Wall clock time and date at job start Tue Mar 31 2020 05:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47482 * 2 1 4 4 C 1.53001 * 109.47190 * 119.99646 * 2 1 3 5 5 H 1.09008 * 109.47129 * 61.92886 * 4 2 1 6 6 C 1.52996 * 109.47306 * 301.93194 * 4 2 1 7 7 N 1.46495 * 109.47527 * 181.92621 * 4 2 1 8 8 C 1.34778 * 120.00301 * 294.74963 * 7 4 2 9 9 O 1.21585 * 119.99468 * 3.04192 * 8 7 4 10 10 N 1.34779 * 119.99982 * 183.04504 * 8 7 4 11 11 C 1.46499 * 119.99584 * 184.41806 * 10 8 7 12 12 C 1.53000 * 109.46959 * 179.97438 * 11 10 8 13 13 C 1.53001 * 109.47088 * 179.97438 * 12 11 10 14 14 C 1.50702 * 109.46894 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00426 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99911 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00033 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00040 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47611 * 89.99214 * 18 16 14 20 20 H 1.48500 * 109.46877 * 209.99688 * 18 16 14 21 21 H 1.48500 * 109.46789 * 329.98985 * 18 16 14 22 22 C 1.46502 * 119.99878 * 114.74094 * 7 4 2 23 23 C 1.53003 * 117.49644 * 131.82997 * 22 7 4 24 24 C 1.53005 * 117.49771 * 63.17569 * 22 7 4 25 25 H 1.09007 * 109.47599 * 300.00341 * 1 2 3 26 26 H 1.08997 * 109.47512 * 60.00045 * 1 2 3 27 27 H 1.09002 * 109.47238 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47351 * 239.99431 * 2 1 3 29 29 H 1.08991 * 109.47338 * 184.78115 * 3 2 1 30 30 H 1.09004 * 109.47008 * 304.78569 * 3 2 1 31 31 H 1.09008 * 109.47036 * 64.77777 * 3 2 1 32 32 H 1.09001 * 109.47341 * 59.99375 * 6 4 2 33 33 H 1.09001 * 109.46804 * 299.99502 * 6 4 2 34 34 H 1.09002 * 109.47508 * 179.97438 * 6 4 2 35 35 H 0.96999 * 119.99994 * 4.41037 * 10 8 7 36 36 H 1.08997 * 109.47286 * 299.99516 * 11 10 8 37 37 H 1.08996 * 109.47282 * 59.99726 * 11 10 8 38 38 H 1.09001 * 109.47215 * 299.99684 * 12 11 10 39 39 H 1.08996 * 109.47261 * 59.99819 * 12 11 10 40 40 H 1.08997 * 109.47468 * 299.99812 * 13 12 11 41 41 H 1.09006 * 109.46955 * 60.00524 * 13 12 11 42 42 H 0.96996 * 120.00401 * 180.02562 * 17 16 14 43 43 H 1.09001 * 115.55636 * 277.50143 * 22 7 4 44 44 H 1.08998 * 117.49950 * 0.02562 * 23 22 7 45 45 H 1.09006 * 117.49521 * 145.02145 * 23 22 7 46 46 H 1.08999 * 117.49961 * 214.98043 * 24 22 7 47 47 H 1.08998 * 117.49664 * 359.97438 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.7051 -1.7584 1.2322 6 6 1.4907 -0.0285 2.4980 7 7 3.5042 -0.6811 1.2728 8 6 4.2113 -1.3252 0.3233 9 8 3.6344 -1.8931 -0.5839 10 7 5.5578 -1.3399 0.3795 11 6 6.3294 -1.9561 -0.7027 12 6 7.8235 -1.8379 -0.3952 13 6 8.6293 -2.4819 -1.5251 14 6 10.1010 -2.3649 -1.2224 15 1 10.4288 -1.8794 -0.3151 16 6 11.0290 -2.8769 -2.1043 17 7 10.6299 -3.4677 -3.2094 18 14 12.8532 -2.7325 -1.7288 19 1 13.2959 -3.9226 -0.9589 20 1 13.6156 -2.6540 -3.0007 21 1 13.0981 -1.5059 -0.9284 22 6 4.1998 0.0592 2.3284 23 6 5.3453 -0.6514 3.0523 24 6 4.0125 -0.4209 3.7690 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 3.1266 1.4436 -0.0856 30 1 1.6084 1.9805 -0.8440 31 1 1.7483 1.9310 0.9298 32 1 0.4012 -0.0583 2.4805 33 1 1.8255 1.0086 2.5151 34 1 1.8536 -0.5426 3.3881 35 1 6.0160 -0.9424 1.1364 36 1 6.0580 -3.0082 -0.7890 37 1 6.1105 -1.4463 -1.6409 38 1 8.0946 -0.7856 -0.3092 39 1 8.0427 -2.3474 0.5431 40 1 8.3582 -3.5342 -1.6107 41 1 8.4102 -1.9727 -2.4636 42 1 11.2827 -3.8282 -3.8297 43 1 4.2971 1.1324 2.1642 44 1 5.5815 -1.6695 2.7428 45 1 6.1959 -0.0455 3.3646 46 1 3.9869 0.3363 4.5526 47 1 3.3714 -1.2873 3.9314 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086393090.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:29 Heat of formation + Delta-G solvation = -15.396566 kcal Electronic energy + Delta-G solvation = -23109.108036 eV Core-core repulsion = 19906.606275 eV Total energy + Delta-G solvation = -3202.501760 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.70362 -37.73532 -36.85197 -35.13248 -33.18438 -32.55762 -31.11139 -29.62710 -27.27410 -26.54927 -24.47917 -23.42854 -22.82526 -21.98087 -20.52831 -20.20112 -18.85555 -17.46599 -16.75972 -16.30427 -15.93786 -15.38688 -15.06044 -14.62492 -14.50105 -14.27989 -14.21603 -13.65287 -13.18725 -13.01892 -12.73592 -12.40956 -12.25749 -12.00421 -11.77837 -11.73285 -11.66257 -11.58852 -11.18832 -11.01862 -10.89499 -10.82468 -10.74071 -10.60175 -10.57248 -10.46922 -9.83011 -9.78345 -9.37960 -9.09791 -8.81961 -8.38175 -8.35124 -5.99852 -4.02841 2.69055 3.30835 3.31764 3.38055 3.40758 3.41214 4.00624 4.45667 4.50652 4.55396 4.70558 4.74374 4.83266 5.00075 5.11779 5.17504 5.27025 5.34668 5.35813 5.48377 5.53945 5.61150 5.64012 5.73730 5.76852 5.78450 5.81388 5.84847 5.86783 5.97036 6.08215 6.21465 6.23874 6.34514 6.56975 6.66554 6.66711 6.90342 7.07562 7.11778 7.66399 7.79744 7.99340 8.18989 8.40415 8.84580 9.03902 9.61099 11.11475 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027561 B = 0.003201 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.696581 B = 8745.730828 C = 9392.372263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.115 4.115 3 C -0.140 4.140 4 C 0.175 3.825 5 H 0.071 0.929 6 C -0.167 4.167 7 N -0.605 5.605 8 C 0.705 3.295 9 O -0.588 6.588 10 N -0.744 5.744 11 C 0.132 3.868 12 C -0.119 4.119 13 C 0.024 3.976 14 C -0.522 4.522 15 H 0.055 0.945 16 C 0.056 3.944 17 N -0.894 5.894 18 Si 0.893 3.107 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.274 1.274 22 C 0.068 3.932 23 C -0.197 4.197 24 C -0.171 4.171 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.091 0.909 29 H 0.052 0.948 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.397 0.603 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.052 0.948 39 H 0.052 0.948 40 H 0.019 0.981 41 H 0.019 0.981 42 H 0.261 0.739 43 H 0.115 0.885 44 H 0.107 0.893 45 H 0.111 0.889 46 H 0.104 0.896 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.837 9.771 14.522 25.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.135 4.135 3 C -0.198 4.198 4 C 0.072 3.928 5 H 0.089 0.911 6 C -0.224 4.224 7 N -0.342 5.342 8 C 0.406 3.594 9 O -0.466 6.466 10 N -0.402 5.402 11 C 0.009 3.991 12 C -0.157 4.157 13 C -0.013 4.013 14 C -0.560 4.560 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.533 5.533 18 Si 0.721 3.279 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.038 4.038 23 C -0.235 4.235 24 C -0.209 4.209 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.109 0.891 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.235 0.765 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.037 0.963 41 H 0.037 0.963 42 H 0.071 0.929 43 H 0.132 0.868 44 H 0.125 0.875 45 H 0.129 0.871 46 H 0.122 0.878 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -19.176 9.263 13.655 25.298 hybrid contribution 1.350 0.224 0.454 1.442 sum -17.826 9.486 14.109 24.634 Atomic orbital electron populations 1.21849 0.95037 1.01675 1.01593 1.21555 0.95407 0.96681 0.99809 1.21792 1.01172 0.95776 1.01036 1.20767 0.77568 0.99442 0.95017 0.91073 1.22344 1.01318 1.01441 0.97267 1.46764 1.05564 1.54406 1.27506 1.15939 0.82046 0.79468 0.81926 1.90885 1.69733 1.50119 1.35899 1.45851 1.04408 1.63360 1.26609 1.21495 0.91425 0.97595 0.88623 1.21874 0.91294 1.01007 1.01561 1.19025 0.93838 0.95969 0.92502 1.21209 0.91319 1.37419 1.06041 0.92674 1.25032 0.99050 0.95312 0.95088 1.69967 1.34075 1.38473 1.10762 0.86588 0.85278 0.78413 0.77666 1.20678 1.21221 1.19905 1.21588 0.99699 0.95484 0.86993 1.23561 0.93143 1.03051 1.03758 1.23373 0.99364 1.03785 0.94405 0.92622 0.92690 0.92710 0.89109 0.92866 0.93146 0.92892 0.91220 0.91571 0.91406 0.76479 0.92019 0.92174 0.92880 0.92898 0.96257 0.96264 0.92943 0.86768 0.87472 0.87064 0.87812 0.88056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 8.79 37.15 0.33 -0.93 16 2 C -0.12 -1.28 2.61 -90.62 -0.24 -1.52 16 3 C -0.14 -1.43 8.75 37.16 0.33 -1.11 16 4 C 0.18 1.89 2.45 -67.93 -0.17 1.72 16 5 H 0.07 0.87 8.14 -51.92 -0.42 0.45 16 6 C -0.17 -1.23 7.23 37.16 0.27 -0.96 16 7 N -0.60 -7.30 2.16 -164.23 -0.35 -7.65 16 8 C 0.70 11.47 7.88 -86.91 -0.69 10.79 16 9 O -0.59 -11.77 14.73 5.29 0.08 -11.69 16 10 N -0.74 -11.72 4.96 -65.23 -0.32 -12.04 16 11 C 0.13 2.47 5.68 -4.04 -0.02 2.44 16 12 C -0.12 -2.40 5.27 -26.73 -0.14 -2.54 16 13 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16 14 C -0.52 -14.69 9.11 -34.44 -0.31 -15.00 16 15 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 17 N -0.89 -27.03 13.29 55.43 0.74 -26.30 16 18 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 22 C 0.07 0.61 4.68 -67.93 -0.32 0.29 16 23 C -0.20 -1.69 8.03 -26.69 -0.21 -1.90 16 24 C -0.17 -1.21 8.34 -26.69 -0.22 -1.43 16 25 H 0.05 0.40 6.39 -51.92 -0.33 0.07 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.09 1.35 6.50 -51.93 -0.34 1.01 16 29 H 0.05 0.63 7.71 -51.93 -0.40 0.23 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.45 6.24 -51.92 -0.32 0.12 16 32 H 0.07 0.44 6.39 -51.93 -0.33 0.11 16 33 H 0.07 0.46 5.89 -51.93 -0.31 0.16 16 34 H 0.07 0.46 5.11 -51.93 -0.27 0.20 16 35 H 0.40 5.31 4.62 -40.82 -0.19 5.12 16 36 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 43 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.11 1.12 7.04 -51.93 -0.37 0.76 16 45 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.10 0.76 6.94 -51.93 -0.36 0.40 16 LS Contribution 359.99 15.07 5.42 5.42 Total: -1.00 -32.36 359.99 -9.34 -41.70 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -8.25 Total: 2.13 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: -1.64 Total: -8.14 kcal Atomic # 7 Polarization: -46.05 SS G_CDS: 0.06 Total: -45.99 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: 0.08 Total: -11.69 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.36 -9.34 -41.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086393090.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.305 kcal (2) G-P(sol) polarization free energy of solvation -32.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds