Wall clock time and date at job start Tue Mar 31 2020 05:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47006 * 2 1 4 4 C 1.50698 * 109.47156 * 240.00353 * 2 1 3 5 5 H 1.08002 * 120.00143 * 239.99672 * 4 2 1 6 6 C 1.37874 * 120.00084 * 59.99760 * 4 2 1 7 7 N 1.31512 * 120.00126 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00108 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46987 * 60.00188 * 8 6 4 10 10 H 1.48499 * 109.47062 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47278 * 300.00466 * 8 6 4 12 12 N 1.46497 * 109.47345 * 120.00127 * 2 1 3 13 13 C 1.46499 * 119.99852 * 60.00032 * 12 2 1 14 14 C 1.34777 * 120.00297 * 240.00300 * 12 2 1 15 15 O 1.21283 * 119.99788 * 359.97438 * 14 12 2 16 16 C 1.50694 * 120.00283 * 179.97438 * 14 12 2 17 17 H 1.08998 * 109.47309 * 322.13925 * 16 14 12 18 18 C 1.53003 * 109.46831 * 82.13561 * 16 14 12 19 19 N 1.46902 * 109.47270 * 202.13574 * 16 14 12 20 20 C 1.48005 * 111.00124 * 193.25752 * 19 16 14 21 21 C 1.50441 * 112.82563 * 191.34755 * 20 19 16 22 22 C 1.54309 * 108.50223 * 93.72876 * 21 20 19 23 23 C 1.45880 * 112.18477 * 281.46655 * 22 21 20 24 24 C 1.54300 * 112.18750 * 61.11667 * 23 22 21 25 25 C 1.48000 * 110.99708 * 64.54050 * 19 16 14 26 26 H 1.09006 * 109.46659 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47404 * 299.99230 * 1 2 3 28 28 H 1.09000 * 109.47097 * 60.00110 * 1 2 3 29 29 H 0.96999 * 120.00278 * 179.97438 * 7 6 4 30 30 H 1.09001 * 109.47158 * 90.00109 * 13 12 2 31 31 H 1.08998 * 109.47378 * 210.00112 * 13 12 2 32 32 H 1.08994 * 109.47401 * 330.00483 * 13 12 2 33 33 H 1.09001 * 109.46991 * 186.25159 * 18 16 14 34 34 H 1.08996 * 109.47580 * 306.25209 * 18 16 14 35 35 H 1.09002 * 109.46846 * 66.25743 * 18 16 14 36 36 H 1.09003 * 108.80648 * 312.21113 * 20 19 16 37 37 H 1.08999 * 108.81115 * 70.48002 * 20 19 16 38 38 H 1.08990 * 109.63280 * 334.02398 * 21 20 19 39 39 H 1.09003 * 109.63074 * 213.42701 * 21 20 19 40 40 H 1.09001 * 108.94185 * 160.76325 * 22 21 20 41 41 H 1.09004 * 108.93791 * 42.15644 * 22 21 20 42 42 H 1.09005 * 108.93250 * 300.42007 * 23 22 21 43 43 H 1.08999 * 108.94016 * 181.81625 * 23 22 21 44 44 H 1.09007 * 109.63411 * 161.76375 * 24 23 22 45 45 H 1.09000 * 109.63438 * 41.16864 * 24 23 22 46 46 H 1.09000 * 108.80737 * 205.70114 * 25 19 16 47 47 H 1.09002 * 108.81363 * 323.97088 * 25 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3225 -1.1193 -4.0080 9 1 1.8281 -2.5196 -4.0083 10 1 1.8279 -0.4190 -5.2204 11 1 3.8076 -1.1188 -4.0078 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0932 1.4279 14 6 2.7932 -0.0357 2.0833 15 8 3.0865 1.1254 1.8912 16 6 3.2951 -0.7459 3.3140 17 1 2.5186 -1.4109 3.6918 18 6 4.5387 -1.5636 2.9593 19 7 3.6370 0.2431 4.3450 20 6 4.4209 -0.3775 5.4363 21 6 4.5614 0.5185 6.6365 22 6 3.4322 0.1828 7.6332 23 6 2.1576 0.7739 7.2410 24 6 1.6733 0.2580 5.8698 25 6 2.4343 0.9807 4.7919 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 0.7087 1.1614 -3.4843 30 1 2.4158 -2.7377 0.9715 31 1 1.6239 -2.2853 2.5000 32 1 0.6906 -2.3003 0.9845 33 1 4.8366 -2.1634 3.8194 34 1 4.3143 -2.2202 2.1187 35 1 5.3512 -0.8898 2.6874 36 1 3.9278 -1.3002 5.7422 37 1 5.4148 -0.6207 5.0607 38 1 4.4791 1.5604 6.3273 39 1 5.5291 0.3490 7.1088 40 1 3.7076 0.5573 8.6191 41 1 3.3183 -0.9000 7.6871 42 1 2.2702 1.8570 7.1918 43 1 1.4084 0.5317 7.9948 44 1 0.6068 0.4551 5.7601 45 1 1.8603 -0.8133 5.7947 46 1 2.7407 1.9555 5.1714 47 1 1.7755 1.1302 3.9365 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155805049.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:41 Heat of formation + Delta-G solvation = -51.180065 kcal Electronic energy + Delta-G solvation = -24107.028839 eV Core-core repulsion = 20902.975390 eV Total energy + Delta-G solvation = -3204.053449 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.33948 -39.71897 -37.11967 -35.95520 -34.73779 -33.11939 -32.13057 -30.72334 -27.64658 -27.34111 -27.18386 -26.02873 -24.66597 -22.57199 -21.44132 -20.58696 -19.51619 -18.55808 -18.16005 -17.25775 -16.98748 -16.80810 -16.19437 -15.79242 -15.36605 -15.15269 -14.67933 -14.54184 -14.33947 -14.15336 -13.90621 -13.50735 -13.41837 -13.21069 -13.11582 -12.98307 -12.87882 -12.86097 -12.68540 -12.66491 -12.50341 -12.17333 -12.13628 -12.05460 -11.74428 -11.50265 -11.40870 -11.18672 -11.06632 -10.58109 -10.36199 -9.28997 -9.00421 -8.13515 -6.30461 1.41119 1.43976 1.51209 1.86803 2.24342 2.45878 2.95354 3.13982 3.68317 3.73714 3.85684 3.97520 4.05824 4.17779 4.19775 4.37361 4.44019 4.46422 4.54451 4.65512 4.67158 4.75237 4.79189 4.82862 4.84676 4.86288 4.91015 5.00137 5.04679 5.06857 5.11485 5.23136 5.24250 5.29923 5.34614 5.42162 5.46255 5.49850 5.62202 5.68872 6.01035 6.12514 6.17310 6.30455 6.77645 6.89507 7.35353 7.56316 8.90563 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032217 B = 0.004183 C = 0.004000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.896225 B = 6692.097785 C = 6998.492547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.263 3.737 3 H 0.004 0.996 4 C -0.537 4.537 5 H 0.060 0.940 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.965 3.035 9 H -0.261 1.261 10 H -0.284 1.284 11 H -0.277 1.277 12 N -0.603 5.603 13 C 0.083 3.917 14 C 0.499 3.501 15 O -0.588 6.588 16 C 0.082 3.918 17 H 0.078 0.922 18 C -0.137 4.137 19 N -0.551 5.551 20 C 0.065 3.935 21 C -0.121 4.121 22 C -0.116 4.116 23 C -0.113 4.113 24 C -0.142 4.142 25 C 0.070 3.930 26 H 0.048 0.952 27 H 0.017 0.983 28 H 0.067 0.933 29 H 0.264 0.736 30 H 0.058 0.942 31 H 0.088 0.912 32 H 0.070 0.930 33 H 0.099 0.901 34 H 0.066 0.934 35 H 0.051 0.949 36 H 0.047 0.953 37 H 0.076 0.924 38 H 0.057 0.943 39 H 0.089 0.911 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.055 0.945 43 H 0.072 0.928 44 H 0.067 0.933 45 H 0.068 0.932 46 H 0.065 0.935 47 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.338 -8.261 20.108 21.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.161 3.839 3 H 0.022 0.978 4 C -0.576 4.576 5 H 0.079 0.921 6 C -0.185 4.185 7 N -0.558 5.558 8 Si 0.790 3.210 9 H -0.186 1.186 10 H -0.209 1.209 11 H -0.203 1.203 12 N -0.334 5.334 13 C -0.060 4.060 14 C 0.287 3.713 15 O -0.469 6.469 16 C -0.029 4.029 17 H 0.096 0.904 18 C -0.194 4.194 19 N -0.277 5.277 20 C -0.060 4.060 21 C -0.158 4.158 22 C -0.153 4.153 23 C -0.151 4.151 24 C -0.181 4.181 25 C -0.058 4.058 26 H 0.067 0.933 27 H 0.036 0.964 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.107 0.893 32 H 0.088 0.912 33 H 0.117 0.883 34 H 0.085 0.915 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.095 0.905 38 H 0.076 0.924 39 H 0.107 0.893 40 H 0.092 0.908 41 H 0.085 0.915 42 H 0.074 0.926 43 H 0.090 0.910 44 H 0.086 0.914 45 H 0.087 0.913 46 H 0.084 0.916 47 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 3.684 -7.228 19.672 21.279 hybrid contribution -0.485 -0.278 -1.132 1.262 sum 3.199 -7.505 18.540 20.256 Atomic orbital electron populations 1.21866 0.97266 1.00052 0.99765 1.18476 0.91487 0.92061 0.81872 0.97765 1.21547 1.31863 1.13029 0.91148 0.92140 1.25751 0.95077 0.95640 1.02056 1.70021 1.37361 1.23955 1.24437 0.85512 0.78392 0.79035 0.78093 1.18553 1.20942 1.20306 1.48248 1.49250 1.13312 1.22617 1.21835 1.01601 0.80744 1.01773 1.21221 0.78003 0.86759 0.85318 1.90611 1.59054 1.19488 1.77728 1.21511 0.99135 0.92502 0.89788 0.90441 1.21821 0.95290 0.99013 1.03291 1.61442 1.23775 1.29231 1.13263 1.21901 0.97604 0.96390 0.90146 1.21454 0.99838 0.99817 0.94716 1.20581 0.94256 1.01360 0.99135 1.20523 0.98102 1.00494 0.95952 1.21884 0.99978 1.00531 0.95712 1.21710 0.89856 0.97638 0.96549 0.93285 0.96425 0.91433 0.92684 0.92384 0.89332 0.91152 0.88269 0.91465 0.93003 0.93454 0.90536 0.92429 0.89289 0.90756 0.91475 0.92608 0.90974 0.91428 0.91332 0.91624 0.95000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.49 8.95 71.98 0.64 -5.85 16 2 C 0.26 14.15 2.64 44.25 0.12 14.27 16 3 H 0.00 0.28 6.90 -2.39 -0.02 0.27 16 4 C -0.54 -29.84 8.37 25.60 0.21 -29.63 16 5 H 0.06 3.24 7.65 -2.91 -0.02 3.22 16 6 C 0.01 0.79 5.30 84.65 0.45 1.24 16 7 N -0.92 -54.08 11.32 21.45 0.24 -53.84 16 8 Si 0.96 43.66 29.54 68.60 2.03 45.68 16 9 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 10 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 11 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 12 N -0.60 -26.32 2.75 -826.82 -2.28 -28.60 16 13 C 0.08 2.66 8.94 127.77 1.14 3.80 16 14 C 0.50 21.62 5.71 87.65 0.50 22.12 16 15 O -0.59 -31.82 15.18 -3.04 -0.05 -31.86 16 16 C 0.08 2.51 1.72 44.17 0.08 2.58 16 17 H 0.08 2.00 5.73 -2.39 -0.01 1.99 16 18 C -0.14 -3.50 8.20 71.98 0.59 -2.91 16 19 N -0.55 -16.19 4.24 -879.38 -3.73 -19.92 16 20 C 0.07 1.34 3.83 85.26 0.33 1.67 16 21 C -0.12 -2.09 5.63 30.21 0.17 -1.92 16 22 C -0.12 -1.66 5.30 28.86 0.15 -1.51 16 23 C -0.11 -1.89 5.30 28.85 0.15 -1.74 16 24 C -0.14 -3.02 5.56 30.21 0.17 -2.85 16 25 C 0.07 2.06 4.76 85.27 0.41 2.46 16 26 H 0.05 2.18 6.66 -2.38 -0.02 2.17 16 27 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.07 3.71 6.07 -2.39 -0.01 3.70 16 29 H 0.26 14.75 8.31 -92.71 -0.77 13.97 16 30 H 0.06 1.76 7.80 -2.39 -0.02 1.74 16 31 H 0.09 2.14 5.90 -2.39 -0.01 2.13 16 32 H 0.07 2.28 6.43 -2.39 -0.02 2.27 16 33 H 0.10 1.78 6.91 -2.39 -0.02 1.76 16 34 H 0.07 1.73 7.24 -2.39 -0.02 1.72 16 35 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.05 0.82 6.44 -2.39 -0.02 0.81 16 37 H 0.08 1.51 7.02 -2.39 -0.02 1.50 16 38 H 0.06 1.24 7.08 -2.39 -0.02 1.23 16 39 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.07 0.87 7.52 -2.39 -0.02 0.85 16 42 H 0.06 1.01 7.52 -2.38 -0.02 1.00 16 43 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 45 H 0.07 1.36 6.61 -2.39 -0.02 1.35 16 46 H 0.07 1.97 6.59 -2.39 -0.02 1.96 16 47 H 0.03 1.17 6.40 -2.39 -0.02 1.16 16 Total: -1.00 -71.66 344.16 2.26 -69.40 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: 0.94 Total: 17.40 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: 5.11 Total: 1.73 kcal Atomic # 7 Polarization: -96.59 SS G_CDS: -5.77 Total: -102.35 kcal Atomic # 8 Polarization: -31.82 SS G_CDS: -0.05 Total: -31.86 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.68 kcal Total: -71.66 2.26 -69.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155805049.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.218 kcal (2) G-P(sol) polarization free energy of solvation -71.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds