Wall clock time and date at job start Tue Mar 31 2020 05:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46992 * 2 1 4 4 C 1.50701 * 109.46738 * 240.00220 * 2 1 3 5 5 O 1.21284 * 119.99957 * 262.13618 * 4 2 1 6 6 N 1.34778 * 120.00208 * 82.13314 * 4 2 1 7 7 C 1.46501 * 119.99664 * 0.02562 * 6 4 2 8 8 C 1.46497 * 120.00163 * 179.97438 * 6 4 2 9 9 H 1.08997 * 109.47353 * 0.02562 * 8 6 4 10 10 C 1.53003 * 109.46995 * 120.00427 * 8 6 4 11 11 C 1.50698 * 109.47458 * 240.00375 * 8 6 4 12 12 H 1.08003 * 119.99811 * 0.02562 * 11 8 6 13 13 C 1.37878 * 120.00125 * 180.02562 * 11 8 6 14 14 N 1.31515 * 120.00019 * 359.97438 * 13 11 8 15 15 Si 1.86803 * 119.99990 * 180.02562 * 13 11 8 16 16 H 1.48500 * 109.47182 * 269.99961 * 15 13 11 17 17 H 1.48500 * 109.47111 * 29.99978 * 15 13 11 18 18 H 1.48500 * 109.46892 * 149.99834 * 15 13 11 19 19 N 1.46898 * 109.47416 * 120.00372 * 2 1 3 20 20 C 1.48004 * 110.99636 * 313.25789 * 19 2 1 21 21 C 1.50442 * 112.82311 * 191.34998 * 20 19 2 22 22 C 1.54305 * 108.50656 * 93.72313 * 21 20 19 23 23 C 1.45881 * 112.18630 * 281.46719 * 22 21 20 24 24 C 1.54305 * 112.18537 * 61.11675 * 23 22 21 25 25 C 1.47990 * 111.00073 * 184.53774 * 19 2 1 26 26 H 1.09003 * 109.47350 * 66.25200 * 1 2 3 27 27 H 1.08997 * 109.47488 * 186.25700 * 1 2 3 28 28 H 1.09004 * 109.47018 * 306.25296 * 1 2 3 29 29 H 1.08994 * 109.47352 * 269.99611 * 7 6 4 30 30 H 1.08998 * 109.46999 * 30.00209 * 7 6 4 31 31 H 1.09009 * 109.46800 * 149.99405 * 7 6 4 32 32 H 1.09001 * 109.46868 * 300.00128 * 10 8 6 33 33 H 1.08997 * 109.46841 * 59.99967 * 10 8 6 34 34 H 1.08997 * 109.47028 * 180.02562 * 10 8 6 35 35 H 0.96996 * 120.00053 * 179.97438 * 14 13 11 36 36 H 1.09003 * 108.80782 * 312.20346 * 20 19 2 37 37 H 1.08993 * 108.81947 * 70.48093 * 20 19 2 38 38 H 1.09007 * 109.63461 * 334.01535 * 21 20 19 39 39 H 1.09004 * 109.63048 * 213.42706 * 21 20 19 40 40 H 1.09007 * 108.94243 * 160.76257 * 22 21 20 41 41 H 1.09003 * 108.93981 * 42.16081 * 22 21 20 42 42 H 1.09002 * 108.93305 * 300.41754 * 23 22 21 43 43 H 1.09000 * 108.93778 * 181.82004 * 23 22 21 44 44 H 1.09005 * 109.62840 * 161.76617 * 24 23 22 45 45 H 1.08989 * 109.63670 * 41.16566 * 24 23 22 46 46 H 1.09007 * 108.81360 * 205.70369 * 25 19 2 47 47 H 1.09006 * 108.80975 * 323.96705 * 25 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2305 5 8 2.3698 -1.8734 -1.1640 6 7 2.1062 -0.0534 -2.4050 7 6 1.6989 1.3516 -2.4852 8 6 2.5950 -0.7438 -3.6011 9 1 2.8486 -1.7732 -3.3482 10 6 1.5054 -0.7365 -4.6751 11 6 3.8198 -0.0380 -4.1233 12 1 4.1968 0.8371 -3.6148 13 6 4.4592 -0.5095 -5.2502 14 7 4.0005 -1.5754 -5.8691 15 14 5.9779 0.3650 -5.8971 16 1 5.5704 1.4113 -6.8689 17 1 6.7051 0.9958 -4.7665 18 1 6.8654 -0.6171 -6.5702 19 7 2.0197 -0.6926 1.1994 20 6 1.3038 -0.2290 2.4089 21 6 1.9468 -0.7011 3.6845 22 6 2.9161 0.3931 4.1785 23 6 4.1772 0.3838 3.4452 24 6 3.9772 0.6503 1.9386 25 6 3.4950 -0.6183 1.2894 26 1 -0.3634 0.4139 -0.9407 27 1 -0.3634 -1.0215 0.1120 28 1 -0.3633 0.6077 0.8288 29 1 0.6380 1.4090 -2.7284 30 1 1.8786 1.8373 -1.5261 31 1 2.2773 1.8538 -3.2608 32 1 0.6195 -1.2470 -4.2974 33 1 1.2514 0.2929 -4.9280 34 1 1.8689 -1.2506 -5.5649 35 1 4.4501 -1.9068 -6.6621 36 1 1.2824 0.8609 2.4086 37 1 0.2790 -0.5984 2.3742 38 1 2.4989 -1.6221 3.4973 39 1 1.1791 -0.8776 4.4380 40 1 3.1211 0.2327 5.2370 41 1 2.4426 1.3672 4.0554 42 1 4.6531 -0.5885 3.5724 43 1 4.8314 1.1524 3.8568 44 1 4.9240 0.9536 1.4915 45 1 3.2353 1.4368 1.8011 46 1 3.8551 -1.4685 1.8689 47 1 3.9120 -0.6792 0.2841 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155804939.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:38 Heat of formation + Delta-G solvation = -52.048701 kcal Electronic energy + Delta-G solvation = -24158.258318 eV Core-core repulsion = 20954.167202 eV Total energy + Delta-G solvation = -3204.091116 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.33521 -39.72079 -37.11318 -35.95579 -34.74142 -33.12244 -32.11757 -30.74434 -27.61218 -27.30820 -27.21735 -26.02914 -24.65315 -22.61162 -21.44826 -20.60819 -19.48071 -18.50533 -18.17810 -17.33948 -16.99727 -16.82032 -16.20844 -15.75081 -15.35998 -15.09170 -14.68204 -14.50903 -14.33963 -14.10422 -13.93368 -13.56165 -13.40878 -13.21049 -13.08560 -12.98621 -12.93255 -12.85936 -12.68047 -12.61961 -12.53051 -12.21823 -12.13576 -12.04086 -11.75506 -11.50893 -11.41704 -11.18845 -11.07566 -10.58859 -10.35836 -9.28705 -9.01071 -8.14653 -6.31421 1.39664 1.41566 1.51232 1.86508 2.26204 2.44429 2.95048 3.12961 3.68921 3.72970 3.84886 3.98782 4.05777 4.17003 4.19461 4.36910 4.44228 4.47064 4.54680 4.65880 4.71611 4.75478 4.78564 4.83048 4.83347 4.90166 4.92461 5.00130 5.03953 5.07708 5.10900 5.22704 5.23750 5.29353 5.33973 5.41581 5.47266 5.49256 5.60938 5.67992 6.01223 6.12462 6.17168 6.30112 6.76924 6.89692 7.34449 7.56486 8.89705 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022267 B = 0.004747 C = 0.004256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.151987 B = 5897.373451 C = 6577.044959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.080 3.920 3 H 0.074 0.926 4 C 0.499 3.501 5 O -0.589 6.589 6 N -0.603 5.603 7 C 0.080 3.920 8 C 0.263 3.737 9 H 0.004 0.996 10 C -0.130 4.130 11 C -0.537 4.537 12 H 0.059 0.941 13 C 0.015 3.985 14 N -0.918 5.918 15 Si 0.965 3.035 16 H -0.266 1.266 17 H -0.272 1.272 18 H -0.286 1.286 19 N -0.548 5.548 20 C 0.065 3.935 21 C -0.121 4.121 22 C -0.116 4.116 23 C -0.113 4.113 24 C -0.142 4.142 25 C 0.070 3.930 26 H 0.070 0.930 27 H 0.054 0.946 28 H 0.098 0.902 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.018 0.982 33 H 0.047 0.953 34 H 0.066 0.934 35 H 0.264 0.736 36 H 0.046 0.954 37 H 0.080 0.920 38 H 0.057 0.943 39 H 0.090 0.910 40 H 0.075 0.925 41 H 0.067 0.933 42 H 0.055 0.945 43 H 0.071 0.929 44 H 0.062 0.938 45 H 0.068 0.932 46 H 0.066 0.934 47 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.152 9.931 18.030 21.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.031 4.031 3 H 0.091 0.909 4 C 0.287 3.713 5 O -0.469 6.469 6 N -0.334 5.334 7 C -0.062 4.062 8 C 0.161 3.839 9 H 0.022 0.978 10 C -0.189 4.189 11 C -0.575 4.575 12 H 0.077 0.923 13 C -0.185 4.185 14 N -0.557 5.557 15 Si 0.790 3.210 16 H -0.191 1.191 17 H -0.196 1.196 18 H -0.212 1.212 19 N -0.275 5.275 20 C -0.061 4.061 21 C -0.158 4.158 22 C -0.153 4.153 23 C -0.150 4.150 24 C -0.181 4.181 25 C -0.058 4.058 26 H 0.089 0.911 27 H 0.073 0.927 28 H 0.116 0.884 29 H 0.086 0.914 30 H 0.102 0.898 31 H 0.087 0.913 32 H 0.037 0.963 33 H 0.066 0.934 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.098 0.902 38 H 0.075 0.925 39 H 0.109 0.891 40 H 0.093 0.907 41 H 0.085 0.915 42 H 0.074 0.926 43 H 0.089 0.911 44 H 0.081 0.919 45 H 0.087 0.913 46 H 0.084 0.916 47 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -6.057 8.755 17.859 20.791 hybrid contribution 1.286 0.546 -0.988 1.711 sum -4.771 9.301 16.871 19.847 Atomic orbital electron populations 1.21827 0.90336 1.03123 1.04003 1.21536 0.98172 0.95479 0.87938 0.90864 1.21225 0.77788 0.86962 0.85325 1.90610 1.51159 1.19385 1.85751 1.48249 1.62835 1.13040 1.09297 1.21871 1.00403 0.80748 1.03219 1.18478 0.92242 0.92053 0.81132 0.97778 1.21851 0.96039 1.00046 1.00923 1.21554 1.11590 1.13250 1.11132 0.92263 1.25742 1.00379 0.95597 0.96751 1.70031 1.41519 1.24002 1.20112 0.85460 0.78881 0.78276 0.78411 1.19097 1.19648 1.21160 1.61460 1.04738 1.59086 1.02197 1.21914 0.97922 0.98308 0.87913 1.21459 0.99499 0.98819 0.96052 1.20581 0.95512 0.99039 1.00186 1.20522 0.98767 1.02038 0.93702 1.21872 1.01386 0.97666 0.97172 1.21695 0.86980 0.97867 0.99245 0.91068 0.92673 0.88367 0.91402 0.89837 0.91326 0.96298 0.93422 0.91514 0.92666 0.93557 0.90187 0.92471 0.89101 0.90680 0.91457 0.92638 0.91065 0.91889 0.91319 0.91602 0.95320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 8.20 71.98 0.59 -2.65 16 2 C 0.08 2.45 1.72 44.17 0.08 2.53 16 3 H 0.07 1.97 5.73 -2.39 -0.01 1.96 16 4 C 0.50 21.64 5.71 87.66 0.50 22.14 16 5 O -0.59 -31.85 15.18 -3.04 -0.05 -31.89 16 6 N -0.60 -26.34 2.75 -826.80 -2.28 -28.61 16 7 C 0.08 2.57 8.69 127.77 1.11 3.68 16 8 C 0.26 14.15 2.64 44.25 0.12 14.26 16 9 H 0.00 0.27 6.90 -2.39 -0.02 0.26 16 10 C -0.13 -6.45 8.97 71.98 0.65 -5.81 16 11 C -0.54 -29.79 7.99 25.60 0.20 -29.58 16 12 H 0.06 3.19 7.33 -2.91 -0.02 3.17 16 13 C 0.01 0.82 5.30 84.65 0.45 1.27 16 14 N -0.92 -53.95 11.32 21.45 0.24 -53.70 16 15 Si 0.96 43.65 29.54 68.60 2.03 45.67 16 16 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 17 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 18 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 19 N -0.55 -16.37 4.24 -879.39 -3.73 -20.11 16 20 C 0.07 1.34 3.83 85.26 0.33 1.67 16 21 C -0.12 -2.12 5.63 30.21 0.17 -1.95 16 22 C -0.12 -1.75 5.30 28.85 0.15 -1.59 16 23 C -0.11 -2.05 5.30 28.85 0.15 -1.90 16 24 C -0.14 -3.33 5.56 30.21 0.17 -3.16 16 25 C 0.07 2.18 4.76 85.27 0.41 2.59 16 26 H 0.07 1.63 7.24 -2.39 -0.02 1.61 16 27 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.10 1.64 6.92 -2.38 -0.02 1.62 16 29 H 0.07 1.85 7.80 -2.39 -0.02 1.83 16 30 H 0.08 2.13 5.90 -2.39 -0.01 2.12 16 31 H 0.07 2.37 7.02 -2.38 -0.02 2.36 16 32 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.05 2.13 7.67 -2.39 -0.02 2.11 16 34 H 0.07 3.67 6.07 -2.39 -0.01 3.65 16 35 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 36 H 0.05 0.82 6.44 -2.39 -0.02 0.80 16 37 H 0.08 1.52 7.02 -2.39 -0.02 1.51 16 38 H 0.06 1.26 7.08 -2.38 -0.02 1.24 16 39 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.07 0.92 8.14 -2.38 -0.02 0.91 16 41 H 0.07 0.92 7.52 -2.39 -0.02 0.90 16 42 H 0.05 1.09 7.52 -2.39 -0.02 1.07 16 43 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 45 H 0.07 1.50 6.61 -2.39 -0.02 1.48 16 46 H 0.07 2.09 6.59 -2.38 -0.02 2.07 16 47 H 0.03 1.14 6.39 -2.38 -0.02 1.13 16 Total: -1.00 -71.69 344.85 2.22 -69.47 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: 0.93 Total: 17.66 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: 5.07 Total: 1.51 kcal Atomic # 7 Polarization: -96.66 SS G_CDS: -5.77 Total: -102.42 kcal Atomic # 8 Polarization: -31.85 SS G_CDS: -0.05 Total: -31.89 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Total: -71.69 2.22 -69.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155804939.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.419 kcal (2) G-P(sol) polarization free energy of solvation -71.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds