Wall clock time and date at job start Tue Mar 31 2020 05:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.47274 * 2 1 4 4 C 1.52998 * 109.47334 * 120.00382 * 2 1 3 5 5 C 1.50703 * 109.46776 * 294.99711 * 4 2 1 6 6 O 1.21279 * 120.00455 * 0.02562 * 5 4 2 7 7 N 1.34780 * 119.99841 * 179.97438 * 5 4 2 8 8 C 1.46964 * 120.59330 * 180.02562 * 7 5 4 9 9 C 1.53369 * 108.63607 * 235.24462 * 8 7 5 10 10 N 1.46969 * 108.63762 * 310.58254 * 9 8 7 11 11 C 1.36932 * 120.58959 * 235.20011 * 10 9 8 12 12 H 1.08009 * 119.99567 * 151.84041 * 11 10 9 13 13 C 1.38803 * 120.00220 * 331.56903 * 11 10 9 14 14 N 1.31619 * 120.00213 * 342.83014 * 13 11 10 15 15 Si 1.86802 * 120.00125 * 162.83365 * 13 11 10 16 16 H 1.48504 * 109.47318 * 59.99595 * 15 13 11 17 17 H 1.48506 * 109.47396 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47177 * 299.99833 * 15 13 11 19 19 C 1.46960 * 118.81241 * 55.46896 * 10 9 8 20 20 C 1.46968 * 120.59114 * 0.02562 * 7 5 4 21 21 C 1.52999 * 109.47169 * 240.00669 * 2 1 3 22 22 C 1.53008 * 109.46753 * 299.99535 * 21 2 1 23 23 C 1.53000 * 109.47592 * 59.99639 * 21 2 1 24 24 C 1.52999 * 109.47169 * 179.97438 * 21 2 1 25 25 H 1.08999 * 109.46910 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47093 * 299.99911 * 1 2 3 27 27 H 1.08997 * 109.47180 * 59.99955 * 1 2 3 28 28 H 1.08998 * 109.46844 * 175.00212 * 4 2 1 29 29 H 1.08991 * 109.47231 * 54.99812 * 4 2 1 30 30 H 1.09006 * 109.60531 * 115.50651 * 8 7 5 31 31 H 1.08997 * 109.61145 * 354.99679 * 8 7 5 32 32 H 1.08994 * 109.61100 * 190.83261 * 9 8 7 33 33 H 1.08997 * 109.60550 * 70.32335 * 9 8 7 34 34 H 0.97003 * 120.00245 * 180.02562 * 14 13 11 35 35 H 1.09003 * 109.60875 * 64.26982 * 19 10 9 36 36 H 1.08995 * 109.60997 * 184.77607 * 19 10 9 37 37 H 1.08999 * 109.60725 * 244.49166 * 20 7 5 38 38 H 1.08994 * 109.60885 * 4.83552 * 20 7 5 39 39 H 1.08998 * 109.46684 * 60.00362 * 22 21 2 40 40 H 1.09001 * 109.46525 * 180.02562 * 22 21 2 41 41 H 1.08997 * 109.47148 * 300.00350 * 22 21 2 42 42 H 1.08998 * 109.46669 * 59.99822 * 23 21 2 43 43 H 1.09000 * 109.47157 * 180.02562 * 23 21 2 44 44 H 1.08996 * 109.46831 * 300.00384 * 23 21 2 45 45 H 1.08995 * 109.47427 * 59.99852 * 24 21 2 46 46 H 1.09000 * 109.47093 * 179.97438 * 24 21 2 47 47 H 1.08999 * 109.46910 * 299.99269 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 0.0570 2.4765 6 8 1.0110 1.0869 2.3634 7 7 1.9846 -0.3920 3.7001 8 6 1.6022 0.3563 4.9058 9 6 2.8674 0.6532 5.7202 10 7 3.6312 -0.5932 5.8725 11 6 3.9806 -1.0489 7.1156 12 1 4.1147 -2.1071 7.2848 13 6 4.1679 -0.1503 8.1569 14 7 4.3460 1.1280 7.8990 15 14 4.1673 -0.7553 9.9242 16 1 5.2556 -1.7490 10.1077 17 1 4.3862 0.3926 10.8406 18 1 2.8603 -1.3907 10.2295 19 6 4.0183 -1.3385 4.6666 20 6 2.7479 -1.6387 3.8524 21 6 2.0400 -0.7211 -1.2493 22 6 1.5300 -2.1637 -1.2493 23 6 1.5300 0.0002 -2.4985 24 6 3.5700 -0.7205 -1.2496 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 3.1263 -0.7995 1.2054 29 1 1.6055 -1.7198 1.2951 30 1 0.9139 -0.2410 5.5040 31 1 1.1236 1.2926 4.6189 32 1 2.5890 1.0340 6.7028 33 1 3.4740 1.3923 5.1971 34 1 4.4773 1.7559 8.6267 35 1 4.7050 -0.7379 4.0700 36 1 4.5003 -2.2732 4.9531 37 1 2.1410 -2.3775 4.3758 38 1 3.0233 -2.0213 2.8698 39 1 0.4400 -2.1636 -1.2493 40 1 1.8938 -2.6775 -2.1392 41 1 1.8934 -2.6775 -0.3594 42 1 1.8933 1.0278 -2.4984 43 1 1.8930 -0.5139 -3.3885 44 1 0.4400 0.0001 -2.4985 45 1 3.9337 -1.2341 -0.3598 46 1 3.9333 -1.2347 -2.1394 47 1 3.9329 0.3073 -1.2499 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104438121.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:04 Heat of formation + Delta-G solvation = -28.961560 kcal Electronic energy + Delta-G solvation = -23709.066680 eV Core-core repulsion = 20505.976698 eV Total energy + Delta-G solvation = -3203.089983 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.02607 -38.29201 -36.65319 -33.87454 -31.97834 -31.17586 -30.33154 -28.70197 -27.44635 -27.08669 -26.04551 -23.69950 -23.13120 -22.32960 -20.41377 -18.59618 -18.08285 -17.15694 -16.22835 -15.51486 -15.31043 -14.93099 -14.68271 -14.32954 -14.02530 -13.84786 -13.66369 -13.51061 -13.25412 -13.10312 -12.77496 -12.47160 -12.06792 -11.96879 -11.89997 -11.69887 -11.66375 -11.24684 -11.18960 -11.14877 -10.81763 -10.72764 -10.58307 -10.42080 -10.36094 -10.33124 -10.23477 -9.94375 -9.84835 -9.16605 -8.58533 -8.18289 -6.71103 -5.85001 -3.30657 3.07340 3.34752 3.41114 3.41534 3.52191 4.43643 4.59490 4.65341 4.72390 5.02507 5.09783 5.22007 5.27515 5.32546 5.42015 5.52285 5.53778 5.56160 5.62848 5.72319 5.74562 5.78014 5.82184 5.84918 5.88016 5.89885 5.96247 6.00313 6.10707 6.14367 6.18744 6.30536 6.37607 6.40149 6.45850 6.52179 6.59861 6.70546 6.90720 7.27928 7.55258 7.71610 7.98759 8.36105 8.66258 9.11752 9.74570 10.31532 11.22260 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.036613 B = 0.003676 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.571156 B = 7614.910624 C = 7890.530841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.062 4.062 3 H 0.076 0.924 4 C -0.138 4.138 5 C 0.508 3.492 6 O -0.554 6.554 7 N -0.599 5.599 8 C 0.087 3.913 9 C 0.159 3.841 10 N -0.591 5.591 11 C -0.260 4.260 12 H 0.067 0.933 13 C 0.005 3.995 14 N -0.901 5.901 15 Si 0.905 3.095 16 H -0.282 1.282 17 H -0.290 1.290 18 H -0.283 1.283 19 C 0.131 3.869 20 C 0.089 3.911 21 C -0.066 4.066 22 C -0.145 4.145 23 C -0.141 4.141 24 C -0.146 4.146 25 H 0.048 0.952 26 H 0.074 0.926 27 H 0.051 0.949 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.058 0.942 31 H 0.080 0.920 32 H 0.099 0.901 33 H 0.022 0.978 34 H 0.256 0.744 35 H 0.023 0.977 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.072 0.928 39 H 0.058 0.942 40 H 0.051 0.949 41 H 0.057 0.943 42 H 0.054 0.946 43 H 0.051 0.949 44 H 0.058 0.942 45 H 0.059 0.941 46 H 0.052 0.948 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.745 -5.858 -17.262 18.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.081 4.081 3 H 0.095 0.905 4 C -0.178 4.178 5 C 0.296 3.704 6 O -0.434 6.434 7 N -0.331 5.331 8 C -0.037 4.037 9 C 0.033 3.967 10 N -0.314 5.314 11 C -0.389 4.389 12 H 0.085 0.915 13 C -0.195 4.195 14 N -0.544 5.544 15 Si 0.734 3.266 16 H -0.208 1.208 17 H -0.216 1.216 18 H -0.209 1.209 19 C 0.003 3.997 20 C -0.036 4.036 21 C -0.066 4.066 22 C -0.203 4.203 23 C -0.198 4.198 24 C -0.203 4.203 25 H 0.067 0.933 26 H 0.093 0.907 27 H 0.070 0.930 28 H 0.110 0.890 29 H 0.107 0.893 30 H 0.076 0.924 31 H 0.098 0.902 32 H 0.117 0.883 33 H 0.040 0.960 34 H 0.066 0.934 35 H 0.041 0.959 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.071 0.929 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.025 -5.182 -17.162 18.618 hybrid contribution 0.190 -0.346 1.023 1.096 sum -4.835 -5.528 -16.139 17.731 Atomic orbital electron populations 1.22042 0.94985 1.01276 1.02861 1.20878 0.96322 0.99350 0.91530 0.90550 1.21867 1.02793 1.00113 0.92985 1.20636 0.79462 0.85704 0.84576 1.90600 1.41379 1.25120 1.86302 1.48105 1.54084 1.24854 1.06084 1.22473 0.99924 0.96091 0.85192 1.21179 0.88424 0.87796 0.99325 1.43997 1.61237 1.25172 1.00966 1.19148 1.42546 0.91582 0.85611 0.91530 1.25087 0.99648 0.95812 0.98911 1.70014 1.51274 1.02000 1.31142 0.86340 0.78115 0.77640 0.84466 1.20831 1.21580 1.20926 1.21368 0.92462 0.96602 0.89236 1.22449 0.95244 0.85644 1.00243 1.20580 0.95408 0.95538 0.95115 1.21984 1.01265 0.95459 1.01543 1.21902 1.01232 1.00134 0.96579 1.21959 0.94736 1.01932 1.01676 0.93319 0.90666 0.92985 0.88955 0.89274 0.92400 0.90213 0.88345 0.95970 0.93386 0.95920 0.91557 0.91723 0.90973 0.92332 0.93030 0.92430 0.92725 0.93001 0.92340 0.92252 0.92872 0.92603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 8.23 37.16 0.31 -1.56 16 2 C -0.06 -0.74 1.40 -90.62 -0.13 -0.86 16 3 H 0.08 1.05 7.96 -51.93 -0.41 0.64 16 4 C -0.14 -1.74 2.80 -27.88 -0.08 -1.82 16 5 C 0.51 8.72 7.41 -10.98 -0.08 8.64 16 6 O -0.55 -11.10 13.37 5.56 0.07 -11.02 16 7 N -0.60 -10.88 2.95 -172.19 -0.51 -11.39 16 8 C 0.09 1.77 6.59 -3.60 -0.02 1.75 16 9 C 0.16 3.82 5.51 -3.60 -0.02 3.80 16 10 N -0.59 -14.43 2.96 -171.75 -0.51 -14.94 16 11 C -0.26 -6.91 9.57 -15.06 -0.14 -7.05 16 12 H 0.07 1.72 7.89 -52.48 -0.41 1.30 16 13 C 0.00 0.12 4.91 -17.43 -0.09 0.04 16 14 N -0.90 -25.79 11.20 55.49 0.62 -25.17 16 15 Si 0.90 21.22 29.59 -169.99 -5.03 16.20 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 19 C 0.13 2.58 6.70 -3.35 -0.02 2.55 16 20 C 0.09 1.44 6.53 -3.34 -0.02 1.42 16 21 C -0.07 -0.63 0.57 -154.50 -0.09 -0.71 16 22 C -0.15 -1.24 7.77 37.16 0.29 -0.95 16 23 C -0.14 -1.23 8.12 37.16 0.30 -0.93 16 24 C -0.15 -1.33 8.13 37.16 0.30 -1.03 16 25 H 0.05 0.53 6.43 -51.93 -0.33 0.19 16 26 H 0.07 1.13 5.95 -51.93 -0.31 0.82 16 27 H 0.05 0.56 6.43 -51.93 -0.33 0.23 16 28 H 0.09 1.09 5.76 -51.93 -0.30 0.79 16 29 H 0.09 0.99 6.47 -51.93 -0.34 0.65 16 30 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 31 H 0.08 1.64 6.99 -51.93 -0.36 1.28 16 32 H 0.10 2.61 6.00 -51.93 -0.31 2.30 16 33 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 1.23 7.93 -51.93 -0.41 0.82 16 37 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 38 H 0.07 0.91 5.91 -51.93 -0.31 0.60 16 39 H 0.06 0.50 6.43 -51.93 -0.33 0.16 16 40 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.06 0.48 6.54 -51.93 -0.34 0.14 16 42 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.06 0.50 6.43 -51.93 -0.33 0.17 16 45 H 0.06 0.54 6.32 -51.93 -0.33 0.21 16 46 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 346.65 15.07 5.22 5.22 Total: -1.00 -30.10 346.65 -7.73 -37.82 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -8.11 Total: 0.01 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: 0.51 Total: 3.28 kcal Atomic # 7 Polarization: -51.11 SS G_CDS: -0.39 Total: -51.50 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.07 Total: -11.02 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.20 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.10 -7.73 -37.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104438121.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.861 kcal (2) G-P(sol) polarization free energy of solvation -30.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds