Wall clock time and date at job start Tue Mar 31 2020 05:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46992 * 2 1 4 4 C 1.50701 * 109.46738 * 240.00220 * 2 1 3 5 5 O 1.21284 * 119.99957 * 262.13618 * 4 2 1 6 6 N 1.34778 * 120.00208 * 82.13314 * 4 2 1 7 7 C 1.46501 * 119.99664 * 0.02562 * 6 4 2 8 8 C 1.46497 * 120.00163 * 179.97438 * 6 4 2 9 9 H 1.08997 * 109.47353 * 0.02562 * 8 6 4 10 10 C 1.53003 * 109.46995 * 120.00427 * 8 6 4 11 11 C 1.50698 * 109.47458 * 240.00375 * 8 6 4 12 12 H 1.08003 * 119.99811 * 0.02562 * 11 8 6 13 13 C 1.37878 * 120.00125 * 180.02562 * 11 8 6 14 14 N 1.31515 * 120.00019 * 359.97438 * 13 11 8 15 15 Si 1.86803 * 119.99990 * 180.02562 * 13 11 8 16 16 H 1.48500 * 109.47182 * 269.99961 * 15 13 11 17 17 H 1.48500 * 109.47111 * 29.99978 * 15 13 11 18 18 H 1.48500 * 109.46892 * 149.99834 * 15 13 11 19 19 N 1.46898 * 109.47416 * 120.00372 * 2 1 3 20 20 C 1.48004 * 110.99636 * 313.25789 * 19 2 1 21 21 C 1.50442 * 112.82311 * 191.34998 * 20 19 2 22 22 C 1.54305 * 108.50656 * 93.72313 * 21 20 19 23 23 C 1.45881 * 112.18630 * 281.46719 * 22 21 20 24 24 C 1.54305 * 112.18537 * 61.11675 * 23 22 21 25 25 C 1.47990 * 111.00073 * 184.53774 * 19 2 1 26 26 H 1.09003 * 109.47350 * 66.25200 * 1 2 3 27 27 H 1.08997 * 109.47488 * 186.25700 * 1 2 3 28 28 H 1.09004 * 109.47018 * 306.25296 * 1 2 3 29 29 H 1.08994 * 109.47352 * 269.99611 * 7 6 4 30 30 H 1.08998 * 109.46999 * 30.00209 * 7 6 4 31 31 H 1.09009 * 109.46800 * 149.99405 * 7 6 4 32 32 H 1.09001 * 109.46868 * 300.00128 * 10 8 6 33 33 H 1.08997 * 109.46841 * 59.99967 * 10 8 6 34 34 H 1.08997 * 109.47028 * 180.02562 * 10 8 6 35 35 H 0.96996 * 120.00053 * 179.97438 * 14 13 11 36 36 H 1.09003 * 108.80782 * 312.20346 * 20 19 2 37 37 H 1.08993 * 108.81947 * 70.48093 * 20 19 2 38 38 H 1.09007 * 109.63461 * 334.01535 * 21 20 19 39 39 H 1.09004 * 109.63048 * 213.42706 * 21 20 19 40 40 H 1.09007 * 108.94243 * 160.76257 * 22 21 20 41 41 H 1.09003 * 108.93981 * 42.16081 * 22 21 20 42 42 H 1.09002 * 108.93305 * 300.41754 * 23 22 21 43 43 H 1.09000 * 108.93778 * 181.82004 * 23 22 21 44 44 H 1.09005 * 109.62840 * 161.76617 * 24 23 22 45 45 H 1.08989 * 109.63670 * 41.16566 * 24 23 22 46 46 H 1.09007 * 108.81360 * 205.70369 * 25 19 2 47 47 H 1.09006 * 108.80975 * 323.96705 * 25 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2305 5 8 2.3698 -1.8734 -1.1640 6 7 2.1062 -0.0534 -2.4050 7 6 1.6989 1.3516 -2.4852 8 6 2.5950 -0.7438 -3.6011 9 1 2.8486 -1.7732 -3.3482 10 6 1.5054 -0.7365 -4.6751 11 6 3.8198 -0.0380 -4.1233 12 1 4.1968 0.8371 -3.6148 13 6 4.4592 -0.5095 -5.2502 14 7 4.0005 -1.5754 -5.8691 15 14 5.9779 0.3650 -5.8971 16 1 5.5704 1.4113 -6.8689 17 1 6.7051 0.9958 -4.7665 18 1 6.8654 -0.6171 -6.5702 19 7 2.0197 -0.6926 1.1994 20 6 1.3038 -0.2290 2.4089 21 6 1.9468 -0.7011 3.6845 22 6 2.9161 0.3931 4.1785 23 6 4.1772 0.3838 3.4452 24 6 3.9772 0.6503 1.9386 25 6 3.4950 -0.6183 1.2894 26 1 -0.3634 0.4139 -0.9407 27 1 -0.3634 -1.0215 0.1120 28 1 -0.3633 0.6077 0.8288 29 1 0.6380 1.4090 -2.7284 30 1 1.8786 1.8373 -1.5261 31 1 2.2773 1.8538 -3.2608 32 1 0.6195 -1.2470 -4.2974 33 1 1.2514 0.2929 -4.9280 34 1 1.8689 -1.2506 -5.5649 35 1 4.4501 -1.9068 -6.6621 36 1 1.2824 0.8609 2.4086 37 1 0.2790 -0.5984 2.3742 38 1 2.4989 -1.6221 3.4973 39 1 1.1791 -0.8776 4.4380 40 1 3.1211 0.2327 5.2370 41 1 2.4426 1.3672 4.0554 42 1 4.6531 -0.5885 3.5724 43 1 4.8314 1.1524 3.8568 44 1 4.9240 0.9536 1.4915 45 1 3.2353 1.4368 1.8011 46 1 3.8551 -1.4685 1.8689 47 1 3.9120 -0.6792 0.2841 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155804939.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:39 Heat of formation + Delta-G solvation = -32.331155 kcal Electronic energy + Delta-G solvation = -24157.403301 eV Core-core repulsion = 20954.167202 eV Total energy + Delta-G solvation = -3203.236099 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.98608 -38.40102 -35.38545 -34.69883 -32.81874 -32.16755 -30.73244 -29.06694 -26.31285 -26.00551 -25.20812 -24.93681 -23.34225 -21.04753 -20.50772 -19.38465 -17.93904 -16.84024 -16.43436 -16.01440 -15.73486 -15.30969 -14.66449 -14.28604 -14.03389 -13.92717 -13.63382 -13.13296 -12.94814 -12.75742 -12.46948 -12.32824 -12.11051 -11.90014 -11.72380 -11.67429 -11.51843 -11.34091 -11.08480 -11.01863 -10.81971 -10.78265 -10.63051 -10.60255 -10.58923 -10.24138 -10.15047 -10.14034 -9.14071 -8.75947 -8.39970 -7.86996 -7.50397 -6.04972 -4.12894 3.26778 3.33884 3.36073 3.47431 3.72746 4.22907 4.42767 4.60677 4.67581 4.88862 5.10477 5.12126 5.18612 5.25489 5.27828 5.36104 5.41433 5.45290 5.60338 5.65835 5.76498 5.80236 5.85913 5.92177 5.93456 6.02194 6.05012 6.07113 6.10958 6.17691 6.26836 6.28099 6.41332 6.47461 6.79156 6.87545 7.09960 7.20070 7.35962 7.51340 7.59954 7.75345 8.06573 8.23942 8.61099 8.87399 9.18977 9.53871 11.00240 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022267 B = 0.004747 C = 0.004256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.151987 B = 5897.373451 C = 6577.044959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.067 3.933 3 H 0.056 0.944 4 C 0.509 3.491 5 O -0.532 6.532 6 N -0.595 5.595 7 C 0.083 3.917 8 C 0.259 3.741 9 H 0.063 0.937 10 C -0.145 4.145 11 C -0.524 4.524 12 H 0.058 0.942 13 C 0.065 3.935 14 N -0.887 5.887 15 Si 0.897 3.103 16 H -0.280 1.280 17 H -0.275 1.275 18 H -0.285 1.285 19 N -0.526 5.526 20 C 0.066 3.934 21 C -0.122 4.122 22 C -0.119 4.119 23 C -0.117 4.117 24 C -0.149 4.149 25 C 0.061 3.939 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.060 0.940 29 H 0.042 0.958 30 H 0.051 0.949 31 H 0.079 0.921 32 H 0.010 0.990 33 H 0.028 0.972 34 H 0.092 0.908 35 H 0.263 0.737 36 H 0.030 0.970 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.068 0.932 40 H 0.058 0.942 41 H 0.056 0.944 42 H 0.062 0.938 43 H 0.055 0.945 44 H 0.068 0.932 45 H 0.060 0.940 46 H 0.074 0.926 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.319 6.992 16.115 18.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.044 4.044 3 H 0.074 0.926 4 C 0.294 3.706 5 O -0.409 6.409 6 N -0.328 5.328 7 C -0.061 4.061 8 C 0.159 3.841 9 H 0.080 0.920 10 C -0.204 4.204 11 C -0.563 4.563 12 H 0.076 0.924 13 C -0.137 4.137 14 N -0.525 5.525 15 Si 0.725 3.275 16 H -0.206 1.206 17 H -0.200 1.200 18 H -0.211 1.211 19 N -0.252 5.252 20 C -0.061 4.061 21 C -0.159 4.159 22 C -0.156 4.156 23 C -0.155 4.155 24 C -0.188 4.188 25 C -0.066 4.066 26 H 0.084 0.916 27 H 0.089 0.911 28 H 0.079 0.921 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.098 0.902 32 H 0.029 0.971 33 H 0.047 0.953 34 H 0.111 0.889 35 H 0.073 0.927 36 H 0.048 0.952 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.087 0.913 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.081 0.919 43 H 0.074 0.926 44 H 0.087 0.913 45 H 0.079 0.921 46 H 0.092 0.908 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.198 5.770 15.925 17.718 hybrid contribution 1.033 1.535 -0.415 1.896 sum -4.165 7.304 15.510 17.643 Atomic orbital electron populations 1.21812 0.92797 1.03191 1.02118 1.21627 0.96563 0.95855 0.90381 0.92630 1.20160 0.79025 0.87341 0.84070 1.90648 1.48780 1.16616 1.84823 1.48240 1.63052 1.11243 1.10258 1.21627 0.99187 0.83621 1.01658 1.18896 0.91546 0.94527 0.79146 0.91958 1.22075 0.96487 0.99281 1.02551 1.21314 1.10857 1.13197 1.10952 0.92385 1.24887 0.97423 0.94956 0.96480 1.69882 1.40200 1.22689 1.19754 0.86518 0.82778 0.79285 0.78932 1.20648 1.20000 1.21098 1.61530 1.04813 1.57918 1.00919 1.21773 0.97979 0.97311 0.89055 1.21440 0.98894 0.99399 0.96201 1.20597 0.96478 0.99018 0.99521 1.20550 0.97648 1.01898 0.95379 1.21951 1.01729 0.99364 0.95752 1.21862 0.86487 0.96324 1.01955 0.91611 0.91139 0.92111 0.93976 0.93049 0.90226 0.97062 0.95273 0.88930 0.92717 0.95228 0.91011 0.90445 0.91292 0.92365 0.92500 0.91918 0.92591 0.91292 0.92087 0.90811 0.90597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 8.20 37.16 0.30 -1.58 16 2 C 0.07 1.07 1.72 -68.86 -0.12 0.96 16 3 H 0.06 0.83 5.73 -51.93 -0.30 0.53 16 4 C 0.51 10.75 5.71 -10.98 -0.06 10.68 16 5 O -0.53 -13.51 15.18 5.55 0.08 -13.42 16 6 N -0.60 -12.84 2.75 -175.26 -0.48 -13.32 16 7 C 0.08 1.42 8.69 59.85 0.52 1.94 16 8 C 0.26 6.69 2.64 -69.08 -0.18 6.51 16 9 H 0.06 1.88 6.90 -51.93 -0.36 1.52 16 10 C -0.15 -3.53 8.97 37.16 0.33 -3.20 16 11 C -0.52 -14.22 7.99 -34.44 -0.28 -14.49 16 12 H 0.06 1.55 7.33 -52.48 -0.38 1.16 16 13 C 0.06 1.78 5.30 -17.82 -0.09 1.68 16 14 N -0.89 -25.27 11.32 55.43 0.63 -24.64 16 15 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 16 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 19 N -0.53 -8.03 4.24 -229.31 -0.97 -9.00 16 20 C 0.07 0.77 3.83 -4.49 -0.02 0.75 16 21 C -0.12 -1.23 5.63 -27.33 -0.15 -1.38 16 22 C -0.12 -1.10 5.30 -29.42 -0.16 -1.25 16 23 C -0.12 -1.20 5.30 -29.42 -0.16 -1.35 16 24 C -0.15 -1.84 5.56 -27.32 -0.15 -1.99 16 25 C 0.06 0.93 4.76 -4.50 -0.02 0.91 16 26 H 0.06 0.85 7.24 -51.93 -0.38 0.48 16 27 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.06 0.64 6.92 -51.93 -0.36 0.29 16 29 H 0.04 0.64 7.80 -51.93 -0.40 0.23 16 30 H 0.05 0.73 5.90 -51.93 -0.31 0.43 16 31 H 0.08 1.44 7.02 -51.92 -0.36 1.07 16 32 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.03 0.65 7.67 -51.93 -0.40 0.25 16 34 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 35 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 36 H 0.03 0.33 6.44 -51.93 -0.33 -0.01 16 37 H 0.07 0.80 7.02 -51.93 -0.36 0.44 16 38 H 0.08 0.89 7.08 -51.93 -0.37 0.52 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 41 H 0.06 0.52 7.52 -51.93 -0.39 0.13 16 42 H 0.06 0.65 7.52 -51.93 -0.39 0.26 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 45 H 0.06 0.75 6.61 -51.94 -0.34 0.41 16 46 H 0.07 1.11 6.59 -51.92 -0.34 0.77 16 47 H 0.08 1.43 6.39 -51.93 -0.33 1.10 16 LS Contribution 344.85 15.07 5.20 5.20 Total: -1.00 -30.77 344.85 -8.90 -39.67 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -8.10 Total: 1.25 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: -0.23 Total: -1.81 kcal Atomic # 7 Polarization: -46.14 SS G_CDS: -0.83 Total: -46.97 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: 0.08 Total: -13.42 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.77 -8.90 -39.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155804939.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.341 kcal (2) G-P(sol) polarization free energy of solvation -30.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds