Wall clock time and date at job start Tue Mar 31 2020 05:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47006 * 2 1 4 4 C 1.50698 * 109.47156 * 240.00353 * 2 1 3 5 5 H 1.08002 * 120.00143 * 239.99672 * 4 2 1 6 6 C 1.37874 * 120.00084 * 59.99760 * 4 2 1 7 7 N 1.31512 * 120.00126 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00108 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46987 * 60.00188 * 8 6 4 10 10 H 1.48499 * 109.47062 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47278 * 300.00466 * 8 6 4 12 12 N 1.46497 * 109.47345 * 120.00127 * 2 1 3 13 13 C 1.46499 * 119.99852 * 60.00032 * 12 2 1 14 14 C 1.34777 * 120.00297 * 240.00300 * 12 2 1 15 15 O 1.21283 * 119.99788 * 359.97438 * 14 12 2 16 16 C 1.50694 * 120.00283 * 179.97438 * 14 12 2 17 17 H 1.08998 * 109.47309 * 322.13925 * 16 14 12 18 18 C 1.53003 * 109.46831 * 82.13561 * 16 14 12 19 19 N 1.46902 * 109.47270 * 202.13574 * 16 14 12 20 20 C 1.48005 * 111.00124 * 193.25752 * 19 16 14 21 21 C 1.50441 * 112.82563 * 191.34755 * 20 19 16 22 22 C 1.54309 * 108.50223 * 93.72876 * 21 20 19 23 23 C 1.45880 * 112.18477 * 281.46655 * 22 21 20 24 24 C 1.54300 * 112.18750 * 61.11667 * 23 22 21 25 25 C 1.48000 * 110.99708 * 64.54050 * 19 16 14 26 26 H 1.09006 * 109.46659 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47404 * 299.99230 * 1 2 3 28 28 H 1.09000 * 109.47097 * 60.00110 * 1 2 3 29 29 H 0.96999 * 120.00278 * 179.97438 * 7 6 4 30 30 H 1.09001 * 109.47158 * 90.00109 * 13 12 2 31 31 H 1.08998 * 109.47378 * 210.00112 * 13 12 2 32 32 H 1.08994 * 109.47401 * 330.00483 * 13 12 2 33 33 H 1.09001 * 109.46991 * 186.25159 * 18 16 14 34 34 H 1.08996 * 109.47580 * 306.25209 * 18 16 14 35 35 H 1.09002 * 109.46846 * 66.25743 * 18 16 14 36 36 H 1.09003 * 108.80648 * 312.21113 * 20 19 16 37 37 H 1.08999 * 108.81115 * 70.48002 * 20 19 16 38 38 H 1.08990 * 109.63280 * 334.02398 * 21 20 19 39 39 H 1.09003 * 109.63074 * 213.42701 * 21 20 19 40 40 H 1.09001 * 108.94185 * 160.76325 * 22 21 20 41 41 H 1.09004 * 108.93791 * 42.15644 * 22 21 20 42 42 H 1.09005 * 108.93250 * 300.42007 * 23 22 21 43 43 H 1.08999 * 108.94016 * 181.81625 * 23 22 21 44 44 H 1.09007 * 109.63411 * 161.76375 * 24 23 22 45 45 H 1.09000 * 109.63438 * 41.16864 * 24 23 22 46 46 H 1.09000 * 108.80737 * 205.70114 * 25 19 16 47 47 H 1.09002 * 108.81363 * 323.97088 * 25 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3225 -1.1193 -4.0080 9 1 1.8281 -2.5196 -4.0083 10 1 1.8279 -0.4190 -5.2204 11 1 3.8076 -1.1188 -4.0078 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0932 1.4279 14 6 2.7932 -0.0357 2.0833 15 8 3.0865 1.1254 1.8912 16 6 3.2951 -0.7459 3.3140 17 1 2.5186 -1.4109 3.6918 18 6 4.5387 -1.5636 2.9593 19 7 3.6370 0.2431 4.3450 20 6 4.4209 -0.3775 5.4363 21 6 4.5614 0.5185 6.6365 22 6 3.4322 0.1828 7.6332 23 6 2.1576 0.7739 7.2410 24 6 1.6733 0.2580 5.8698 25 6 2.4343 0.9807 4.7919 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 0.7087 1.1614 -3.4843 30 1 2.4158 -2.7377 0.9715 31 1 1.6239 -2.2853 2.5000 32 1 0.6906 -2.3003 0.9845 33 1 4.8366 -2.1634 3.8194 34 1 4.3143 -2.2202 2.1187 35 1 5.3512 -0.8898 2.6874 36 1 3.9278 -1.3002 5.7422 37 1 5.4148 -0.6207 5.0607 38 1 4.4791 1.5604 6.3273 39 1 5.5291 0.3490 7.1088 40 1 3.7076 0.5573 8.6191 41 1 3.3183 -0.9000 7.6871 42 1 2.2702 1.8570 7.1918 43 1 1.4084 0.5317 7.9948 44 1 0.6068 0.4551 5.7601 45 1 1.8603 -0.8133 5.7947 46 1 2.7407 1.9555 5.1714 47 1 1.7755 1.1302 3.9365 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155805049.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:41 Heat of formation + Delta-G solvation = -31.350718 kcal Electronic energy + Delta-G solvation = -24106.168974 eV Core-core repulsion = 20902.975390 eV Total energy + Delta-G solvation = -3203.193584 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.00520 -38.41791 -35.39757 -34.70842 -32.81271 -32.20675 -30.74414 -29.04289 -26.32803 -26.04755 -25.21326 -24.95265 -23.35612 -21.04681 -20.52616 -19.37814 -17.98205 -16.86045 -16.52522 -15.95253 -15.69116 -15.27517 -14.65077 -14.39292 -14.00856 -13.96593 -13.67371 -13.17042 -13.05256 -12.68599 -12.52733 -12.36440 -12.11661 -11.84783 -11.72684 -11.71343 -11.48512 -11.35466 -11.05184 -10.97504 -10.85443 -10.78952 -10.69011 -10.63616 -10.59512 -10.23318 -10.19818 -10.12242 -9.13309 -8.76736 -8.38578 -7.88674 -7.50373 -6.03474 -4.11292 3.29917 3.35057 3.36430 3.48192 3.69244 4.23463 4.43779 4.56989 4.64450 4.86168 5.07143 5.09846 5.17401 5.24274 5.28426 5.35579 5.38637 5.43634 5.57603 5.64846 5.76140 5.79775 5.84715 5.89617 5.91617 5.99446 6.01567 6.07720 6.10093 6.14623 6.24663 6.27006 6.36762 6.43538 6.78570 6.84759 7.08371 7.17800 7.33458 7.51515 7.59144 7.75904 8.06563 8.24559 8.61235 8.88812 9.18885 9.55429 11.01732 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032217 B = 0.004183 C = 0.004000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.896225 B = 6692.097785 C = 6998.492547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.259 3.741 3 H 0.063 0.937 4 C -0.524 4.524 5 H 0.058 0.942 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.596 5.596 13 C 0.086 3.914 14 C 0.509 3.491 15 O -0.532 6.532 16 C 0.068 3.932 17 H 0.055 0.945 18 C -0.142 4.142 19 N -0.526 5.526 20 C 0.066 3.934 21 C -0.122 4.122 22 C -0.119 4.119 23 C -0.117 4.117 24 C -0.149 4.149 25 C 0.062 3.938 26 H 0.029 0.971 27 H 0.010 0.990 28 H 0.093 0.907 29 H 0.263 0.737 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.071 0.929 33 H 0.059 0.941 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.030 0.970 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.062 0.938 43 H 0.055 0.945 44 H 0.067 0.933 45 H 0.061 0.939 46 H 0.074 0.926 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.769 -5.336 18.179 19.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.159 3.841 3 H 0.081 0.919 4 C -0.563 4.563 5 H 0.076 0.924 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.725 3.275 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.203 1.203 12 N -0.328 5.328 13 C -0.058 4.058 14 C 0.294 3.706 15 O -0.409 6.409 16 C -0.043 4.043 17 H 0.073 0.927 18 C -0.200 4.200 19 N -0.252 5.252 20 C -0.061 4.061 21 C -0.159 4.159 22 C -0.157 4.157 23 C -0.154 4.154 24 C -0.188 4.188 25 C -0.065 4.065 26 H 0.048 0.952 27 H 0.029 0.971 28 H 0.112 0.888 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.048 0.952 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.087 0.913 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.081 0.919 43 H 0.074 0.926 44 H 0.086 0.914 45 H 0.080 0.920 46 H 0.092 0.908 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.119 -4.257 17.709 18.479 hybrid contribution -0.324 -1.267 -0.553 1.420 sum 2.795 -5.523 17.156 18.239 Atomic orbital electron populations 1.22091 0.98396 0.99239 1.00748 1.18894 0.90682 0.94522 0.79996 0.91938 1.21287 1.31717 1.12913 0.90344 0.92413 1.24887 0.94986 0.94984 0.98915 1.69867 1.36401 1.22634 1.23788 0.86570 0.79263 0.79543 0.82079 1.20288 1.21200 1.20256 1.48239 1.49269 1.11517 1.23812 1.21584 1.01524 0.83607 0.99071 1.20153 0.79107 0.87202 0.84140 1.90648 1.57121 1.16800 1.76284 1.21625 0.97816 0.92733 0.92150 0.92730 1.21813 0.97081 0.99433 1.01649 1.61524 1.23261 1.28587 1.11835 1.21777 0.98036 0.95607 0.90704 1.21440 0.98177 1.01374 0.94948 1.20599 0.95392 1.00798 0.98868 1.20545 0.97075 1.00884 0.96930 1.21961 1.00496 1.00634 0.95754 1.21847 0.90202 0.97193 0.97272 0.95200 0.97108 0.88838 0.92682 0.93369 0.93186 0.90994 0.92178 0.91406 0.91065 0.95209 0.90929 0.90448 0.91251 0.92336 0.92478 0.91916 0.92584 0.91400 0.92037 0.90798 0.90919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 8.95 37.16 0.33 -3.20 16 2 C 0.26 6.71 2.64 -69.08 -0.18 6.52 16 3 H 0.06 1.89 6.90 -51.93 -0.36 1.53 16 4 C -0.52 -14.31 8.37 -34.44 -0.29 -14.59 16 5 H 0.06 1.55 7.65 -52.49 -0.40 1.15 16 6 C 0.06 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -25.39 11.32 55.43 0.63 -24.76 16 8 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 9 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 12 N -0.60 -12.86 2.75 -175.27 -0.48 -13.34 16 13 C 0.09 1.47 8.94 59.85 0.53 2.00 16 14 C 0.51 10.75 5.71 -10.99 -0.06 10.69 16 15 O -0.53 -13.51 15.18 5.55 0.08 -13.43 16 16 C 0.07 1.09 1.72 -68.87 -0.12 0.97 16 17 H 0.06 0.79 5.73 -51.93 -0.30 0.49 16 18 C -0.14 -1.98 8.20 37.16 0.30 -1.68 16 19 N -0.53 -7.93 4.24 -229.30 -0.97 -8.90 16 20 C 0.07 0.76 3.83 -4.49 -0.02 0.75 16 21 C -0.12 -1.21 5.63 -27.32 -0.15 -1.36 16 22 C -0.12 -1.06 5.30 -29.42 -0.16 -1.21 16 23 C -0.12 -1.12 5.30 -29.42 -0.16 -1.27 16 24 C -0.15 -1.71 5.56 -27.33 -0.15 -1.86 16 25 C 0.06 0.90 4.76 -4.49 -0.02 0.88 16 26 H 0.03 0.66 6.66 -51.93 -0.35 0.31 16 27 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 28 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 29 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 30 H 0.05 0.79 7.80 -51.93 -0.40 0.38 16 31 H 0.05 0.69 5.90 -51.93 -0.31 0.38 16 32 H 0.07 1.24 6.43 -51.93 -0.33 0.90 16 33 H 0.06 0.66 6.91 -51.93 -0.36 0.31 16 34 H 0.07 0.96 7.24 -51.93 -0.38 0.58 16 35 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.03 0.33 6.44 -51.93 -0.33 -0.01 16 37 H 0.07 0.82 7.02 -51.93 -0.36 0.46 16 38 H 0.08 0.87 7.08 -51.93 -0.37 0.50 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.50 7.52 -51.93 -0.39 0.11 16 42 H 0.06 0.61 7.52 -51.93 -0.39 0.22 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.07 0.76 8.14 -51.92 -0.42 0.33 16 45 H 0.06 0.71 6.61 -51.93 -0.34 0.37 16 46 H 0.07 1.06 6.59 -51.93 -0.34 0.72 16 47 H 0.07 1.27 6.40 -51.93 -0.33 0.94 16 LS Contribution 344.16 15.07 5.19 5.19 Total: -1.00 -30.96 344.16 -8.84 -39.80 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -8.03 Total: 0.92 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: -0.23 Total: -1.69 kcal Atomic # 7 Polarization: -46.17 SS G_CDS: -0.83 Total: -47.00 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: 0.08 Total: -13.43 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.96 -8.84 -39.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155805049.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.449 kcal (2) G-P(sol) polarization free energy of solvation -30.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds