Wall clock time and date at job start Tue Mar 31 2020 05:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47056 * 2 1 4 4 C 1.50702 * 109.46985 * 240.00134 * 2 1 3 5 5 O 1.21282 * 119.99840 * 265.90083 * 4 2 1 6 6 N 1.34773 * 120.00054 * 85.90809 * 4 2 1 7 7 C 1.46496 * 119.99949 * 4.62549 * 6 4 2 8 8 C 1.46501 * 120.00167 * 184.63094 * 6 4 2 9 9 C 1.50700 * 109.46943 * 270.00303 * 8 6 4 10 10 H 1.08002 * 120.00378 * 359.97438 * 9 8 6 11 11 C 1.37876 * 119.99852 * 179.97438 * 9 8 6 12 12 N 1.31513 * 120.00260 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00088 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.47229 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.47244 * 119.99632 * 13 11 9 16 16 H 1.48498 * 109.47654 * 240.00461 * 13 11 9 17 17 N 1.46896 * 109.46918 * 119.99748 * 2 1 3 18 18 C 1.46851 * 110.99836 * 173.77168 * 17 2 1 19 19 C 1.53039 * 109.51997 * 174.15969 * 18 17 2 20 20 C 1.53118 * 109.27634 * 59.18596 * 19 18 17 21 21 C 1.53112 * 109.16327 * 302.34278 * 20 19 18 22 22 C 1.53005 * 109.50841 * 177.59607 * 21 20 19 23 23 C 1.53001 * 109.50323 * 297.67426 * 21 20 19 24 24 C 1.46854 * 111.00025 * 49.56970 * 17 2 1 25 25 H 1.09000 * 109.47232 * 293.92839 * 1 2 3 26 26 H 1.09006 * 109.46800 * 53.92694 * 1 2 3 27 27 H 1.09008 * 109.47111 * 173.92346 * 1 2 3 28 28 H 1.09001 * 109.47301 * 85.02367 * 7 6 4 29 29 H 1.09000 * 109.47223 * 205.01397 * 7 6 4 30 30 H 1.09000 * 109.47764 * 325.01731 * 7 6 4 31 31 H 1.09005 * 109.46923 * 29.99495 * 8 6 4 32 32 H 1.08993 * 109.47220 * 149.99805 * 8 6 4 33 33 H 0.96999 * 119.99959 * 180.02562 * 12 11 9 34 34 H 1.08990 * 109.46353 * 294.17875 * 18 17 2 35 35 H 1.09001 * 109.45643 * 54.15370 * 18 17 2 36 36 H 1.09004 * 109.50069 * 179.12251 * 19 18 17 37 37 H 1.08996 * 109.50771 * 299.24558 * 19 18 17 38 38 H 1.09007 * 109.52582 * 62.24630 * 20 19 18 39 39 H 1.09000 * 109.52371 * 182.37370 * 20 19 18 40 40 H 1.09000 * 109.46735 * 59.99505 * 22 21 20 41 41 H 1.09001 * 109.46888 * 179.97438 * 22 21 20 42 42 H 1.08998 * 109.46928 * 299.99796 * 22 21 20 43 43 H 1.09004 * 109.46983 * 59.99954 * 23 21 20 44 44 H 1.09003 * 109.47633 * 179.97438 * 23 21 20 45 45 H 1.08999 * 109.47064 * 300.00041 * 23 21 20 46 46 H 1.09003 * 109.45852 * 305.85367 * 24 17 2 47 47 H 1.08996 * 109.46400 * 65.81895 * 24 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.3052 -1.8910 -1.1801 6 7 2.1784 -0.0337 -2.3868 7 6 1.9465 1.4123 -2.4236 8 6 2.5691 -0.7442 -3.6070 9 6 4.0718 -0.7606 -3.7195 10 1 4.6755 -0.2886 -2.9584 11 6 4.6760 -1.3782 -4.7940 12 7 3.9409 -1.9533 -5.7205 13 14 6.5386 -1.3979 -4.9337 14 1 7.1299 -0.6881 -3.7710 15 1 7.0188 -2.8030 -4.9516 16 1 6.9482 -0.7188 -6.1892 17 7 2.0196 -0.6924 1.1994 18 6 3.4800 -0.8422 1.1614 19 6 3.9681 -1.4337 2.4858 20 6 3.3024 -2.7947 2.7074 21 6 1.7816 -2.6184 2.6944 22 6 1.1077 -3.9825 2.8554 23 6 1.3636 -1.7030 3.8470 24 6 1.3568 -1.9925 1.3641 25 1 -0.3634 0.4168 0.9393 26 1 -0.3633 0.6052 -0.8307 27 1 -0.3634 -1.0220 -0.1088 28 1 2.8559 1.9339 -2.1253 29 1 1.6720 1.7107 -3.4354 30 1 1.1390 1.6685 -1.7377 31 1 2.1966 -1.7678 -3.5665 32 1 2.1453 -0.2374 -4.4740 33 1 4.3661 -2.3881 -6.4762 34 1 3.7556 -1.5072 0.3431 35 1 3.9411 0.1334 1.0075 36 1 5.0503 -1.5592 2.4513 37 1 3.7048 -0.7624 3.3031 38 1 3.5967 -3.4782 1.9108 39 1 3.6148 -3.2006 3.6695 40 1 1.4133 -4.4294 3.8014 41 1 0.0250 -3.8562 2.8465 42 1 1.4046 -4.6337 2.0332 43 1 1.8428 -0.7309 3.7310 44 1 0.2808 -1.5775 3.8371 45 1 1.6694 -2.1483 4.7937 46 1 0.2758 -1.8523 1.3573 47 1 1.6424 -2.6521 0.5447 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112702234.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:44 Heat of formation + Delta-G solvation = -40.194087 kcal Electronic energy + Delta-G solvation = -24373.876809 eV Core-core repulsion = 21170.299748 eV Total energy + Delta-G solvation = -3203.577062 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.32473 -38.32839 -35.16552 -34.59618 -32.74424 -32.35481 -29.71948 -27.79665 -27.13288 -26.60720 -25.82320 -24.73059 -23.30141 -21.50327 -21.08588 -18.51883 -18.13600 -16.60841 -16.32671 -16.14382 -14.98222 -14.78490 -14.62146 -14.33049 -14.24120 -13.98341 -13.55419 -13.28582 -13.10563 -12.80333 -12.35275 -12.18109 -12.09490 -12.00982 -11.85477 -11.77885 -11.60496 -11.38673 -11.22487 -11.13025 -10.94837 -10.79756 -10.66098 -10.59886 -10.34520 -10.16238 -10.01831 -9.90501 -9.60969 -9.42865 -8.44985 -7.68500 -7.59500 -6.05428 -4.09795 3.28314 3.33989 3.36820 3.41486 3.98277 4.12884 4.44010 4.81807 4.93993 4.99046 5.12423 5.24075 5.29402 5.35871 5.39261 5.54284 5.58647 5.60178 5.62334 5.74606 5.77097 5.84132 5.92917 5.94128 5.96235 6.03402 6.05576 6.07410 6.14330 6.19659 6.24335 6.25499 6.31597 6.43471 6.50637 6.52507 6.70977 7.01571 7.27740 7.36218 7.41110 7.54789 7.90759 8.22619 8.40924 8.89315 9.08044 9.55308 11.02660 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019534 B = 0.005155 C = 0.004625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.044706 B = 5430.096544 C = 6053.069415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.059 3.941 3 H 0.097 0.903 4 C 0.480 3.520 5 O -0.538 6.538 6 N -0.601 5.601 7 C 0.083 3.917 8 C 0.245 3.755 9 C -0.522 4.522 10 H 0.056 0.944 11 C 0.060 3.940 12 N -0.896 5.896 13 Si 0.897 3.103 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.283 1.283 17 N -0.507 5.507 18 C 0.039 3.961 19 C -0.112 4.112 20 C -0.109 4.109 21 C -0.061 4.061 22 C -0.140 4.140 23 C -0.131 4.131 24 C 0.045 3.955 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.048 0.952 29 H 0.069 0.931 30 H 0.056 0.944 31 H 0.040 0.960 32 H 0.031 0.969 33 H 0.262 0.738 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.061 0.939 39 H 0.057 0.943 40 H 0.052 0.948 41 H 0.052 0.948 42 H 0.055 0.945 43 H 0.068 0.932 44 H 0.047 0.953 45 H 0.041 0.959 46 H 0.069 0.931 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.530 4.087 16.142 17.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.053 4.053 3 H 0.115 0.885 4 C 0.266 3.734 5 O -0.416 6.416 6 N -0.333 5.333 7 C -0.061 4.061 8 C 0.126 3.874 9 C -0.561 4.561 10 H 0.074 0.926 11 C -0.141 4.141 12 N -0.535 5.535 13 Si 0.725 3.275 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.209 1.209 17 N -0.231 5.231 18 C -0.089 4.089 19 C -0.150 4.150 20 C -0.147 4.147 21 C -0.061 4.061 22 C -0.198 4.198 23 C -0.188 4.188 24 C -0.083 4.083 25 H 0.090 0.910 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.066 0.934 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.058 0.942 32 H 0.048 0.952 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.087 0.913 44 H 0.066 0.934 45 H 0.060 0.940 46 H 0.087 0.913 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.487 3.661 16.380 17.994 hybrid contribution 1.354 -0.394 -1.060 1.764 sum -5.133 3.267 15.320 16.484 Atomic orbital electron populations 1.21806 0.92702 1.02734 1.02472 1.21901 0.96826 0.98947 0.87644 0.88510 1.21523 0.78946 0.87938 0.85042 1.90590 1.51083 1.16129 1.83825 1.48293 1.66226 1.07758 1.11000 1.21669 0.99872 0.82167 1.02369 1.19289 0.95421 0.93008 0.79722 1.21437 0.91659 1.35698 1.07257 0.92582 1.24932 0.98473 0.95116 0.95612 1.69939 1.35217 1.36713 1.11628 0.86461 0.85403 0.77854 0.77823 1.19834 1.20890 1.20940 1.62490 1.05622 1.21268 1.33693 1.22247 0.87629 1.00875 0.98101 1.21555 0.99121 0.96715 0.97561 1.21624 0.94547 0.97342 1.01169 1.20556 0.95090 0.94869 0.95610 1.21825 1.00167 0.96386 1.01390 1.21785 1.00606 1.00205 0.96213 1.22468 0.98262 0.90559 0.96982 0.91026 0.91793 0.91954 0.93354 0.91182 0.92526 0.94160 0.95153 0.92804 0.91988 0.91646 0.92009 0.91447 0.91986 0.92450 0.92885 0.92850 0.92615 0.91298 0.93430 0.93955 0.91259 0.90817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 8.21 37.16 0.31 -1.47 16 2 C 0.06 0.91 2.12 -68.86 -0.15 0.76 16 3 H 0.10 1.36 6.75 -51.93 -0.35 1.01 16 4 C 0.48 9.79 5.92 -10.99 -0.07 9.72 16 5 O -0.54 -13.07 11.95 5.56 0.07 -13.00 16 6 N -0.60 -12.69 2.86 -182.96 -0.52 -13.21 16 7 C 0.08 1.32 9.85 59.84 0.59 1.91 16 8 C 0.25 6.44 5.17 -5.19 -0.03 6.41 16 9 C -0.52 -14.91 9.39 -34.44 -0.32 -15.24 16 10 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 11 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 12 N -0.90 -26.81 13.29 55.43 0.74 -26.07 16 13 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 14 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 15 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 N -0.51 -7.62 4.01 -228.08 -0.91 -8.53 16 18 C 0.04 0.63 4.89 -3.83 -0.02 0.61 16 19 C -0.11 -1.49 5.74 -26.65 -0.15 -1.64 16 20 C -0.11 -1.43 4.79 -26.61 -0.13 -1.56 16 21 C -0.06 -0.77 0.77 -154.43 -0.12 -0.89 16 22 C -0.14 -1.60 8.48 37.16 0.32 -1.29 16 23 C -0.13 -1.46 8.04 37.16 0.30 -1.16 16 24 C 0.04 0.67 3.35 -3.83 -0.01 0.66 16 25 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.06 0.74 7.08 -51.93 -0.37 0.38 16 27 H 0.06 0.86 6.58 -51.92 -0.34 0.52 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 1.08 7.84 -51.93 -0.41 0.67 16 30 H 0.06 0.70 5.54 -51.93 -0.29 0.41 16 31 H 0.04 1.19 7.49 -51.93 -0.39 0.81 16 32 H 0.03 0.81 7.86 -51.93 -0.41 0.40 16 33 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 34 H 0.06 1.25 6.02 -51.93 -0.31 0.94 16 35 H 0.07 1.02 8.12 -51.93 -0.42 0.60 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.82 6.58 -51.93 -0.34 0.48 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.07 0.82 6.01 -51.93 -0.31 0.50 16 44 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.07 0.97 5.96 -51.93 -0.31 0.66 16 47 H 0.07 1.39 5.67 -51.93 -0.29 1.09 16 LS Contribution 350.19 15.07 5.28 5.28 Total: -1.00 -31.82 350.19 -8.28 -40.09 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -8.32 Total: -0.11 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: 0.42 Total: -1.51 kcal Atomic # 7 Polarization: -47.11 SS G_CDS: -0.70 Total: -47.82 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: 0.07 Total: -13.00 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.82 -8.28 -40.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112702234.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.100 kcal (2) G-P(sol) polarization free energy of solvation -31.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds