Wall clock time and date at job start Tue Mar 31 2020 05:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50697 * 109.47239 * 120.00336 * 2 1 3 5 5 O 1.21277 * 120.00304 * 120.00026 * 4 2 1 6 6 N 1.34778 * 119.99637 * 299.99654 * 4 2 1 7 7 C 1.46495 * 120.00557 * 0.02562 * 6 4 2 8 8 C 1.46505 * 119.99943 * 180.02562 * 6 4 2 9 9 C 1.50703 * 109.46974 * 89.99989 * 8 6 4 10 10 H 1.07995 * 119.99996 * 0.02562 * 9 8 6 11 11 C 1.37883 * 119.99725 * 180.02562 * 9 8 6 12 12 N 1.31509 * 119.99933 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 119.99867 * 180.02562 * 11 9 8 14 14 H 1.48505 * 109.47032 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47193 * 119.99672 * 13 11 9 16 16 H 1.48499 * 109.46974 * 239.99946 * 13 11 9 17 17 N 1.46902 * 109.46626 * 240.00176 * 2 1 3 18 18 C 1.46849 * 111.00077 * 306.04212 * 17 2 1 19 19 C 1.53039 * 109.52388 * 174.16592 * 18 17 2 20 20 C 1.53120 * 109.27925 * 59.17662 * 19 18 17 21 21 C 1.53115 * 109.16276 * 302.34913 * 20 19 18 22 22 C 1.53002 * 109.50296 * 177.59413 * 21 20 19 23 23 C 1.52998 * 109.50275 * 297.71122 * 21 20 19 24 24 C 1.46847 * 110.99731 * 181.83855 * 17 2 1 25 25 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 26 26 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 27 27 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47310 * 89.99453 * 7 6 4 29 29 H 1.08995 * 109.47421 * 210.00247 * 7 6 4 30 30 H 1.09000 * 109.46822 * 330.00064 * 7 6 4 31 31 H 1.09002 * 109.47489 * 210.00168 * 8 6 4 32 32 H 1.08999 * 109.47123 * 329.99853 * 8 6 4 33 33 H 0.97001 * 119.99860 * 180.02562 * 12 11 9 34 34 H 1.09005 * 109.46374 * 294.18074 * 18 17 2 35 35 H 1.08998 * 109.46243 * 54.16076 * 18 17 2 36 36 H 1.09001 * 109.50296 * 179.12345 * 19 18 17 37 37 H 1.09005 * 109.49872 * 299.19882 * 19 18 17 38 38 H 1.09007 * 109.51949 * 62.25504 * 20 19 18 39 39 H 1.08995 * 109.52436 * 182.37509 * 20 19 18 40 40 H 1.08993 * 109.47018 * 59.99717 * 22 21 20 41 41 H 1.09006 * 109.47137 * 180.02562 * 22 21 20 42 42 H 1.09006 * 109.46804 * 299.99961 * 22 21 20 43 43 H 1.08996 * 109.47026 * 60.00270 * 23 21 20 44 44 H 1.09002 * 109.47056 * 179.97438 * 23 21 20 45 45 H 1.09000 * 109.46990 * 299.99996 * 23 21 20 46 46 H 1.08998 * 109.46008 * 305.85393 * 24 17 2 47 47 H 1.08999 * 109.46841 * 65.81965 * 24 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.7297 -1.6965 1.1191 6 7 1.7068 -0.2500 2.4545 7 6 0.8642 0.9408 2.5890 8 6 2.1956 -0.9403 3.6507 9 6 3.5231 -0.3562 4.0605 10 1 3.9587 0.4489 3.4876 11 6 4.1812 -0.8498 5.1670 12 7 3.6504 -1.8299 5.8650 13 14 5.8262 -0.1254 5.6755 14 1 6.2025 0.9584 4.7325 15 1 5.7200 0.4281 7.0494 16 1 6.8642 -1.1870 5.6484 17 7 2.0196 -0.6925 -1.1995 18 6 1.4345 -2.0350 -1.3078 19 6 1.8506 -2.6686 -2.6373 20 6 3.3782 -2.7505 -2.7020 21 6 3.9643 -1.3455 -2.5383 22 6 5.4922 -1.4257 -2.5418 23 6 3.4960 -0.4588 -3.6939 24 6 3.4869 -0.7503 -1.2117 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.1837 0.6426 2.6225 29 1 1.1220 1.4664 3.5085 30 1 1.0273 1.5995 1.7361 31 1 1.4778 -0.8151 4.4613 32 1 2.3171 -2.0015 3.4336 33 1 4.1133 -2.1768 6.6436 34 1 1.7898 -2.6537 -0.4837 35 1 0.3478 -1.9621 -1.2648 36 1 1.4289 -3.6710 -2.7104 37 1 1.4830 -2.0581 -3.4621 38 1 3.7428 -3.3930 -1.9005 39 1 3.6805 -3.1624 -3.6649 40 1 5.8314 -1.8529 -3.4854 41 1 5.9089 -0.4253 -2.4248 42 1 5.8248 -2.0562 -1.7171 43 1 2.4076 -0.4010 -3.6894 44 1 3.9131 0.5414 -3.5766 45 1 3.8333 -0.8851 -4.6387 46 1 3.8909 0.2557 -1.0987 47 1 3.8327 -1.3749 -0.3881 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112702232.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:42 Heat of formation + Delta-G solvation = -32.652807 kcal Electronic energy + Delta-G solvation = -24365.535229 eV Core-core repulsion = 21162.285182 eV Total energy + Delta-G solvation = -3203.250047 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.34868 -38.33241 -35.18016 -34.80382 -32.72749 -32.00703 -30.14258 -27.66678 -27.09405 -26.37278 -26.04449 -24.30593 -23.42045 -22.12983 -20.70756 -18.42312 -18.21504 -16.60457 -16.24827 -16.10219 -15.11333 -14.85753 -14.72978 -14.44153 -14.04484 -13.97069 -13.57207 -13.39756 -12.88525 -12.79966 -12.55188 -12.28931 -12.09697 -11.98340 -11.86515 -11.64272 -11.50907 -11.30381 -11.18414 -11.05571 -10.90712 -10.86033 -10.60361 -10.48082 -10.32436 -10.16131 -9.96573 -9.93488 -9.62192 -9.44524 -8.46144 -7.64065 -7.59038 -6.06562 -4.11330 3.27577 3.33893 3.36553 3.41315 3.98368 4.12752 4.42983 4.83836 4.95491 5.01569 5.14345 5.22556 5.28104 5.34861 5.40319 5.53865 5.57652 5.60628 5.71250 5.77479 5.79453 5.83386 5.88163 5.98754 5.99179 6.02778 6.07252 6.10284 6.12847 6.21592 6.24527 6.30529 6.35547 6.45948 6.54405 6.57188 6.73703 7.01306 7.29388 7.38172 7.42740 7.53726 7.89876 8.21478 8.40835 8.88164 9.07480 9.53990 11.01480 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018061 B = 0.005310 C = 0.004588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.955362 B = 5271.622278 C = 6100.935202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.061 3.939 3 H 0.100 0.900 4 C 0.479 3.521 5 O -0.538 6.538 6 N -0.599 5.599 7 C 0.081 3.919 8 C 0.244 3.756 9 C -0.524 4.524 10 H 0.056 0.944 11 C 0.061 3.939 12 N -0.895 5.895 13 Si 0.897 3.103 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.283 1.283 17 N -0.507 5.507 18 C 0.036 3.964 19 C -0.113 4.113 20 C -0.108 4.108 21 C -0.059 4.059 22 C -0.140 4.140 23 C -0.131 4.131 24 C 0.043 3.957 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.060 0.940 28 H 0.048 0.952 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.030 0.970 32 H 0.042 0.958 33 H 0.263 0.737 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.056 0.944 40 H 0.052 0.948 41 H 0.053 0.947 42 H 0.056 0.944 43 H 0.068 0.932 44 H 0.047 0.953 45 H 0.041 0.959 46 H 0.061 0.939 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.509 3.613 -16.188 17.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.052 4.052 3 H 0.118 0.882 4 C 0.264 3.736 5 O -0.417 6.417 6 N -0.331 5.331 7 C -0.063 4.063 8 C 0.125 3.875 9 C -0.563 4.563 10 H 0.075 0.925 11 C -0.141 4.141 12 N -0.534 5.534 13 Si 0.725 3.275 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.209 1.209 17 N -0.230 5.230 18 C -0.091 4.091 19 C -0.150 4.150 20 C -0.146 4.146 21 C -0.059 4.059 22 C -0.198 4.198 23 C -0.188 4.188 24 C -0.084 4.084 25 H 0.094 0.906 26 H 0.087 0.913 27 H 0.079 0.921 28 H 0.066 0.934 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.048 0.952 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.087 0.913 44 H 0.066 0.934 45 H 0.060 0.940 46 H 0.079 0.921 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.269 3.250 -16.476 17.601 hybrid contribution 1.224 0.042 1.235 1.739 sum -4.046 3.292 -15.241 16.109 Atomic orbital electron populations 1.22103 0.92904 1.02939 1.03157 1.21809 0.96779 0.98934 0.87642 0.88245 1.21609 0.81165 0.85507 0.85292 1.90548 1.38257 1.27136 1.85792 1.48279 1.49193 1.27981 1.07629 1.21794 0.93778 0.88215 1.02485 1.19274 0.94184 0.93687 0.80389 1.21448 1.04797 1.18910 1.11142 0.92542 1.24936 0.97939 0.94955 0.96279 1.69941 1.38942 1.26138 1.18360 0.86457 0.83770 0.79068 0.78225 1.19821 1.20921 1.20876 1.62442 1.07930 1.18471 1.34141 1.22318 0.98940 0.89970 0.97892 1.21569 0.95907 0.99758 0.97791 1.21613 0.95532 0.96305 1.01149 1.20528 0.94619 0.95265 0.95528 1.21827 0.94873 1.01691 1.01436 1.21789 1.02273 0.98502 0.96252 1.22478 0.87198 1.01130 0.97590 0.90631 0.91314 0.92118 0.93392 0.90943 0.92210 0.95174 0.94003 0.92780 0.92000 0.91262 0.92194 0.91536 0.91985 0.92523 0.92913 0.92814 0.92533 0.91341 0.93434 0.93979 0.92061 0.89986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 8.41 37.16 0.31 -1.58 16 2 C 0.06 0.93 2.07 -68.86 -0.14 0.79 16 3 H 0.10 1.44 7.40 -51.93 -0.38 1.06 16 4 C 0.48 9.73 6.49 -10.99 -0.07 9.66 16 5 O -0.54 -12.96 11.20 5.56 0.06 -12.90 16 6 N -0.60 -12.56 2.86 -182.95 -0.52 -13.08 16 7 C 0.08 1.27 8.80 59.84 0.53 1.80 16 8 C 0.24 6.39 5.16 -5.19 -0.03 6.36 16 9 C -0.52 -14.89 9.39 -34.44 -0.32 -15.21 16 10 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 11 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 12 N -0.89 -26.69 13.29 55.43 0.74 -25.96 16 13 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 14 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 15 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 16 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 17 N -0.51 -7.60 3.98 -228.07 -0.91 -8.51 16 18 C 0.04 0.54 4.72 -3.83 -0.02 0.52 16 19 C -0.11 -1.41 5.74 -26.65 -0.15 -1.56 16 20 C -0.11 -1.40 4.79 -26.61 -0.13 -1.53 16 21 C -0.06 -0.78 0.77 -154.43 -0.12 -0.90 16 22 C -0.14 -1.76 8.48 37.16 0.32 -1.44 16 23 C -0.13 -1.53 8.04 37.16 0.30 -1.23 16 24 C 0.04 0.70 3.69 -3.83 -0.01 0.68 16 25 H 0.08 0.86 4.53 -51.93 -0.24 0.63 16 26 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.79 6.20 -51.93 -0.32 0.46 16 28 H 0.05 0.64 6.95 -51.93 -0.36 0.28 16 29 H 0.07 1.17 8.07 -51.93 -0.42 0.75 16 30 H 0.06 0.77 6.01 -51.93 -0.31 0.46 16 31 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 32 H 0.04 1.24 7.42 -51.93 -0.39 0.85 16 33 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 34 H 0.06 1.14 6.00 -51.93 -0.31 0.83 16 35 H 0.07 0.94 5.87 -51.93 -0.30 0.63 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.78 6.59 -51.93 -0.34 0.43 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.07 0.83 6.01 -51.93 -0.31 0.52 16 44 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.06 0.98 8.12 -51.93 -0.42 0.56 16 47 H 0.08 1.65 5.36 -51.93 -0.28 1.37 16 LS Contribution 346.20 15.07 5.22 5.22 Total: -1.00 -31.54 346.20 -8.23 -39.77 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -8.16 Total: 0.51 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: 0.36 Total: -2.00 kcal Atomic # 7 Polarization: -46.85 SS G_CDS: -0.69 Total: -47.55 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: 0.06 Total: -12.90 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.54 -8.23 -39.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112702232.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.120 kcal (2) G-P(sol) polarization free energy of solvation -31.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds