Wall clock time and date at job start Tue Mar 31 2020 05:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47003 * 2 1 4 4 C 1.50701 * 109.46630 * 240.00335 * 2 1 3 5 5 O 1.21288 * 119.99552 * 264.83472 * 4 2 1 6 6 N 1.34779 * 120.00323 * 84.83432 * 4 2 1 7 7 C 1.46497 * 119.99710 * 4.74979 * 6 4 2 8 8 C 1.46499 * 120.00039 * 184.75366 * 6 4 2 9 9 C 1.50695 * 109.47427 * 89.99729 * 8 6 4 10 10 H 1.08009 * 119.99995 * 0.02562 * 9 8 6 11 11 C 1.37875 * 120.00280 * 179.97438 * 9 8 6 12 12 N 1.31514 * 119.99955 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 119.99946 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47098 * 60.00630 * 13 11 9 15 15 H 1.48505 * 109.46975 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47249 * 300.00025 * 13 11 9 17 17 N 1.46898 * 109.47147 * 120.00352 * 2 1 3 18 18 C 1.46894 * 110.99811 * 180.54721 * 17 2 1 19 19 C 1.46901 * 110.99683 * 304.50341 * 17 2 1 20 20 C 1.53003 * 109.46864 * 170.00397 * 19 17 2 21 21 C 1.55242 * 110.57764 * 289.87218 * 20 19 17 22 22 C 1.54886 * 102.58448 * 203.34117 * 21 20 19 23 23 C 1.54261 * 104.31810 * 37.93036 * 22 21 20 24 24 C 1.53882 * 106.59910 * 336.32342 * 23 22 21 25 25 H 1.08989 * 109.47584 * 187.81088 * 1 2 3 26 26 H 1.09007 * 109.46582 * 307.80773 * 1 2 3 27 27 H 1.08996 * 109.47221 * 67.80020 * 1 2 3 28 28 H 1.09008 * 109.46862 * 93.50866 * 7 6 4 29 29 H 1.09003 * 109.47020 * 213.50140 * 7 6 4 30 30 H 1.09000 * 109.47427 * 333.50798 * 7 6 4 31 31 H 1.09000 * 109.47198 * 210.00369 * 8 6 4 32 32 H 1.09001 * 109.46725 * 329.99963 * 8 6 4 33 33 H 0.97003 * 119.99677 * 179.97438 * 12 11 9 34 34 H 1.09003 * 109.47416 * 189.33780 * 18 17 2 35 35 H 1.08995 * 109.47685 * 309.33709 * 18 17 2 36 36 H 1.09001 * 109.47261 * 69.33714 * 18 17 2 37 37 H 1.08991 * 109.47675 * 50.00323 * 19 17 2 38 38 H 1.09000 * 109.46889 * 289.99497 * 19 17 2 39 39 H 1.09002 * 110.43662 * 52.45203 * 20 19 17 40 40 H 1.08999 * 110.89813 * 85.04707 * 21 20 19 41 41 H 1.09001 * 110.76092 * 321.56745 * 21 20 19 42 42 H 1.09003 * 110.48475 * 279.18489 * 22 21 20 43 43 H 1.09003 * 110.48807 * 156.67426 * 22 21 20 44 44 H 1.09004 * 110.03628 * 95.60832 * 23 22 21 45 45 H 1.09003 * 110.03791 * 216.99443 * 23 22 21 46 46 H 1.09003 * 110.03068 * 119.28047 * 24 23 22 47 47 H 1.08991 * 110.03274 * 240.66666 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.3235 -1.8865 -1.1753 6 7 2.1578 -0.0388 -2.3924 7 6 1.9061 1.4037 -2.4354 8 6 2.5458 -0.7514 -3.6121 9 6 1.3104 -1.2433 -4.3212 10 1 0.3337 -1.0445 -3.9051 11 6 1.4268 -1.9461 -5.5016 12 7 2.6160 -2.1877 -6.0086 13 14 -0.1047 -2.5551 -6.3809 14 1 -0.9649 -1.3978 -6.7358 15 1 0.2887 -3.2775 -7.6173 16 1 -0.8553 -3.4745 -5.4885 17 7 2.0197 -0.6926 1.1994 18 6 3.4881 -0.7008 1.2398 19 6 1.4627 -0.0914 2.4186 20 6 1.7888 -0.9805 3.6203 21 6 0.9759 -2.3016 3.5582 22 6 0.9455 -2.7492 5.0407 23 6 0.7877 -1.4349 5.8328 24 6 1.3239 -0.3103 4.9297 25 1 -0.3634 -1.0180 0.1396 26 1 -0.3633 0.6300 0.8120 27 1 -0.3633 0.3883 -0.9514 28 1 2.8447 1.9406 -2.2976 29 1 1.4744 1.6686 -3.4007 30 1 1.2120 1.6754 -1.6401 31 1 3.0966 -0.0768 -4.2675 32 1 3.1774 -1.6007 -3.3513 33 1 2.6978 -2.6825 -6.8389 34 1 3.8258 -1.3569 2.0421 35 1 3.8758 -1.0623 0.2875 36 1 3.8523 0.3106 1.4200 37 1 0.3814 0.0002 2.3172 38 1 1.8987 0.8962 2.5685 39 1 2.8574 -1.1920 3.6585 40 1 1.4845 -3.0425 2.9413 41 1 -0.0332 -2.1174 3.1895 42 1 1.8779 -3.2463 5.3083 43 1 0.0968 -3.4086 5.2228 44 1 -0.2637 -1.2607 6.0616 45 1 1.3672 -1.4826 6.7548 46 1 0.5326 0.4096 4.7202 47 1 2.1637 0.1885 5.4133 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126163846.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:03 Heat of formation + Delta-G solvation = -39.948613 kcal Electronic energy + Delta-G solvation = -23369.896674 eV Core-core repulsion = 20166.330257 eV Total energy + Delta-G solvation = -3203.566417 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.70041 -38.41650 -36.28431 -34.69312 -32.66409 -31.37759 -29.77675 -28.69994 -27.83659 -26.01514 -25.63639 -24.39191 -22.98989 -21.16946 -20.36468 -19.69212 -18.15866 -16.77730 -16.49158 -15.98701 -15.71561 -14.98595 -14.92097 -14.69886 -14.31705 -14.03107 -13.70121 -13.36909 -13.13584 -13.02439 -12.53931 -12.15755 -12.09958 -11.95822 -11.77013 -11.50993 -11.34110 -11.29114 -11.18305 -11.11386 -11.01490 -10.92623 -10.83572 -10.75272 -10.59446 -10.52939 -10.31261 -10.13391 -9.60932 -8.75510 -8.41206 -8.06498 -7.57711 -6.02045 -4.06974 3.33204 3.37739 3.39642 3.47418 3.71150 4.23495 4.46762 4.57266 4.58135 4.66246 5.00131 5.10828 5.25923 5.31244 5.34511 5.35812 5.39387 5.45289 5.54366 5.56356 5.59579 5.64727 5.67422 5.74342 5.77821 5.82416 5.85762 5.92459 5.94682 5.95819 6.02506 6.20078 6.22671 6.24446 6.34596 6.38980 6.44238 7.00314 7.18961 7.24475 7.48422 7.59058 7.94926 8.26157 8.47569 8.93184 9.17990 9.58274 11.05951 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026499 B = 0.003652 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.399670 B = 7664.484316 C = 7987.045138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.064 3.936 3 H 0.053 0.947 4 C 0.511 3.489 5 O -0.522 6.522 6 N -0.606 5.606 7 C 0.081 3.919 8 C 0.247 3.753 9 C -0.527 4.527 10 H 0.056 0.944 11 C 0.061 3.939 12 N -0.895 5.895 13 Si 0.898 3.102 14 H -0.277 1.277 15 H -0.286 1.286 16 H -0.276 1.276 17 N -0.515 5.515 18 C 0.023 3.977 19 C 0.059 3.941 20 C -0.088 4.088 21 C -0.106 4.106 22 C -0.129 4.129 23 C -0.123 4.123 24 C -0.120 4.120 25 H 0.073 0.927 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.042 0.958 29 H 0.072 0.928 30 H 0.058 0.942 31 H 0.030 0.970 32 H 0.044 0.956 33 H 0.264 0.736 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.018 0.982 37 H 0.080 0.920 38 H 0.029 0.971 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.061 0.939 44 H 0.060 0.940 45 H 0.058 0.942 46 H 0.062 0.938 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.655 7.588 20.081 21.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.048 4.048 3 H 0.071 0.929 4 C 0.296 3.704 5 O -0.397 6.397 6 N -0.339 5.339 7 C -0.063 4.063 8 C 0.127 3.873 9 C -0.566 4.566 10 H 0.075 0.925 11 C -0.141 4.141 12 N -0.534 5.534 13 Si 0.725 3.275 14 H -0.203 1.203 15 H -0.212 1.212 16 H -0.201 1.201 17 N -0.240 5.240 18 C -0.125 4.125 19 C -0.068 4.068 20 C -0.107 4.107 21 C -0.144 4.144 22 C -0.166 4.166 23 C -0.161 4.161 24 C -0.158 4.158 25 H 0.092 0.908 26 H 0.078 0.922 27 H 0.086 0.914 28 H 0.061 0.939 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.048 0.952 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.036 0.964 37 H 0.098 0.902 38 H 0.047 0.953 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.077 0.923 46 H 0.081 0.919 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.549 6.381 19.892 21.046 hybrid contribution -0.523 0.663 -0.592 1.031 sum -3.072 7.044 19.300 20.774 Atomic orbital electron populations 1.21795 0.92495 1.03476 1.02047 1.21670 0.97079 0.95628 0.90391 0.92933 1.20058 0.78964 0.87486 0.83847 1.90665 1.48853 1.15682 1.84508 1.48165 1.67634 1.07899 1.10216 1.21675 0.99677 0.82203 1.02732 1.19251 0.96122 0.92493 0.79387 1.21406 0.93021 1.35423 1.06711 0.92532 1.24936 0.96209 0.95771 0.97178 1.69926 1.22231 1.40605 1.20657 0.86563 0.83054 0.78994 0.78839 1.20267 1.21183 1.20141 1.61681 1.08184 1.53758 1.00328 1.22448 0.87183 0.99087 1.03747 1.22295 1.00424 0.94912 0.89194 1.22059 1.00340 0.95519 0.92762 1.22467 1.00158 0.96611 0.95148 1.22403 1.01358 0.96831 0.96052 1.22110 1.00708 0.95064 0.98184 1.22165 1.00385 0.97810 0.95423 0.90835 0.92171 0.91379 0.93946 0.90876 0.92357 0.95153 0.93809 0.92678 0.91278 0.90444 0.96382 0.90212 0.95330 0.90731 0.90855 0.91597 0.91968 0.92015 0.92117 0.92301 0.91894 0.92194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 8.27 37.16 0.31 -1.67 16 2 C 0.06 1.02 1.62 -68.86 -0.11 0.91 16 3 H 0.05 0.74 6.64 -51.93 -0.35 0.40 16 4 C 0.51 10.87 5.79 -10.98 -0.06 10.80 16 5 O -0.52 -13.42 15.04 5.55 0.08 -13.34 16 6 N -0.61 -13.08 2.86 -182.95 -0.52 -13.61 16 7 C 0.08 1.32 10.06 59.85 0.60 1.92 16 8 C 0.25 6.56 5.21 -5.20 -0.03 6.53 16 9 C -0.53 -15.09 9.39 -34.44 -0.32 -15.41 16 10 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 11 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 12 N -0.90 -26.89 13.29 55.43 0.74 -26.15 16 13 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 14 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 15 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 16 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 17 N -0.52 -7.70 4.23 -236.29 -1.00 -8.70 16 18 C 0.02 0.34 8.96 60.06 0.54 0.88 16 19 C 0.06 0.69 3.99 -3.82 -0.02 0.67 16 20 C -0.09 -0.92 2.81 -88.77 -0.25 -1.17 16 21 C -0.11 -1.19 6.26 -24.55 -0.15 -1.34 16 22 C -0.13 -1.19 6.82 -25.08 -0.17 -1.37 16 23 C -0.12 -1.02 6.80 -25.61 -0.17 -1.19 16 24 C -0.12 -1.03 6.37 -25.61 -0.16 -1.20 16 25 H 0.07 1.15 8.14 -51.94 -0.42 0.73 16 26 H 0.06 0.66 6.59 -51.92 -0.34 0.32 16 27 H 0.07 0.98 7.46 -51.93 -0.39 0.59 16 28 H 0.04 0.60 8.14 -51.92 -0.42 0.18 16 29 H 0.07 1.21 8.10 -51.93 -0.42 0.79 16 30 H 0.06 0.78 5.32 -51.93 -0.28 0.50 16 31 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 32 H 0.04 1.31 7.36 -51.93 -0.38 0.93 16 33 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 34 H 0.07 0.91 6.59 -51.93 -0.34 0.57 16 35 H 0.08 1.38 6.15 -51.93 -0.32 1.06 16 36 H 0.02 0.23 8.07 -51.93 -0.42 -0.19 16 37 H 0.08 0.88 5.75 -51.93 -0.30 0.58 16 38 H 0.03 0.31 8.07 -51.93 -0.42 -0.11 16 39 H 0.07 0.82 6.42 -51.93 -0.33 0.49 16 40 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.07 0.76 7.98 -51.93 -0.41 0.34 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.06 0.51 7.84 -51.93 -0.41 0.11 16 47 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 361.78 15.07 5.45 5.45 Total: -1.00 -32.60 361.78 -8.83 -41.43 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -8.45 Total: -2.12 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: -0.10 Total: 0.03 kcal Atomic # 7 Polarization: -47.67 SS G_CDS: -0.79 Total: -48.46 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: 0.08 Total: -13.34 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.60 -8.83 -41.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126163846.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.479 kcal (2) G-P(sol) polarization free energy of solvation -32.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds