Wall clock time and date at job start Tue Mar 31 2020 05:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.47274 * 2 1 4 4 C 1.52998 * 109.47334 * 120.00382 * 2 1 3 5 5 C 1.50703 * 109.46776 * 294.99711 * 4 2 1 6 6 O 1.21279 * 120.00455 * 0.02562 * 5 4 2 7 7 N 1.34780 * 119.99841 * 179.97438 * 5 4 2 8 8 C 1.46964 * 120.59330 * 180.02562 * 7 5 4 9 9 C 1.53369 * 108.63607 * 235.24462 * 8 7 5 10 10 N 1.46969 * 108.63762 * 310.58254 * 9 8 7 11 11 C 1.36932 * 120.58959 * 235.20011 * 10 9 8 12 12 H 1.08009 * 119.99567 * 151.84041 * 11 10 9 13 13 C 1.38803 * 120.00220 * 331.56903 * 11 10 9 14 14 N 1.31619 * 120.00213 * 342.83014 * 13 11 10 15 15 Si 1.86802 * 120.00125 * 162.83365 * 13 11 10 16 16 H 1.48504 * 109.47318 * 59.99595 * 15 13 11 17 17 H 1.48506 * 109.47396 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47177 * 299.99833 * 15 13 11 19 19 C 1.46960 * 118.81241 * 55.46896 * 10 9 8 20 20 C 1.46968 * 120.59114 * 0.02562 * 7 5 4 21 21 C 1.52999 * 109.47169 * 240.00669 * 2 1 3 22 22 C 1.53008 * 109.46753 * 299.99535 * 21 2 1 23 23 C 1.53000 * 109.47592 * 59.99639 * 21 2 1 24 24 C 1.52999 * 109.47169 * 179.97438 * 21 2 1 25 25 H 1.08999 * 109.46910 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47093 * 299.99911 * 1 2 3 27 27 H 1.08997 * 109.47180 * 59.99955 * 1 2 3 28 28 H 1.08998 * 109.46844 * 175.00212 * 4 2 1 29 29 H 1.08991 * 109.47231 * 54.99812 * 4 2 1 30 30 H 1.09006 * 109.60531 * 115.50651 * 8 7 5 31 31 H 1.08997 * 109.61145 * 354.99679 * 8 7 5 32 32 H 1.08994 * 109.61100 * 190.83261 * 9 8 7 33 33 H 1.08997 * 109.60550 * 70.32335 * 9 8 7 34 34 H 0.97003 * 120.00245 * 180.02562 * 14 13 11 35 35 H 1.09003 * 109.60875 * 64.26982 * 19 10 9 36 36 H 1.08995 * 109.60997 * 184.77607 * 19 10 9 37 37 H 1.08999 * 109.60725 * 244.49166 * 20 7 5 38 38 H 1.08994 * 109.60885 * 4.83552 * 20 7 5 39 39 H 1.08998 * 109.46684 * 60.00362 * 22 21 2 40 40 H 1.09001 * 109.46525 * 180.02562 * 22 21 2 41 41 H 1.08997 * 109.47148 * 300.00350 * 22 21 2 42 42 H 1.08998 * 109.46669 * 59.99822 * 23 21 2 43 43 H 1.09000 * 109.47157 * 180.02562 * 23 21 2 44 44 H 1.08996 * 109.46831 * 300.00384 * 23 21 2 45 45 H 1.08995 * 109.47427 * 59.99852 * 24 21 2 46 46 H 1.09000 * 109.47093 * 179.97438 * 24 21 2 47 47 H 1.08999 * 109.46910 * 299.99269 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 0.0570 2.4765 6 8 1.0110 1.0869 2.3634 7 7 1.9846 -0.3920 3.7001 8 6 1.6022 0.3563 4.9058 9 6 2.8674 0.6532 5.7202 10 7 3.6312 -0.5932 5.8725 11 6 3.9806 -1.0489 7.1156 12 1 4.1147 -2.1071 7.2848 13 6 4.1679 -0.1503 8.1569 14 7 4.3460 1.1280 7.8990 15 14 4.1673 -0.7553 9.9242 16 1 5.2556 -1.7490 10.1077 17 1 4.3862 0.3926 10.8406 18 1 2.8603 -1.3907 10.2295 19 6 4.0183 -1.3385 4.6666 20 6 2.7479 -1.6387 3.8524 21 6 2.0400 -0.7211 -1.2493 22 6 1.5300 -2.1637 -1.2493 23 6 1.5300 0.0002 -2.4985 24 6 3.5700 -0.7205 -1.2496 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 3.1263 -0.7995 1.2054 29 1 1.6055 -1.7198 1.2951 30 1 0.9139 -0.2410 5.5040 31 1 1.1236 1.2926 4.6189 32 1 2.5890 1.0340 6.7028 33 1 3.4740 1.3923 5.1971 34 1 4.4773 1.7559 8.6267 35 1 4.7050 -0.7379 4.0700 36 1 4.5003 -2.2732 4.9531 37 1 2.1410 -2.3775 4.3758 38 1 3.0233 -2.0213 2.8698 39 1 0.4400 -2.1636 -1.2493 40 1 1.8938 -2.6775 -2.1392 41 1 1.8934 -2.6775 -0.3594 42 1 1.8933 1.0278 -2.4984 43 1 1.8930 -0.5139 -3.3885 44 1 0.4400 0.0001 -2.4985 45 1 3.9337 -1.2341 -0.3598 46 1 3.9333 -1.2347 -2.1394 47 1 3.9329 0.3073 -1.2499 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104438121.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:03 Heat of formation + Delta-G solvation = -45.755540 kcal Electronic energy + Delta-G solvation = -23709.794922 eV Core-core repulsion = 20505.976698 eV Total energy + Delta-G solvation = -3203.818224 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.31032 -39.38076 -38.19770 -35.62174 -33.13968 -32.96259 -31.83821 -29.74212 -28.60098 -28.08594 -27.14156 -25.41348 -24.55662 -23.58460 -22.01709 -20.07474 -19.02308 -18.68221 -17.79619 -16.86301 -16.77799 -16.57666 -15.79770 -15.50114 -15.28791 -15.24302 -15.00280 -14.91589 -14.71571 -14.20241 -13.96674 -13.77183 -13.39354 -13.15178 -12.79609 -12.74587 -12.65086 -12.61913 -12.53899 -12.48915 -12.28694 -12.05003 -12.01235 -11.94496 -11.85181 -11.67500 -11.27480 -11.22561 -11.13500 -10.60786 -10.54699 -9.76494 -8.65951 -7.88762 -5.37997 1.48010 1.50811 1.57363 1.72135 2.11711 2.51177 3.26001 3.56834 3.60470 3.80565 3.92387 4.04744 4.23199 4.25099 4.30611 4.40546 4.43217 4.52842 4.57237 4.67035 4.68206 4.73527 4.80067 4.84519 4.88976 4.91287 4.95395 5.03561 5.06244 5.13866 5.16278 5.17523 5.24858 5.29362 5.32248 5.37033 5.46224 5.52965 5.60413 5.63886 5.68454 5.73697 6.34638 6.59633 7.08710 7.27916 7.78753 8.32235 9.16214 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.036613 B = 0.003676 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.571156 B = 7614.910624 C = 7890.530841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.060 4.060 3 H 0.050 0.950 4 C -0.129 4.129 5 C 0.503 3.497 6 O -0.587 6.587 7 N -0.606 5.606 8 C 0.102 3.898 9 C 0.171 3.829 10 N -0.609 5.609 11 C -0.265 4.265 12 H 0.076 0.924 13 C -0.051 4.051 14 N -0.937 5.937 15 Si 0.970 3.030 16 H -0.273 1.273 17 H -0.298 1.298 18 H -0.277 1.277 19 C 0.124 3.876 20 C 0.099 3.901 21 C -0.061 4.061 22 C -0.145 4.145 23 C -0.142 4.142 24 C -0.147 4.147 25 H 0.064 0.936 26 H 0.041 0.959 27 H 0.060 0.940 28 H 0.108 0.892 29 H 0.117 0.883 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.067 0.933 33 H -0.011 1.011 34 H 0.250 0.750 35 H 0.015 0.985 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.118 0.882 39 H 0.058 0.942 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.045 0.955 43 H 0.065 0.935 44 H 0.058 0.942 45 H 0.062 0.938 46 H 0.066 0.934 47 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.864 -8.743 -18.928 21.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.079 4.079 3 H 0.068 0.932 4 C -0.168 4.168 5 C 0.293 3.707 6 O -0.469 6.469 7 N -0.339 5.339 8 C -0.023 4.023 9 C 0.045 3.955 10 N -0.333 5.333 11 C -0.395 4.395 12 H 0.094 0.906 13 C -0.246 4.246 14 N -0.583 5.583 15 Si 0.798 3.202 16 H -0.198 1.198 17 H -0.225 1.225 18 H -0.203 1.203 19 C -0.002 4.002 20 C -0.024 4.024 21 C -0.061 4.061 22 C -0.202 4.202 23 C -0.199 4.199 24 C -0.204 4.204 25 H 0.083 0.917 26 H 0.060 0.940 27 H 0.079 0.921 28 H 0.126 0.874 29 H 0.135 0.865 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.008 0.992 34 H 0.059 0.941 35 H 0.033 0.967 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.136 0.864 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.064 0.936 43 H 0.084 0.916 44 H 0.077 0.923 45 H 0.080 0.920 46 H 0.085 0.915 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.140 -8.111 -18.865 21.168 hybrid contribution 0.244 0.577 1.465 1.593 sum -4.897 -7.533 -17.401 19.583 Atomic orbital electron populations 1.21979 0.95202 1.01911 1.01635 1.20851 0.96114 0.98301 0.92599 0.93174 1.21932 1.03816 1.00529 0.90515 1.21509 0.78433 0.85477 0.85257 1.90597 1.42735 1.26801 1.86750 1.48215 1.54610 1.25405 1.05621 1.22037 0.97780 0.96382 0.86056 1.20852 0.89461 0.87412 0.97821 1.44255 1.61659 1.25282 1.02057 1.19556 1.41176 0.92048 0.86724 0.90589 1.25874 1.00105 0.95935 1.02729 1.70183 1.53171 1.03191 1.31770 0.85302 0.78380 0.76840 0.79669 1.19809 1.22461 1.20266 1.21598 0.94391 0.96344 0.87835 1.22468 0.93079 0.84741 1.02148 1.20532 0.95636 0.96100 0.93804 1.21989 1.01332 0.94420 1.02466 1.21908 1.01295 0.99822 0.96867 1.21977 0.94378 1.01568 1.02506 0.91676 0.93961 0.92143 0.87431 0.86541 0.91972 0.91036 0.91439 0.99245 0.94082 0.96676 0.90111 0.90800 0.86379 0.92270 0.91829 0.91853 0.93551 0.91641 0.92269 0.91950 0.91509 0.93630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.42 8.23 71.98 0.59 -2.83 16 2 C -0.06 -1.31 1.40 -10.79 -0.02 -1.33 16 3 H 0.05 1.37 7.96 -2.38 -0.02 1.35 16 4 C -0.13 -2.89 2.80 29.85 0.08 -2.80 16 5 C 0.50 16.68 7.41 87.66 0.65 17.33 16 6 O -0.59 -23.76 13.37 -3.02 -0.04 -23.81 16 7 N -0.61 -21.27 2.95 -817.08 -2.41 -23.68 16 8 C 0.10 4.23 6.59 86.41 0.57 4.80 16 9 C 0.17 8.54 5.51 86.41 0.48 9.01 16 10 N -0.61 -29.83 2.96 -697.30 -2.06 -31.89 16 11 C -0.27 -14.08 9.57 84.03 0.80 -13.28 16 12 H 0.08 3.82 7.89 -2.91 -0.02 3.80 16 13 C -0.05 -2.80 4.91 84.86 0.42 -2.39 16 14 N -0.94 -55.52 11.20 21.65 0.24 -55.27 16 15 Si 0.97 44.00 29.59 68.60 2.03 46.03 16 16 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 17 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 18 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 19 C 0.12 4.70 6.70 86.58 0.58 5.28 16 20 C 0.10 2.90 6.53 86.58 0.56 3.47 16 21 C -0.06 -0.97 0.57 -52.18 -0.03 -1.00 16 22 C -0.15 -1.89 7.77 71.98 0.56 -1.33 16 23 C -0.14 -2.16 8.12 71.98 0.58 -1.57 16 24 C -0.15 -2.27 8.13 71.98 0.59 -1.68 16 25 H 0.06 1.25 6.43 -2.39 -0.02 1.23 16 26 H 0.04 1.25 5.95 -2.39 -0.01 1.24 16 27 H 0.06 1.24 6.43 -2.39 -0.02 1.22 16 28 H 0.11 2.15 5.76 -2.39 -0.01 2.13 16 29 H 0.12 2.04 6.47 -2.39 -0.02 2.02 16 30 H 0.06 2.51 8.14 -2.38 -0.02 2.49 16 31 H 0.07 3.06 6.99 -2.39 -0.02 3.04 16 32 H 0.07 3.76 6.00 -2.39 -0.01 3.75 16 33 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 34 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 35 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.08 2.80 7.93 -2.39 -0.02 2.78 16 37 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.12 2.39 5.91 -2.39 -0.01 2.38 16 39 H 0.06 0.78 6.43 -2.39 -0.02 0.76 16 40 H 0.06 0.70 8.14 -2.39 -0.02 0.69 16 41 H 0.06 0.76 6.54 -2.39 -0.02 0.74 16 42 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.06 0.89 6.43 -2.39 -0.02 0.87 16 45 H 0.06 0.92 6.32 -2.39 -0.02 0.90 16 46 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 47 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -67.43 346.65 5.12 -62.32 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: 0.93 Total: 14.62 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: 6.42 Total: 11.69 kcal Atomic # 7 Polarization: -106.62 SS G_CDS: -4.23 Total: -110.85 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: -0.04 Total: -23.81 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -67.43 5.12 -62.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104438121.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.560 kcal (2) G-P(sol) polarization free energy of solvation -67.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds