Wall clock time and date at job start Tue Mar 31 2020 05:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08992 * 109.47198 * 2 1 4 4 C 1.52997 * 109.46861 * 239.99996 * 2 1 3 5 5 C 1.50706 * 109.47069 * 64.99993 * 4 2 1 6 6 O 1.21276 * 120.00048 * 359.97438 * 5 4 2 7 7 N 1.34780 * 119.99718 * 179.97438 * 5 4 2 8 8 C 1.46961 * 120.59637 * 359.72317 * 7 5 4 9 9 C 1.53817 * 108.39740 * 124.75876 * 8 7 5 10 10 N 1.46965 * 108.57954 * 49.63594 * 9 8 7 11 11 C 1.36936 * 120.58941 * 124.62743 * 10 9 8 12 12 H 1.08005 * 119.99186 * 208.22556 * 11 10 9 13 13 C 1.38804 * 120.00548 * 28.22759 * 11 10 9 14 14 N 1.31618 * 119.99981 * 17.57899 * 13 11 10 15 15 Si 1.86796 * 120.00109 * 197.58132 * 13 11 10 16 16 H 1.48506 * 109.46855 * 90.00191 * 15 13 11 17 17 H 1.48501 * 109.47220 * 209.99791 * 15 13 11 18 18 H 1.48492 * 109.47378 * 329.99868 * 15 13 11 19 19 C 1.46968 * 118.81061 * 304.64816 * 10 9 8 20 20 C 1.46971 * 120.58980 * 179.97438 * 7 5 4 21 21 C 1.52998 * 109.47273 * 120.00231 * 2 1 3 22 22 C 1.53004 * 109.47025 * 59.99889 * 21 2 1 23 23 C 1.52997 * 109.47265 * 299.99953 * 21 2 1 24 24 C 1.52995 * 109.46965 * 179.97438 * 21 2 1 25 25 H 1.09000 * 109.47292 * 59.99595 * 1 2 3 26 26 H 1.09004 * 109.47546 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.47263 * 300.00064 * 1 2 3 28 28 H 1.08998 * 109.47529 * 184.99901 * 4 2 1 29 29 H 1.08999 * 109.47430 * 305.00338 * 4 2 1 30 30 H 1.08999 * 109.60532 * 244.53958 * 8 7 5 31 31 H 1.08995 * 109.61104 * 5.04957 * 8 7 5 32 32 H 1.09002 * 109.73809 * 289.84933 * 9 8 7 33 33 H 1.08997 * 109.67436 * 169.38949 * 9 8 7 34 34 H 0.97000 * 120.00335 * 180.02562 * 14 13 11 35 35 H 1.09002 * 109.60565 * 295.47970 * 19 10 9 36 36 H 1.09000 * 109.74819 * 175.06134 * 19 10 9 37 37 H 1.09007 * 109.61012 * 354.95305 * 20 7 5 38 38 H 1.09000 * 109.60478 * 115.28550 * 20 7 5 39 39 H 1.08999 * 109.47443 * 59.99843 * 22 21 2 40 40 H 1.09004 * 109.46972 * 299.99838 * 22 21 2 41 41 H 1.09002 * 109.46963 * 180.02562 * 22 21 2 42 42 H 1.09002 * 109.47621 * 179.97438 * 23 21 2 43 43 H 1.09004 * 109.47196 * 300.00287 * 23 21 2 44 44 H 1.09004 * 109.47311 * 59.99807 * 23 21 2 45 45 H 1.08997 * 109.47681 * 299.99845 * 24 21 2 46 46 H 1.08998 * 109.47084 * 60.00782 * 24 21 2 47 47 H 1.09009 * 109.47019 * 179.97438 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 1.6412 0.0571 -2.4766 6 8 1.0108 1.0869 -2.3633 7 7 1.9852 -0.3914 -3.7002 8 6 2.7541 -1.6345 -3.8523 9 6 1.9756 -2.5755 -4.7874 10 7 1.5937 -1.8269 -5.9930 11 6 1.9439 -2.2821 -7.2361 12 1 2.0864 -1.5828 -8.0468 13 6 2.1158 -3.6421 -7.4543 14 7 1.6213 -4.5132 -6.6006 15 14 3.0491 -4.2359 -8.9595 16 1 4.4920 -4.3589 -8.6306 17 1 2.5222 -5.5597 -9.3782 18 1 2.8749 -3.2613 -10.0663 19 6 0.8295 -0.5808 -5.8405 20 6 1.6027 0.3570 -4.9059 21 6 2.0400 -0.7213 1.2492 22 6 1.5300 -2.1638 1.2491 23 6 1.5301 -0.0001 2.4985 24 6 3.5700 -0.7218 1.2488 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 3.1262 -0.7995 -1.2057 29 1 1.6053 -1.7198 -1.2952 30 1 3.7298 -1.4106 -4.2837 31 1 2.8817 -2.1072 -2.8785 32 1 1.0800 -2.9378 -4.2827 33 1 2.6058 -3.4202 -5.0656 34 1 1.7417 -5.4636 -6.7528 35 1 -0.1477 -0.8012 -5.4109 36 1 0.7026 -0.1052 -6.8131 37 1 0.9697 1.1997 -4.6279 38 1 2.4979 0.7223 -5.4090 39 1 1.8932 -2.6776 0.3591 40 1 0.4400 -2.1638 1.2492 41 1 1.8930 -2.6775 2.1393 42 1 1.8930 -0.5142 3.3885 43 1 1.8934 1.0276 2.4985 44 1 0.4400 -0.0001 2.4985 45 1 3.9330 -1.2358 0.3588 46 1 3.9336 0.3057 1.2487 47 1 3.9334 -1.2353 2.1390 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104438125.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:06 Heat of formation + Delta-G solvation = -29.546449 kcal Electronic energy + Delta-G solvation = -23786.867114 eV Core-core repulsion = 20583.751769 eV Total energy + Delta-G solvation = -3203.115345 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.01968 -38.27882 -36.65658 -33.84566 -32.07036 -31.23307 -30.12898 -28.75461 -27.38520 -27.11445 -26.01596 -23.71916 -23.08015 -22.34829 -20.40831 -18.57693 -18.07812 -17.18026 -16.15627 -15.65947 -15.15592 -14.85362 -14.73377 -14.36455 -14.02465 -13.89893 -13.68051 -13.35996 -13.25866 -13.08468 -12.77910 -12.45253 -12.03915 -11.93107 -11.86733 -11.68876 -11.58502 -11.34491 -11.16043 -11.09464 -10.85574 -10.75278 -10.49967 -10.39634 -10.32770 -10.31689 -10.22525 -9.98547 -9.84482 -9.19071 -8.60424 -8.19781 -6.72801 -5.87580 -3.31858 3.06606 3.32942 3.40246 3.41284 3.51584 4.42804 4.62573 4.68871 4.75683 5.05835 5.14125 5.23458 5.29359 5.34172 5.45577 5.55131 5.58130 5.59930 5.67360 5.76433 5.79774 5.85584 5.87337 5.89786 5.92380 5.96474 5.99594 6.05830 6.12920 6.14471 6.19562 6.22022 6.33795 6.38016 6.44225 6.49201 6.65311 6.78725 6.94729 7.21421 7.44673 7.70690 7.98003 8.34017 8.64725 9.10282 9.72837 10.30046 11.20087 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027245 B = 0.004010 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.455069 B = 6981.456210 C = 7501.116274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.060 4.060 3 H 0.074 0.926 4 C -0.139 4.139 5 C 0.509 3.491 6 O -0.558 6.558 7 N -0.599 5.599 8 C 0.080 3.920 9 C 0.158 3.842 10 N -0.591 5.591 11 C -0.256 4.256 12 H 0.068 0.932 13 C 0.004 3.996 14 N -0.902 5.902 15 Si 0.904 3.096 16 H -0.287 1.287 17 H -0.291 1.291 18 H -0.278 1.278 19 C 0.132 3.868 20 C 0.095 3.905 21 C -0.066 4.066 22 C -0.147 4.147 23 C -0.141 4.141 24 C -0.145 4.145 25 H 0.074 0.926 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.023 0.977 33 H 0.100 0.900 34 H 0.255 0.745 35 H 0.023 0.977 36 H 0.065 0.935 37 H 0.081 0.919 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.051 0.949 42 H 0.051 0.949 43 H 0.053 0.947 44 H 0.058 0.942 45 H 0.058 0.942 46 H 0.053 0.947 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.464 5.620 15.098 16.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.079 4.079 3 H 0.093 0.907 4 C -0.178 4.178 5 C 0.298 3.702 6 O -0.438 6.438 7 N -0.331 5.331 8 C -0.044 4.044 9 C 0.031 3.969 10 N -0.314 5.314 11 C -0.385 4.385 12 H 0.085 0.915 13 C -0.195 4.195 14 N -0.547 5.547 15 Si 0.734 3.266 16 H -0.214 1.214 17 H -0.217 1.217 18 H -0.204 1.204 19 C 0.005 3.995 20 C -0.029 4.029 21 C -0.066 4.066 22 C -0.204 4.204 23 C -0.198 4.198 24 C -0.202 4.202 25 H 0.093 0.907 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.109 0.891 29 H 0.112 0.888 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.041 0.959 33 H 0.118 0.882 34 H 0.065 0.935 35 H 0.041 0.959 36 H 0.084 0.916 37 H 0.099 0.901 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.072 0.928 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.072 0.928 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.129 5.960 15.100 16.373 hybrid contribution 0.562 -0.577 -0.836 1.161 sum 2.692 5.384 14.264 15.482 Atomic orbital electron populations 1.22048 0.94901 1.01527 1.02760 1.20864 0.96420 0.99088 0.91558 0.90742 1.21873 1.02624 1.00510 0.92821 1.20652 0.79366 0.85528 0.84639 1.90586 1.41425 1.25403 1.86420 1.48105 1.54303 1.25086 1.05613 1.22750 0.95599 0.85370 1.00727 1.21256 0.96952 0.93196 0.85512 1.43982 1.61345 1.23447 1.02627 1.19228 1.40913 0.90395 0.87959 0.91458 1.25057 1.00133 0.96233 0.98088 1.70017 1.45686 1.01075 1.37879 0.86258 0.79806 0.77999 0.82521 1.21356 1.21721 1.20379 1.21278 0.93056 0.88236 0.96916 1.22157 0.99785 0.95295 0.85633 1.20579 0.95310 0.95679 0.95081 1.21998 1.01416 0.95324 1.01670 1.21901 1.01308 0.99994 0.96609 1.21956 0.94861 1.01714 1.01713 0.90677 0.93120 0.93036 0.89138 0.88848 0.91920 0.91031 0.95878 0.88243 0.93490 0.95946 0.91631 0.90092 0.92185 0.92244 0.92240 0.93027 0.93004 0.92831 0.92289 0.92259 0.92764 0.92859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.99 8.23 37.16 0.31 -1.69 16 2 C -0.06 -0.73 1.40 -90.62 -0.13 -0.86 16 3 H 0.07 1.00 7.95 -51.93 -0.41 0.59 16 4 C -0.14 -1.83 2.79 -27.88 -0.08 -1.91 16 5 C 0.51 8.74 7.41 -10.98 -0.08 8.66 16 6 O -0.56 -10.88 13.37 5.56 0.07 -10.81 16 7 N -0.60 -10.86 2.94 -172.24 -0.51 -11.36 16 8 C 0.08 1.42 6.54 -3.37 -0.02 1.40 16 9 C 0.16 3.54 5.54 -3.36 -0.02 3.53 16 10 N -0.59 -14.41 2.97 -171.79 -0.51 -14.92 16 11 C -0.26 -6.79 9.58 -15.06 -0.14 -6.93 16 12 H 0.07 1.76 7.89 -52.48 -0.41 1.35 16 13 C 0.00 0.10 4.90 -17.43 -0.09 0.01 16 14 N -0.90 -25.23 11.20 55.49 0.62 -24.61 16 15 Si 0.90 21.01 29.59 -169.99 -5.03 15.98 16 16 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 19 C 0.13 2.79 6.67 -3.62 -0.02 2.77 16 20 C 0.10 1.78 6.59 -3.62 -0.02 1.76 16 21 C -0.07 -0.65 0.57 -154.51 -0.09 -0.74 16 22 C -0.15 -1.41 7.77 37.16 0.29 -1.12 16 23 C -0.14 -1.27 8.12 37.16 0.30 -0.97 16 24 C -0.15 -1.33 8.13 37.16 0.30 -1.03 16 25 H 0.07 1.18 5.95 -51.93 -0.31 0.87 16 26 H 0.05 0.62 6.43 -51.93 -0.33 0.28 16 27 H 0.05 0.59 6.43 -51.93 -0.33 0.25 16 28 H 0.09 1.07 5.93 -51.93 -0.31 0.76 16 29 H 0.09 1.21 6.30 -51.93 -0.33 0.88 16 30 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.07 1.06 5.91 -51.93 -0.31 0.75 16 32 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.10 2.47 5.98 -51.93 -0.31 2.15 16 34 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 35 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 1.32 7.94 -51.93 -0.41 0.91 16 37 H 0.08 1.48 6.99 -51.92 -0.36 1.12 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 39 H 0.06 0.59 6.54 -51.93 -0.34 0.25 16 40 H 0.06 0.58 6.43 -51.93 -0.33 0.25 16 41 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.53 6.43 -51.93 -0.33 0.20 16 45 H 0.06 0.55 6.32 -51.93 -0.33 0.22 16 46 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.05 0.44 8.14 -51.92 -0.42 0.02 16 LS Contribution 346.65 15.07 5.22 5.22 Total: -1.00 -29.41 346.65 -7.73 -37.13 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -8.11 Total: 0.49 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: 0.51 Total: 2.86 kcal Atomic # 7 Polarization: -50.49 SS G_CDS: -0.39 Total: -50.88 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.07 Total: -10.81 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.03 Total: 15.98 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.41 -7.73 -37.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104438125.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.588 kcal (2) G-P(sol) polarization free energy of solvation -29.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds