Wall clock time and date at job start Tue Mar 31 2020 05:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47395 * 2 1 4 4 C 1.50702 * 109.46834 * 120.00049 * 2 1 3 5 5 O 1.21280 * 120.00160 * 120.00236 * 4 2 1 6 6 N 1.34780 * 119.99625 * 299.99677 * 4 2 1 7 7 C 1.46493 * 120.00138 * 0.02562 * 6 4 2 8 8 C 1.46507 * 119.99772 * 180.02562 * 6 4 2 9 9 C 1.50699 * 109.47440 * 89.99962 * 8 6 4 10 10 H 1.07999 * 119.99948 * 359.97438 * 9 8 6 11 11 C 1.37874 * 120.00143 * 179.97438 * 9 8 6 12 12 N 1.31520 * 119.99547 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00181 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47027 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.47108 * 120.00184 * 13 11 9 16 16 H 1.48496 * 109.47449 * 240.00053 * 13 11 9 17 17 N 1.46894 * 109.47272 * 239.99527 * 2 1 3 18 18 C 1.46906 * 111.00344 * 306.04727 * 17 2 1 19 19 C 1.46904 * 110.99970 * 70.00117 * 17 2 1 20 20 C 1.53003 * 109.47271 * 169.99708 * 19 17 2 21 21 C 1.55238 * 110.46855 * 289.81150 * 20 19 17 22 22 C 1.54894 * 102.58338 * 203.39183 * 21 20 19 23 23 C 1.54266 * 104.31305 * 37.93170 * 22 21 20 24 24 C 1.53869 * 106.60031 * 336.32486 * 23 22 21 25 25 H 1.09003 * 109.47191 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47460 * 299.99944 * 1 2 3 27 27 H 1.09000 * 109.47104 * 60.00600 * 1 2 3 28 28 H 1.09001 * 109.47488 * 89.99924 * 7 6 4 29 29 H 1.09008 * 109.47205 * 209.99792 * 7 6 4 30 30 H 1.09000 * 109.47236 * 329.99597 * 7 6 4 31 31 H 1.08994 * 109.46699 * 210.00346 * 8 6 4 32 32 H 1.09007 * 109.46758 * 329.99913 * 8 6 4 33 33 H 0.97002 * 119.99299 * 180.02562 * 12 11 9 34 34 H 1.08999 * 109.46929 * 183.94962 * 18 17 2 35 35 H 1.08992 * 109.46827 * 303.95538 * 18 17 2 36 36 H 1.09005 * 109.46916 * 63.95346 * 18 17 2 37 37 H 1.08996 * 109.46990 * 50.00108 * 19 17 2 38 38 H 1.08995 * 109.46897 * 289.99763 * 19 17 2 39 39 H 1.09007 * 110.43010 * 52.46290 * 20 19 17 40 40 H 1.08996 * 110.89448 * 85.10747 * 21 20 19 41 41 H 1.08993 * 110.76342 * 321.62413 * 21 20 19 42 42 H 1.09002 * 110.48891 * 279.18596 * 22 21 20 43 43 H 1.08998 * 110.48494 * 156.67683 * 22 21 20 44 44 H 1.09001 * 110.03084 * 95.60669 * 23 22 21 45 45 H 1.08996 * 110.03108 * 216.98559 * 23 22 21 46 46 H 1.08999 * 110.04012 * 119.28327 * 24 23 22 47 47 H 1.09003 * 110.03070 * 240.71854 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7295 -1.6965 1.1193 6 7 1.7066 -0.2499 2.4546 7 6 0.8640 0.9409 2.5889 8 6 2.1954 -0.9402 3.6508 9 6 3.5227 -0.3562 4.0608 10 1 3.9590 0.4483 3.4874 11 6 4.1803 -0.8491 5.1679 12 7 3.6493 -1.8292 5.8658 13 14 5.8260 -0.1258 5.6757 14 1 6.2029 0.9573 4.7322 15 1 5.7201 0.4294 7.0489 16 1 6.8629 -1.1884 5.6499 17 7 2.0197 -0.6926 -1.1993 18 6 1.4343 -2.0356 -1.3077 19 6 1.7530 0.0971 -2.4090 20 6 2.4886 -0.5258 -3.5972 21 6 4.0207 -0.3196 -3.4558 22 6 4.5124 -0.4274 -4.9207 23 6 3.4124 0.2732 -5.7447 24 6 2.1257 0.2107 -4.9032 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.1839 0.6427 2.6224 29 1 1.1217 1.4666 3.5084 30 1 1.0273 1.5997 1.7359 31 1 1.4774 -0.8149 4.4613 32 1 2.3168 -2.0015 3.4337 33 1 4.1118 -2.1757 6.6450 34 1 1.8665 -2.5522 -2.1647 35 1 1.6466 -2.5988 -0.3990 36 1 0.3555 -1.9522 -1.4398 37 1 2.1025 1.1187 -2.2604 38 1 0.6815 0.1051 -2.6087 39 1 2.2505 -1.5864 -3.6786 40 1 4.4634 -1.1033 -2.8411 41 1 4.2417 0.6658 -3.0456 42 1 4.6034 -1.4725 -5.2166 43 1 5.4657 0.0868 -5.0419 44 1 3.6880 1.3116 -5.9287 45 1 3.2662 -0.2473 -6.6911 46 1 1.7768 1.2187 -4.6788 47 1 1.3544 -0.3408 -5.4409 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126163633.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:01 Heat of formation + Delta-G solvation = -34.152278 kcal Electronic energy + Delta-G solvation = -23387.988965 eV Core-core repulsion = 20184.673896 eV Total energy + Delta-G solvation = -3203.315069 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.79796 -38.41244 -36.37990 -34.77974 -32.71228 -31.29287 -29.26551 -28.65111 -27.51635 -26.46253 -25.94540 -24.51458 -22.96020 -21.02366 -20.38276 -19.63009 -18.24644 -16.77123 -16.37513 -15.84143 -15.73116 -15.07672 -14.87464 -14.54762 -14.40958 -14.02036 -13.66415 -13.49728 -13.34132 -12.84934 -12.77745 -12.31391 -12.15785 -11.83522 -11.63255 -11.40944 -11.36201 -11.23024 -11.18344 -11.07298 -11.02208 -10.86572 -10.78840 -10.67507 -10.58222 -10.54519 -10.32547 -10.11513 -9.55428 -8.72167 -8.40568 -7.99921 -7.55890 -6.01100 -4.05367 3.32349 3.39790 3.43520 3.52563 3.72812 4.26291 4.48902 4.58252 4.59930 4.69383 5.02935 5.06672 5.20726 5.28474 5.33738 5.35891 5.42272 5.45426 5.51683 5.57314 5.60672 5.67692 5.69134 5.75816 5.77301 5.80129 5.82178 5.88766 5.94813 5.98946 6.03677 6.13169 6.25699 6.29205 6.35892 6.39176 6.48355 7.02200 7.23451 7.29542 7.48734 7.60532 7.96220 8.27540 8.48800 8.95533 9.19772 9.59935 11.06973 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020678 B = 0.003944 C = 0.003559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.795937 B = 7096.911470 C = 7866.311879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.064 3.936 3 H 0.099 0.901 4 C 0.512 3.488 5 O -0.522 6.522 6 N -0.604 5.604 7 C 0.083 3.917 8 C 0.247 3.753 9 C -0.523 4.523 10 H 0.058 0.942 11 C 0.060 3.940 12 N -0.896 5.896 13 Si 0.898 3.102 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.283 1.283 17 N -0.513 5.513 18 C 0.017 3.983 19 C 0.063 3.937 20 C -0.088 4.088 21 C -0.107 4.107 22 C -0.129 4.129 23 C -0.123 4.123 24 C -0.120 4.120 25 H 0.063 0.937 26 H 0.079 0.921 27 H 0.058 0.942 28 H 0.045 0.955 29 H 0.072 0.928 30 H 0.057 0.943 31 H 0.031 0.969 32 H 0.043 0.957 33 H 0.262 0.738 34 H 0.064 0.936 35 H 0.090 0.910 36 H 0.019 0.981 37 H 0.071 0.929 38 H 0.031 0.969 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.061 0.939 44 H 0.060 0.940 45 H 0.058 0.942 46 H 0.062 0.938 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.081 6.122 -19.171 21.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.048 4.048 3 H 0.116 0.884 4 C 0.297 3.703 5 O -0.398 6.398 6 N -0.337 5.337 7 C -0.061 4.061 8 C 0.128 3.872 9 C -0.562 4.562 10 H 0.076 0.924 11 C -0.142 4.142 12 N -0.535 5.535 13 Si 0.726 3.274 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.209 1.209 17 N -0.236 5.236 18 C -0.131 4.131 19 C -0.065 4.065 20 C -0.107 4.107 21 C -0.144 4.144 22 C -0.166 4.166 23 C -0.161 4.161 24 C -0.158 4.158 25 H 0.082 0.918 26 H 0.098 0.902 27 H 0.077 0.923 28 H 0.064 0.936 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.049 0.951 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.108 0.892 36 H 0.038 0.962 37 H 0.090 0.910 38 H 0.049 0.951 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.077 0.923 46 H 0.081 0.919 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.159 5.416 -19.005 20.700 hybrid contribution -0.034 0.607 0.317 0.685 sum -6.193 6.023 -18.689 20.589 Atomic orbital electron populations 1.22650 0.96174 1.03189 1.03245 1.21651 0.93668 0.98752 0.90724 0.88359 1.20064 0.81082 0.85213 0.83904 1.90628 1.36979 1.26409 1.85817 1.48123 1.49956 1.28330 1.07308 1.21761 0.93687 0.88290 1.02388 1.19261 0.94144 0.93686 0.80149 1.21486 1.04813 1.18948 1.10975 0.92415 1.24940 0.97944 0.94986 0.96318 1.69950 1.38985 1.26210 1.18379 0.86443 0.83808 0.79075 0.78105 1.19793 1.21033 1.20877 1.61811 1.58564 1.02703 1.00479 1.22598 0.95714 0.90673 1.04115 1.22209 0.97405 0.97255 0.89644 1.22075 0.95980 0.99837 0.92830 1.22474 0.94319 1.02322 0.95330 1.22403 0.97937 1.00288 0.96008 1.22107 0.95187 1.00457 0.98313 1.22165 0.97449 1.00454 0.95704 0.91825 0.90250 0.92272 0.93627 0.90915 0.92464 0.95133 0.93913 0.92834 0.91781 0.89167 0.96237 0.91027 0.95075 0.90618 0.90833 0.91624 0.91959 0.92020 0.92131 0.92304 0.91907 0.92207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.41 8.08 37.16 0.30 -2.11 16 2 C 0.06 1.00 1.93 -68.87 -0.13 0.86 16 3 H 0.10 1.42 7.19 -51.93 -0.37 1.05 16 4 C 0.51 10.77 6.77 -10.98 -0.07 10.69 16 5 O -0.52 -13.25 13.91 5.56 0.08 -13.18 16 6 N -0.60 -12.88 2.86 -182.95 -0.52 -13.40 16 7 C 0.08 1.31 8.80 59.84 0.53 1.83 16 8 C 0.25 6.52 5.16 -5.19 -0.03 6.50 16 9 C -0.52 -15.05 9.39 -34.44 -0.32 -15.38 16 10 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 11 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 12 N -0.90 -26.91 13.29 55.43 0.74 -26.18 16 13 Si 0.90 22.18 29.54 -169.99 -5.02 17.16 16 14 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 15 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 16 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 17 N -0.51 -7.70 4.34 -236.29 -1.02 -8.73 16 18 C 0.02 0.25 8.29 60.07 0.50 0.75 16 19 C 0.06 0.73 3.81 -3.82 -0.01 0.72 16 20 C -0.09 -0.95 2.82 -88.77 -0.25 -1.20 16 21 C -0.11 -1.24 6.25 -24.55 -0.15 -1.39 16 22 C -0.13 -1.24 6.82 -25.07 -0.17 -1.41 16 23 C -0.12 -1.05 6.80 -25.62 -0.17 -1.22 16 24 C -0.12 -1.06 6.37 -25.62 -0.16 -1.22 16 25 H 0.06 0.85 6.41 -51.93 -0.33 0.51 16 26 H 0.08 0.93 4.53 -51.93 -0.24 0.69 16 27 H 0.06 0.62 6.91 -51.93 -0.36 0.26 16 28 H 0.05 0.62 6.95 -51.93 -0.36 0.25 16 29 H 0.07 1.19 8.07 -51.92 -0.42 0.77 16 30 H 0.06 0.75 6.01 -51.93 -0.31 0.43 16 31 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 32 H 0.04 1.27 7.42 -51.93 -0.39 0.89 16 33 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 34 H 0.06 0.86 6.34 -51.93 -0.33 0.53 16 35 H 0.09 1.65 5.82 -51.93 -0.30 1.34 16 36 H 0.02 0.25 6.46 -51.93 -0.34 -0.08 16 37 H 0.07 0.81 7.81 -51.93 -0.41 0.40 16 38 H 0.03 0.34 7.06 -51.93 -0.37 -0.03 16 39 H 0.08 0.86 6.31 -51.93 -0.33 0.53 16 40 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.07 0.78 7.97 -51.93 -0.41 0.37 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.06 0.53 7.84 -51.93 -0.41 0.12 16 47 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 354.16 15.07 5.34 5.34 Total: -1.00 -32.56 354.16 -8.84 -41.40 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -8.17 Total: -1.47 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: -0.26 Total: -0.95 kcal Atomic # 7 Polarization: -47.49 SS G_CDS: -0.81 Total: -48.30 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: 0.08 Total: -13.18 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.56 -8.84 -41.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126163633.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.252 kcal (2) G-P(sol) polarization free energy of solvation -32.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds