 22 7 4 24 24 C 1.52994 * 117.50525 * 63.62601 * 22 7 4 25 25 H 1.09000 * 109.47064 * 174.56844 * 1 2 3 26 26 H 1.09004 * 109.47050 * 54.57641 * 1 2 3 27 27 H 1.09001 * 109.47353 * 294.57036 * 1 2 3 28 28 H 1.09003 * 109.47639 * 240.00879 * 2 1 3 29 29 H 1.08999 * 109.47149 * 60.00290 * 3 2 1 30 30 H 1.09002 * 109.46890 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47427 * 300.00196 * 3 2 1 32 32 H 1.09005 * 109.46668 * 180.02562 * 6 4 2 33 33 H 1.08999 * 109.46743 * 300.00019 * 6 4 2 34 34 H 1.09000 * 109.47274 * 60.00125 * 6 4 2 35 35 H 0.96993 * 120.00353 * 4.44048 * 10 8 7 36 36 H 1.08996 * 109.47109 * 299.99861 * 11 10 8 37 37 H 1.09002 * 109.46873 * 60.00039 * 11 10 8 38 38 H 1.08996 * 109.47106 * 299.99912 * 12 11 10 39 39 H 1.09002 * 109.47225 * 60.00304 * 12 11 10 40 40 H 1.09009 * 109.46841 * 300.00098 * 13 12 11 41 41 H 1.09000 * 109.47497 * 59.99685 * 13 12 11 42 42 H 0.97005 * 119.99581 * 179.97438 * 17 16 14 43 43 H 1.09003 * 115.54750 * 277.94888 * 22 7 4 44 44 H 1.08999 * 117.49797 * 359.97438 * 23 22 7 45 45 H 1.09000 * 117.49869 * 145.01530 * 23 22 7 46 46 H 1.08998 * 117.50598 * 214.97637 * 24 22 7 47 47 H 1.09002 * 117.49851 * 359.97438 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6492 -0.2274 2.1389 6 6 1.5693 -2.1768 1.2255 7 7 3.5043 -0.6818 1.2723 8 6 4.1446 0.0164 2.2309 9 8 3.5093 0.5635 3.1115 10 7 5.4891 0.1081 2.2135 11 6 6.1915 0.7837 3.3074 12 6 7.6984 0.7476 3.0451 13 6 8.4320 1.4526 4.1878 14 6 9.9161 1.4176 3.9292 15 1 10.2981 0.9400 3.0391 16 6 10.7865 1.9955 4.8290 17 7 10.3215 2.5767 5.9132 18 14 12.6264 1.9514 4.5087 19 1 12.9226 2.6430 3.2285 20 1 13.3383 2.6358 5.6178 21 1 13.0808 0.5402 4.4257 22 6 4.2725 -1.4011 0.2532 23 6 5.4077 -0.6452 -0.4402 24 6 4.1144 -0.9500 -1.2002 25 1 -0.3633 -1.0230 -0.0973 26 1 -0.3633 0.5957 -0.8375 27 1 -0.3634 0.4273 0.9346 28 1 1.8934 -0.5137 -0.8901 29 1 1.6766 1.9564 0.8900 30 1 3.1299 1.4426 0.0005 31 1 1.6765 1.9565 -0.8899 32 1 1.9324 -2.6905 2.1157 33 1 0.4799 -2.2061 1.2084 34 1 1.9602 -2.6707 0.3358 35 1 5.9917 -0.2732 1.4767 36 1 5.8577 1.8195 3.3686 37 1 5.9743 0.2758 4.2470 38 1 8.0319 -0.2883 2.9842 39 1 7.9159 1.2552 2.1053 40 1 8.0985 2.4886 4.2492 41 1 8.2144 0.9447 5.1274 42 1 10.9339 2.9829 6.5464 43 1 4.4156 -2.4660 0.4370 44 1 5.5827 0.3875 -0.1385 45 1 6.2974 -1.2128 -0.7131 46 1 4.1538 -1.7180 -1.9727 47 1 3.4384 -0.1182 -1.3982 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086393086.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:26 Heat of formation + Delta-G solvation = -17.875931 kcal Electronic energy + Delta-G solvation = -23138.586744 eV Core-core repulsion = 19935.977471 eV Total energy + Delta-G solvation = -3202.609274 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.71177 -37.83345 -36.52838 -35.14428 -33.18237 -32.86994 -31.15181 -29.82390 -27.30474 -26.46870 -23.94930 -23.46519 -22.79675 -22.28873 -20.49151 -20.27375 -19.30240 -17.57555 -16.78409 -16.27703 -15.80921 -15.11234 -14.89023 -14.67553 -14.54773 -14.37048 -14.14282 -13.65585 -13.52466 -12.91409 -12.55093 -12.32934 -12.31735 -12.24915 -11.79068 -11.77278 -11.71520 -11.48298 -11.30016 -11.12084 -10.87320 -10.85073 -10.81720 -10.61961 -10.58386 -10.46393 -9.86771 -9.82456 -9.39374 -9.11146 -8.85734 -8.41647 -8.34957 -5.99778 -4.02851 2.68823 3.31329 3.32989 3.37714 3.39085 3.39675 4.01733 4.45552 4.50183 4.54835 4.57026 4.69074 4.80710 4.95813 5.10911 5.23802 5.28669 5.35786 5.36396 5.47449 5.49553 5.58106 5.65852 5.68709 5.72120 5.76088 5.79811 5.81798 5.86172 5.87513 6.04940 6.10945 6.23236 6.25501 6.53685 6.62444 6.66353 6.89261 7.06923 7.11528 7.66074 7.79629 7.99313 8.17408 8.40373 8.82760 9.03675 9.61032 11.11517 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031080 B = 0.003115 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.695785 B = 8985.313103 C = 9333.838178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.114 4.114 3 C -0.145 4.145 4 C 0.161 3.839 5 H 0.101 0.899 6 C -0.160 4.160 7 N -0.603 5.603 8 C 0.705 3.295 9 O -0.591 6.591 10 N -0.744 5.744 11 C 0.132 3.868 12 C -0.119 4.119 13 C 0.025 3.975 14 C -0.522 4.522 15 H 0.055 0.945 16 C 0.057 3.943 17 N -0.894 5.894 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.067 3.933 23 C -0.196 4.196 24 C -0.182 4.182 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.080 0.920 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.398 0.602 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.053 0.947 39 H 0.052 0.948 40 H 0.019 0.981 41 H 0.019 0.981 42 H 0.262 0.738 43 H 0.116 0.884 44 H 0.107 0.893 45 H 0.111 0.889 46 H 0.102 0.898 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.914 -9.311 -16.217 25.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.133 4.133 3 C -0.203 4.203 4 C 0.058 3.942 5 H 0.119 0.881 6 C -0.218 4.218 7 N -0.340 5.340 8 C 0.407 3.593 9 O -0.469 6.469 10 N -0.402 5.402 11 C 0.008 3.992 12 C -0.157 4.157 13 C -0.013 4.013 14 C -0.561 4.561 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.533 5.533 18 Si 0.721 3.279 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.038 4.038 23 C -0.234 4.234 24 C -0.220 4.220 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.098 0.902 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.236 0.764 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.037 0.963 41 H 0.037 0.963 42 H 0.071 0.929 43 H 0.133 0.867 44 H 0.125 0.875 45 H 0.130 0.870 46 H 0.120 0.880 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -18.296 -8.808 -15.345 25.452 hybrid contribution 1.396 -0.189 -0.482 1.489 sum -16.900 -8.997 -15.827 24.840 Atomic orbital electron populations 1.21853 0.94717 1.01715 1.02061 1.21704 0.95899 0.96869 0.98862 1.21805 1.01250 0.95573 1.01624 1.20962 0.77995 0.96066 0.99219 0.88082 1.22153 1.01424 0.96000 1.02270 1.46661 1.05637 1.53005 1.28663 1.15947 0.82369 0.79333 0.81647 1.90894 1.66140 1.51898 1.38017 1.45862 1.04791 1.61964 1.27582 1.21506 0.92632 0.96712 0.88330 1.21875 0.91122 1.01093 1.01649 1.19017 0.94329 0.95596 0.92342 1.21171 0.91622 1.36451 1.06836 0.92724 1.25029 0.98910 0.95358 0.95153 1.69962 1.34901 1.37341 1.11084 0.86646 0.85338 0.78181 0.77746 1.20257 1.21277 1.20264 1.21581 0.98607 0.95795 0.87814 1.23510 0.93471 1.02532 1.03890 1.23563 1.00095 1.04323 0.93997 0.92423 0.92596 0.92463 0.90188 0.92372 0.92750 0.93018 0.92297 0.91350 0.92318 0.76401 0.91997 0.92149 0.92870 0.92888 0.96265 0.96268 0.92882 0.86672 0.87466 0.87046 0.87969 0.87206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 8.73 37.15 0.32 -0.74 16 2 C -0.11 -1.00 1.94 -90.62 -0.18 -1.18 16 3 C -0.15 -1.51 8.31 37.16 0.31 -1.20 16 4 C 0.16 1.73 2.22 -67.93 -0.15 1.58 16 5 H 0.10 1.35 6.92 -51.93 -0.36 0.99 16 6 C -0.16 -1.36 8.79 37.16 0.33 -1.03 16 7 N -0.60 -7.29 1.89 -164.24 -0.31 -7.60 16 8 C 0.71 11.52 7.92 -86.92 -0.69 10.83 16 9 O -0.59 -11.96 15.69 5.29 0.08 -11.88 16 10 N -0.74 -11.73 4.95 -65.22 -0.32 -12.06 16 11 C 0.13 2.46 5.68 -4.04 -0.02 2.44 16 12 C -0.12 -2.40 5.27 -26.73 -0.14 -2.54 16 13 C 0.02 0.64 4.97 -27.89 -0.14 0.50 16 14 C -0.52 -14.71 9.11 -34.44 -0.31 -15.03 16 15 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 17 N -0.89 -27.05 13.29 55.43 0.74 -26.31 16 18 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 C 0.07 0.62 4.81 -67.94 -0.33 0.29 16 23 C -0.20 -1.71 8.03 -26.69 -0.21 -1.92 16 24 C -0.18 -1.34 8.97 -26.70 -0.24 -1.58 16 25 H 0.06 0.36 6.77 -51.93 -0.35 0.01 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.08 0.63 5.28 -51.93 -0.27 0.35 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.65 6.78 -51.93 -0.35 0.29 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.48 6.60 -51.93 -0.34 0.14 16 34 H 0.06 0.43 7.53 -51.93 -0.39 0.04 16 35 H 0.40 5.33 4.56 -40.82 -0.19 5.14 16 36 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.02 0.52 8.14 -51.92 -0.42 0.10 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 43 H 0.12 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.11 1.13 6.98 -51.93 -0.36 0.77 16 45 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.11 0.87 4.61 -51.93 -0.24 0.63 16 LS Contribution 362.93 15.07 5.47 5.47 Total: -1.00 -32.38 362.93 -9.23 -41.61 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -8.32 Total: 2.23 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: -1.55 Total: -8.04 kcal Atomic # 7 Polarization: -46.07 SS G_CDS: 0.10 Total: -45.97 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.08 Total: -11.88 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.38 -9.23 -41.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086393086.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.737 kcal (2) G-P(sol) polarization free energy of solvation -32.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds