Wall clock time and date at job start Tue Mar 31 2020 05:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09009 * 109.46612 * 2 1 4 4 C 1.50696 * 109.47184 * 240.00779 * 2 1 3 5 5 O 1.21282 * 119.99864 * 254.10354 * 4 2 1 6 6 N 1.34783 * 120.00426 * 74.10103 * 4 2 1 7 7 C 1.46502 * 120.00171 * 180.02562 * 6 4 2 8 8 C 1.52995 * 109.46781 * 180.02562 * 7 6 4 9 9 C 1.53011 * 109.47098 * 294.99486 * 8 7 6 10 10 C 1.53003 * 109.47011 * 180.02562 * 9 8 7 11 11 C 1.53001 * 109.46890 * 60.00341 * 10 9 8 12 12 C 1.52999 * 109.47137 * 299.99942 * 11 10 9 13 13 C 1.52991 * 109.47402 * 60.00105 * 12 11 10 14 14 N 1.46888 * 109.47563 * 120.00114 * 2 1 3 15 15 C 1.46901 * 111.00522 * 284.19668 * 14 2 1 16 16 C 1.46902 * 111.00209 * 48.15014 * 14 2 1 17 17 C 1.50697 * 109.47921 * 169.99840 * 16 14 2 18 18 H 1.08005 * 119.99307 * 0.02562 * 17 16 14 19 19 C 1.37868 * 120.00331 * 180.02562 * 17 16 14 20 20 N 1.31517 * 119.99944 * 179.97438 * 19 17 16 21 21 Si 1.86804 * 120.00206 * 0.02562 * 19 17 16 22 22 H 1.48494 * 109.47129 * 90.00072 * 21 19 17 23 23 H 1.48502 * 109.47070 * 210.00094 * 21 19 17 24 24 H 1.48500 * 109.46662 * 329.99733 * 21 19 17 25 25 H 1.08999 * 109.46623 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46814 * 299.99553 * 1 2 3 27 27 H 1.08997 * 109.47437 * 59.99674 * 1 2 3 28 28 H 0.97000 * 119.99405 * 0.02562 * 6 4 2 29 29 H 1.08995 * 109.46642 * 299.99934 * 7 6 4 30 30 H 1.08998 * 109.46793 * 60.00239 * 7 6 4 31 31 H 1.08991 * 109.47545 * 54.99428 * 8 7 6 32 32 H 1.08993 * 109.47394 * 300.00383 * 9 8 7 33 33 H 1.09001 * 109.46646 * 60.00576 * 9 8 7 34 34 H 1.09002 * 109.47237 * 300.00243 * 10 9 8 35 35 H 1.08993 * 109.46736 * 180.02562 * 10 9 8 36 36 H 1.09002 * 109.47167 * 179.97438 * 11 10 9 37 37 H 1.09002 * 109.47261 * 59.99917 * 11 10 9 38 38 H 1.09002 * 109.47024 * 300.00119 * 12 11 10 39 39 H 1.08997 * 109.46947 * 180.02562 * 12 11 10 40 40 H 1.09004 * 109.47432 * 180.02562 * 13 12 11 41 41 H 1.09002 * 109.47488 * 59.99759 * 13 12 11 42 42 H 1.08999 * 109.47280 * 189.53290 * 15 14 2 43 43 H 1.08995 * 109.46854 * 309.52800 * 15 14 2 44 44 H 1.08997 * 109.47064 * 69.52460 * 15 14 2 45 45 H 1.09010 * 109.46862 * 49.99440 * 16 14 2 46 46 H 1.09005 * 109.46991 * 290.00548 * 16 14 2 47 47 H 0.97008 * 119.99952 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7102 -1.2305 5 8 2.5057 -1.8230 -1.1376 6 7 1.9556 -0.1089 -2.4343 7 6 2.4434 -0.7996 -3.6307 8 6 2.2416 0.0960 -4.8545 9 6 0.7446 0.3067 -5.0910 10 6 0.5428 1.2019 -6.3153 11 6 1.1640 0.5337 -7.5435 12 6 2.6609 0.3229 -7.3071 13 6 2.8628 -0.5721 -6.0829 14 7 2.0198 -0.6924 1.1993 15 6 1.8782 0.1546 2.3911 16 6 1.3327 -1.9779 1.3825 17 6 2.0218 -2.7660 2.4665 18 1 2.8839 -2.3530 2.9693 19 6 1.5519 -4.0141 2.8162 20 7 2.1537 -4.7020 3.7618 21 14 0.0614 -4.7286 1.9460 22 1 0.5051 -5.5018 0.7584 23 1 -0.6715 -5.6256 2.8752 24 1 -0.8343 -3.6262 1.5127 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.5773 0.7812 -2.5085 29 1 3.5041 -1.0220 -3.5145 30 1 1.8898 -1.7289 -3.7647 31 1 2.7214 1.0594 -4.6828 32 1 0.2647 -0.6567 -5.2627 33 1 0.3020 0.7823 -4.2158 34 1 1.0227 2.1654 -6.1440 35 1 -0.5236 1.3523 -6.4835 36 1 1.0198 1.1712 -8.4159 37 1 0.6840 -0.4298 -7.7148 38 1 3.1408 1.2865 -7.1358 39 1 3.1035 -0.1526 -8.1823 40 1 3.9292 -0.7219 -5.9141 41 1 2.3828 -1.5357 -6.2540 42 1 2.3982 -0.3083 3.2298 43 1 2.3099 1.1356 2.1929 44 1 0.8216 0.2652 2.6349 45 1 1.3610 -2.5412 0.4497 46 1 0.2958 -1.7983 1.6671 47 1 1.8229 -5.5801 4.0082 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133228983.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:54 Heat of formation + Delta-G solvation = -52.898593 kcal Electronic energy + Delta-G solvation = -23111.580597 eV Core-core repulsion = 19907.452627 eV Total energy + Delta-G solvation = -3204.127970 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.87143 -38.79823 -36.57587 -34.60134 -32.53144 -31.60426 -31.02154 -30.05745 -27.79709 -26.09876 -25.06160 -23.28115 -22.83371 -21.51258 -20.66980 -20.06603 -19.11199 -16.89166 -16.71525 -15.85078 -15.67658 -15.05627 -14.63786 -14.48348 -14.34277 -14.28710 -13.91824 -13.71018 -13.41057 -12.93459 -12.90746 -12.48926 -12.35481 -12.34288 -12.09102 -11.90350 -11.84390 -11.42336 -11.37056 -11.19681 -11.05816 -10.99709 -10.74653 -10.45791 -10.33982 -10.30644 -10.25053 -9.78676 -9.39220 -8.90550 -8.78470 -8.39422 -7.29749 -5.91635 -3.85985 3.13044 3.34681 3.39291 3.44912 3.47113 4.34434 4.42570 4.44175 4.54944 4.83846 4.85862 4.94818 4.99258 5.12048 5.16586 5.21407 5.22089 5.34167 5.36134 5.39713 5.43724 5.53534 5.64724 5.71878 5.75041 5.82009 5.85182 5.87187 5.89731 5.93711 5.98447 6.03467 6.06428 6.20350 6.25738 6.37601 6.64107 6.73370 7.00908 7.13874 7.67083 7.83188 7.97653 8.13454 8.70055 8.80479 9.16689 9.71284 11.22078 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024016 B = 0.003669 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.603071 B = 7629.755127 C = 8008.234953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.063 3.937 3 H 0.091 0.909 4 C 0.514 3.486 5 O -0.501 6.501 6 N -0.740 5.740 7 C 0.125 3.875 8 C -0.097 4.097 9 C -0.116 4.116 10 C -0.119 4.119 11 C -0.121 4.121 12 C -0.118 4.118 13 C -0.113 4.113 14 N -0.512 5.512 15 C 0.039 3.961 16 C 0.157 3.843 17 C -0.498 4.498 18 H 0.078 0.922 19 C 0.067 3.933 20 N -0.905 5.905 21 Si 0.874 3.126 22 H -0.276 1.276 23 H -0.288 1.288 24 H -0.270 1.270 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.055 0.945 28 H 0.394 0.606 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.080 0.920 43 H 0.046 0.954 44 H 0.017 0.983 45 H 0.046 0.954 46 H -0.014 1.014 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.808 15.386 -21.530 26.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.050 4.050 3 H 0.109 0.891 4 C 0.300 3.700 5 O -0.373 6.373 6 N -0.396 5.396 7 C 0.001 3.999 8 C -0.116 4.116 9 C -0.153 4.153 10 C -0.157 4.157 11 C -0.158 4.158 12 C -0.155 4.155 13 C -0.151 4.151 14 N -0.235 5.235 15 C -0.109 4.109 16 C 0.031 3.969 17 C -0.537 4.537 18 H 0.096 0.904 19 C -0.134 4.134 20 N -0.546 5.546 21 Si 0.702 3.298 22 H -0.201 1.201 23 H -0.214 1.214 24 H -0.195 1.195 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.074 0.926 28 H 0.228 0.772 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.099 0.901 43 H 0.065 0.935 44 H 0.035 0.965 45 H 0.064 0.936 46 H 0.004 0.996 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.946 14.249 -21.400 25.878 hybrid contribution -1.830 0.101 -0.343 1.864 sum -4.775 14.350 -21.743 26.486 Atomic orbital electron populations 1.22382 0.96047 1.03414 1.01960 1.21614 0.93722 0.97953 0.91725 0.89089 1.20724 0.78590 0.86767 0.83954 1.90757 1.42192 1.18927 1.85381 1.46045 1.65911 1.20627 1.06969 1.21314 0.99874 0.95418 0.83269 1.21395 0.96504 0.99398 0.94260 1.21617 0.95552 1.00359 0.97819 1.21534 1.00452 0.98801 0.94891 1.21549 0.95841 1.00808 0.97641 1.21513 0.96290 0.99957 0.97786 1.21510 1.00872 0.98972 0.93747 1.61924 1.57032 1.04468 1.00121 1.22263 0.98952 0.95514 0.94208 1.20388 0.91459 0.86382 0.98663 1.21021 1.14435 1.00885 1.17323 0.90361 1.24846 0.96789 0.96728 0.95002 1.69901 1.41003 1.12822 1.30824 0.86875 0.83709 0.79366 0.79873 1.20130 1.21405 1.19510 0.91340 0.91564 0.92626 0.77241 0.91622 0.91782 0.90604 0.91688 0.91862 0.92044 0.92100 0.92258 0.92005 0.92020 0.92001 0.91564 0.91580 0.90106 0.93524 0.96486 0.93581 0.99646 0.92881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.70 8.33 37.16 0.31 -2.39 16 2 C 0.06 1.07 2.70 -68.87 -0.19 0.88 16 3 H 0.09 1.25 7.82 -51.92 -0.41 0.85 16 4 C 0.51 9.20 6.94 -10.98 -0.08 9.12 16 5 O -0.50 -11.73 14.32 5.56 0.08 -11.65 16 6 N -0.74 -9.36 5.28 -60.30 -0.32 -9.68 16 7 C 0.13 1.47 5.06 -4.04 -0.02 1.45 16 8 C -0.10 -0.80 2.23 -90.61 -0.20 -1.00 16 9 C -0.12 -0.90 5.08 -26.72 -0.14 -1.03 16 10 C -0.12 -0.79 5.92 -26.73 -0.16 -0.95 16 11 C -0.12 -0.78 5.92 -26.73 -0.16 -0.94 16 12 C -0.12 -0.78 5.92 -26.74 -0.16 -0.94 16 13 C -0.11 -0.87 5.20 -26.73 -0.14 -1.01 16 14 N -0.51 -11.26 4.45 -237.73 -1.06 -12.31 16 15 C 0.04 0.74 9.03 60.07 0.54 1.29 16 16 C 0.16 4.07 2.30 -4.98 -0.01 4.06 16 17 C -0.50 -15.07 9.14 -34.44 -0.31 -15.39 16 18 H 0.08 2.55 7.34 -52.48 -0.39 2.17 16 19 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 20 N -0.91 -29.09 13.96 55.43 0.77 -28.32 16 21 Si 0.87 23.02 27.47 -169.99 -4.67 18.35 16 22 H -0.28 -7.28 7.11 56.52 0.40 -6.88 16 23 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 24 H -0.27 -6.80 6.54 56.52 0.37 -6.43 16 25 H 0.07 1.23 6.53 -51.93 -0.34 0.89 16 26 H 0.07 0.95 7.14 -51.93 -0.37 0.58 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.39 3.70 7.65 -40.82 -0.31 3.39 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.48 7.18 -51.93 -0.37 0.10 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.08 1.72 7.02 -51.93 -0.36 1.36 16 43 H 0.05 0.73 7.87 -51.93 -0.41 0.32 16 44 H 0.02 0.31 7.18 -51.93 -0.37 -0.07 16 45 H 0.05 1.28 5.31 -51.92 -0.28 1.01 16 46 H -0.01 -0.36 5.85 -51.93 -0.30 -0.66 16 47 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 LS Contribution 356.55 15.07 5.37 5.37 Total: -1.00 -35.42 356.55 -9.20 -44.62 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -8.58 Total: -1.50 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: -0.81 Total: -4.89 kcal Atomic # 7 Polarization: -49.71 SS G_CDS: -0.60 Total: -50.31 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.08 Total: -11.65 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -4.67 Total: 18.35 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -35.42 -9.20 -44.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133228983.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.279 kcal (2) G-P(sol) polarization free energy of solvation -35.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds