Wall clock time and date at job start Tue Mar 31 2020 05:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08992 * 109.47198 * 2 1 4 4 C 1.52997 * 109.46861 * 239.99996 * 2 1 3 5 5 C 1.50706 * 109.47069 * 64.99993 * 4 2 1 6 6 O 1.21276 * 120.00048 * 359.97438 * 5 4 2 7 7 N 1.34780 * 119.99718 * 179.97438 * 5 4 2 8 8 C 1.46961 * 120.59637 * 359.72317 * 7 5 4 9 9 C 1.53817 * 108.39740 * 124.75876 * 8 7 5 10 10 N 1.46965 * 108.57954 * 49.63594 * 9 8 7 11 11 C 1.36936 * 120.58941 * 124.62743 * 10 9 8 12 12 H 1.08005 * 119.99186 * 208.22556 * 11 10 9 13 13 C 1.38804 * 120.00548 * 28.22759 * 11 10 9 14 14 N 1.31618 * 119.99981 * 17.57899 * 13 11 10 15 15 Si 1.86796 * 120.00109 * 197.58132 * 13 11 10 16 16 H 1.48506 * 109.46855 * 90.00191 * 15 13 11 17 17 H 1.48501 * 109.47220 * 209.99791 * 15 13 11 18 18 H 1.48492 * 109.47378 * 329.99868 * 15 13 11 19 19 C 1.46968 * 118.81061 * 304.64816 * 10 9 8 20 20 C 1.46971 * 120.58980 * 179.97438 * 7 5 4 21 21 C 1.52998 * 109.47273 * 120.00231 * 2 1 3 22 22 C 1.53004 * 109.47025 * 59.99889 * 21 2 1 23 23 C 1.52997 * 109.47265 * 299.99953 * 21 2 1 24 24 C 1.52995 * 109.46965 * 179.97438 * 21 2 1 25 25 H 1.09000 * 109.47292 * 59.99595 * 1 2 3 26 26 H 1.09004 * 109.47546 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.47263 * 300.00064 * 1 2 3 28 28 H 1.08998 * 109.47529 * 184.99901 * 4 2 1 29 29 H 1.08999 * 109.47430 * 305.00338 * 4 2 1 30 30 H 1.08999 * 109.60532 * 244.53958 * 8 7 5 31 31 H 1.08995 * 109.61104 * 5.04957 * 8 7 5 32 32 H 1.09002 * 109.73809 * 289.84933 * 9 8 7 33 33 H 1.08997 * 109.67436 * 169.38949 * 9 8 7 34 34 H 0.97000 * 120.00335 * 180.02562 * 14 13 11 35 35 H 1.09002 * 109.60565 * 295.47970 * 19 10 9 36 36 H 1.09000 * 109.74819 * 175.06134 * 19 10 9 37 37 H 1.09007 * 109.61012 * 354.95305 * 20 7 5 38 38 H 1.09000 * 109.60478 * 115.28550 * 20 7 5 39 39 H 1.08999 * 109.47443 * 59.99843 * 22 21 2 40 40 H 1.09004 * 109.46972 * 299.99838 * 22 21 2 41 41 H 1.09002 * 109.46963 * 180.02562 * 22 21 2 42 42 H 1.09002 * 109.47621 * 179.97438 * 23 21 2 43 43 H 1.09004 * 109.47196 * 300.00287 * 23 21 2 44 44 H 1.09004 * 109.47311 * 59.99807 * 23 21 2 45 45 H 1.08997 * 109.47681 * 299.99845 * 24 21 2 46 46 H 1.08998 * 109.47084 * 60.00782 * 24 21 2 47 47 H 1.09009 * 109.47019 * 179.97438 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 1.6412 0.0571 -2.4766 6 8 1.0108 1.0869 -2.3633 7 7 1.9852 -0.3914 -3.7002 8 6 2.7541 -1.6345 -3.8523 9 6 1.9756 -2.5755 -4.7874 10 7 1.5937 -1.8269 -5.9930 11 6 1.9439 -2.2821 -7.2361 12 1 2.0864 -1.5828 -8.0468 13 6 2.1158 -3.6421 -7.4543 14 7 1.6213 -4.5132 -6.6006 15 14 3.0491 -4.2359 -8.9595 16 1 4.4920 -4.3589 -8.6306 17 1 2.5222 -5.5597 -9.3782 18 1 2.8749 -3.2613 -10.0663 19 6 0.8295 -0.5808 -5.8405 20 6 1.6027 0.3570 -4.9059 21 6 2.0400 -0.7213 1.2492 22 6 1.5300 -2.1638 1.2491 23 6 1.5301 -0.0001 2.4985 24 6 3.5700 -0.7218 1.2488 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 3.1262 -0.7995 -1.2057 29 1 1.6053 -1.7198 -1.2952 30 1 3.7298 -1.4106 -4.2837 31 1 2.8817 -2.1072 -2.8785 32 1 1.0800 -2.9378 -4.2827 33 1 2.6058 -3.4202 -5.0656 34 1 1.7417 -5.4636 -6.7528 35 1 -0.1477 -0.8012 -5.4109 36 1 0.7026 -0.1052 -6.8131 37 1 0.9697 1.1997 -4.6279 38 1 2.4979 0.7223 -5.4090 39 1 1.8932 -2.6776 0.3591 40 1 0.4400 -2.1638 1.2492 41 1 1.8930 -2.6775 2.1393 42 1 1.8930 -0.5142 3.3885 43 1 1.8934 1.0276 2.4985 44 1 0.4400 -0.0001 2.4985 45 1 3.9330 -1.2358 0.3588 46 1 3.9336 0.3057 1.2487 47 1 3.9334 -1.2353 2.1390 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104438125.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:06 Heat of formation + Delta-G solvation = -45.187999 kcal Electronic energy + Delta-G solvation = -23787.545383 eV Core-core repulsion = 20583.751769 eV Total energy + Delta-G solvation = -3203.793614 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.32014 -39.38967 -38.20311 -35.58483 -33.47292 -32.70363 -31.75031 -29.83039 -28.59881 -28.11217 -27.13750 -25.41418 -24.55114 -23.62269 -21.98714 -20.09922 -19.04169 -18.69721 -17.74786 -17.08556 -16.61968 -16.46666 -15.83489 -15.55229 -15.45971 -15.11961 -15.03409 -14.88889 -14.71938 -14.20791 -13.95731 -13.78784 -13.36055 -13.21540 -12.80399 -12.74154 -12.66949 -12.64235 -12.56976 -12.49248 -12.21953 -12.06423 -12.01862 -11.97445 -11.85492 -11.65689 -11.28176 -11.22988 -11.14721 -10.65127 -10.50789 -9.77737 -8.65785 -7.89036 -5.37345 1.49152 1.50732 1.59260 1.70246 2.11007 2.51568 3.25276 3.55927 3.59779 3.80178 3.91277 4.03648 4.22239 4.24310 4.28027 4.39135 4.40103 4.54633 4.58026 4.66467 4.67734 4.72876 4.76463 4.81940 4.83961 4.88997 4.94049 5.02055 5.06378 5.11866 5.14786 5.16456 5.23444 5.28139 5.31331 5.34995 5.52050 5.54663 5.60907 5.63220 5.66132 5.71800 6.35176 6.56154 7.10673 7.25598 7.78070 8.31817 9.15964 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027245 B = 0.004010 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.455069 B = 6981.456210 C = 7501.116274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.056 4.056 3 H 0.061 0.939 4 C -0.133 4.133 5 C 0.506 3.494 6 O -0.582 6.582 7 N -0.606 5.606 8 C 0.096 3.904 9 C 0.163 3.837 10 N -0.609 5.609 11 C -0.268 4.268 12 H 0.068 0.932 13 C -0.043 4.043 14 N -0.932 5.932 15 Si 0.969 3.031 16 H -0.281 1.281 17 H -0.296 1.296 18 H -0.272 1.272 19 C 0.133 3.867 20 C 0.105 3.895 21 C -0.061 4.061 22 C -0.148 4.148 23 C -0.140 4.140 24 C -0.146 4.146 25 H 0.042 0.958 26 H 0.055 0.945 27 H 0.063 0.937 28 H 0.112 0.888 29 H 0.101 0.899 30 H 0.068 0.932 31 H 0.107 0.893 32 H -0.001 1.001 33 H 0.075 0.925 34 H 0.252 0.748 35 H 0.006 0.994 36 H 0.070 0.930 37 H 0.084 0.916 38 H 0.068 0.932 39 H 0.056 0.944 40 H 0.054 0.946 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.052 0.948 44 H 0.056 0.944 45 H 0.059 0.941 46 H 0.052 0.948 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.850 5.700 16.299 17.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.075 4.075 3 H 0.079 0.921 4 C -0.172 4.172 5 C 0.297 3.703 6 O -0.464 6.464 7 N -0.338 5.338 8 C -0.028 4.028 9 C 0.036 3.964 10 N -0.332 5.332 11 C -0.398 4.398 12 H 0.085 0.915 13 C -0.239 4.239 14 N -0.577 5.577 15 Si 0.797 3.203 16 H -0.208 1.208 17 H -0.223 1.223 18 H -0.197 1.197 19 C 0.007 3.993 20 C -0.019 4.019 21 C -0.061 4.061 22 C -0.205 4.205 23 C -0.198 4.198 24 C -0.203 4.203 25 H 0.061 0.939 26 H 0.074 0.926 27 H 0.082 0.918 28 H 0.130 0.870 29 H 0.119 0.881 30 H 0.087 0.913 31 H 0.125 0.875 32 H 0.017 0.983 33 H 0.094 0.906 34 H 0.062 0.938 35 H 0.024 0.976 36 H 0.089 0.911 37 H 0.102 0.898 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.071 0.929 44 H 0.075 0.925 45 H 0.078 0.922 46 H 0.072 0.928 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.519 6.065 16.317 17.760 hybrid contribution 0.040 -0.560 -1.196 1.322 sum 3.559 5.505 15.121 16.481 Atomic orbital electron populations 1.21993 0.95627 1.01499 1.01770 1.20834 0.95758 0.98604 0.92296 0.92058 1.21936 1.04006 1.00114 0.91141 1.21350 0.78404 0.85397 0.85172 1.90583 1.42311 1.26725 1.86755 1.48202 1.54641 1.25134 1.05863 1.22540 0.94576 0.84320 1.01327 1.21111 0.95997 0.93592 0.85681 1.44252 1.62044 1.24278 1.02641 1.19523 1.40603 0.90712 0.88937 0.91468 1.25766 1.01029 0.96304 1.00822 1.70159 1.46954 1.01027 1.39597 0.85255 0.78513 0.77035 0.79529 1.20766 1.22292 1.19665 1.21326 0.92435 0.87730 0.97857 1.21946 0.99732 0.94622 0.85591 1.20535 0.95940 0.95593 0.94063 1.22008 1.01192 0.95096 1.02191 1.21897 1.01194 1.00027 0.96647 1.21962 0.94015 1.01902 1.02384 0.93856 0.92644 0.91783 0.86981 0.88136 0.91325 0.87513 0.98277 0.90647 0.93847 0.97551 0.91127 0.89810 0.91404 0.92506 0.92658 0.91758 0.91715 0.92924 0.92507 0.92171 0.92842 0.91640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.77 8.23 71.98 0.59 -3.18 16 2 C -0.06 -1.27 1.40 -10.80 -0.02 -1.29 16 3 H 0.06 1.57 7.95 -2.39 -0.02 1.55 16 4 C -0.13 -3.24 2.79 29.85 0.08 -3.15 16 5 C 0.51 16.78 7.41 87.66 0.65 17.43 16 6 O -0.58 -22.46 13.37 -3.02 -0.04 -22.50 16 7 N -0.61 -21.29 2.94 -817.23 -2.40 -23.69 16 8 C 0.10 3.28 6.54 86.57 0.57 3.84 16 9 C 0.16 7.36 5.54 86.57 0.48 7.84 16 10 N -0.61 -29.89 2.97 -697.43 -2.07 -31.96 16 11 C -0.27 -14.29 9.58 84.03 0.80 -13.49 16 12 H 0.07 3.51 7.89 -2.91 -0.02 3.49 16 13 C -0.04 -2.32 4.90 84.86 0.42 -1.91 16 14 N -0.93 -52.85 11.20 21.65 0.24 -52.60 16 15 Si 0.97 43.21 29.59 68.60 2.03 45.24 16 16 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 17 H -0.30 -13.39 7.11 99.48 0.71 -12.68 16 18 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 19 C 0.13 5.66 6.67 86.40 0.58 6.24 16 20 C 0.11 3.88 6.59 86.40 0.57 4.45 16 21 C -0.06 -1.06 0.57 -52.18 -0.03 -1.09 16 22 C -0.15 -2.46 7.77 71.98 0.56 -1.90 16 23 C -0.14 -2.19 8.12 71.98 0.58 -1.61 16 24 C -0.15 -2.24 8.13 71.98 0.59 -1.65 16 25 H 0.04 1.36 5.95 -2.39 -0.01 1.34 16 26 H 0.05 1.30 6.43 -2.38 -0.02 1.28 16 27 H 0.06 1.39 6.43 -2.38 -0.02 1.38 16 28 H 0.11 2.29 5.93 -2.39 -0.01 2.27 16 29 H 0.10 2.37 6.30 -2.39 -0.02 2.36 16 30 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.11 2.87 5.91 -2.39 -0.01 2.85 16 32 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 33 H 0.08 3.79 5.98 -2.39 -0.01 3.77 16 34 H 0.25 13.84 8.31 -92.71 -0.77 13.07 16 35 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 36 H 0.07 2.87 7.94 -2.39 -0.02 2.85 16 37 H 0.08 3.04 6.99 -2.38 -0.02 3.02 16 38 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 39 H 0.06 0.97 6.54 -2.39 -0.02 0.96 16 40 H 0.05 0.96 6.43 -2.39 -0.02 0.95 16 41 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.06 0.91 6.43 -2.39 -0.02 0.89 16 45 H 0.06 0.91 6.32 -2.39 -0.02 0.90 16 46 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 Total: -1.00 -63.29 346.65 5.11 -58.18 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: 0.93 Total: 16.81 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: 6.42 Total: 10.53 kcal Atomic # 7 Polarization: -104.03 SS G_CDS: -4.23 Total: -108.26 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: -0.04 Total: -22.50 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -63.29 5.11 -58.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104438125.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.994 kcal (2) G-P(sol) polarization free energy of solvation -63.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds