Wall clock time and date at job start Tue Mar 31 2020 05:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47013 * 2 1 4 4 C 1.50706 * 109.47261 * 240.00393 * 2 1 3 5 5 H 1.08005 * 119.99723 * 273.40989 * 4 2 1 6 6 C 1.37871 * 120.00204 * 93.40324 * 4 2 1 7 7 N 1.31510 * 120.00235 * 181.85570 * 6 4 2 8 8 Si 1.86805 * 120.00060 * 1.85578 * 6 4 2 9 9 H 1.48498 * 109.47113 * 91.16677 * 8 6 4 10 10 H 1.48498 * 109.47418 * 211.17020 * 8 6 4 11 11 H 1.48499 * 109.46949 * 331.16832 * 8 6 4 12 12 N 1.46497 * 109.47317 * 120.00350 * 2 1 3 13 13 C 1.46499 * 120.00279 * 59.99895 * 12 2 1 14 14 C 1.34779 * 119.99858 * 239.99729 * 12 2 1 15 15 O 1.21280 * 120.00189 * 0.02562 * 14 12 2 16 16 C 1.50705 * 120.00147 * 179.97438 * 14 12 2 17 17 H 1.08996 * 109.46904 * 46.54617 * 16 14 12 18 18 C 1.53005 * 109.46974 * 286.54870 * 16 14 12 19 19 N 1.46893 * 109.47134 * 166.54732 * 16 14 12 20 20 C 1.48003 * 110.99907 * 199.85295 * 19 16 14 21 21 C 1.50445 * 112.82799 * 191.34586 * 20 19 16 22 22 C 1.54314 * 108.50070 * 93.72815 * 21 20 19 23 23 C 1.45875 * 112.18260 * 281.46413 * 22 21 20 24 24 C 1.54316 * 112.18656 * 61.12132 * 23 22 21 25 25 C 1.48001 * 111.00356 * 71.13466 * 19 16 14 26 26 H 1.09003 * 109.47295 * 54.73393 * 1 2 3 27 27 H 1.09001 * 109.46866 * 174.73419 * 1 2 3 28 28 H 1.08995 * 109.47123 * 294.73027 * 1 2 3 29 29 H 0.97000 * 119.99990 * 179.97438 * 7 6 4 30 30 H 1.08997 * 109.47370 * 270.00254 * 13 12 2 31 31 H 1.09001 * 109.46769 * 30.00299 * 13 12 2 32 32 H 1.09001 * 109.46896 * 149.99812 * 13 12 2 33 33 H 1.08996 * 109.47224 * 61.90852 * 18 16 14 34 34 H 1.08998 * 109.47090 * 181.91279 * 18 16 14 35 35 H 1.08999 * 109.46739 * 301.91256 * 18 16 14 36 36 H 1.09001 * 108.81286 * 312.21149 * 20 19 16 37 37 H 1.09001 * 108.81118 * 70.48226 * 20 19 16 38 38 H 1.08997 * 109.63055 * 334.02525 * 21 20 19 39 39 H 1.08997 * 109.63082 * 213.43274 * 21 20 19 40 40 H 1.08997 * 108.94041 * 160.76560 * 22 21 20 41 41 H 1.09001 * 108.93669 * 42.16206 * 22 21 20 42 42 H 1.09003 * 108.94045 * 300.42096 * 23 22 21 43 43 H 1.09003 * 108.93613 * 181.81544 * 23 22 21 44 44 H 1.08997 * 109.62784 * 161.75715 * 24 23 22 45 45 H 1.09004 * 109.63209 * 41.16434 * 24 23 22 46 46 H 1.08998 * 108.81152 * 205.70009 * 25 19 16 47 47 H 1.09002 * 108.81141 * 323.97700 * 25 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.1599 -1.7828 -1.2207 6 6 2.3290 0.0088 -2.3689 7 7 2.7325 -0.6148 -3.4541 8 14 2.1577 1.8689 -2.3697 9 1 3.4494 2.4851 -1.9735 10 1 1.7856 2.3312 -3.7309 11 1 1.1019 2.2692 -1.4052 12 7 2.0183 -0.6907 1.1961 13 6 1.6645 -2.0932 1.4279 14 6 2.7932 -0.0357 2.0832 15 8 3.0859 1.1256 1.8916 16 6 3.2952 -0.7459 3.3140 17 1 3.6920 -1.7217 3.0339 18 6 2.1422 -0.9290 4.3030 19 7 4.3566 0.0525 3.9415 20 6 5.1880 -0.7815 4.8379 21 6 6.1084 0.0330 5.7056 22 6 5.4071 0.2919 7.0555 23 6 4.4167 1.3592 6.9658 24 6 3.2900 1.0261 5.9654 25 6 3.8014 1.2710 4.5719 26 1 -0.3634 0.5934 -0.8391 27 1 -0.3633 -1.0234 -0.0943 28 1 -0.3633 0.4299 0.9334 29 1 2.9408 -0.1089 -4.2551 30 1 0.7376 -2.1445 1.9992 31 1 1.5296 -2.5969 0.4707 32 1 2.4630 -2.5819 1.9862 33 1 1.3696 -1.5498 3.8496 34 1 2.5124 -1.4122 5.2072 35 1 1.7234 0.0447 4.5569 36 1 4.5320 -1.3713 5.4780 37 1 5.7867 -1.4607 4.2310 38 1 6.3261 0.9831 5.2178 39 1 7.0347 -0.5164 5.8736 40 1 6.1572 0.5667 7.7970 41 1 4.9120 -0.6240 7.3783 42 1 4.9126 2.2762 6.6477 43 1 3.9789 1.5192 7.9512 44 1 2.4289 1.6661 6.1573 45 1 3.0033 -0.0202 6.0717 46 1 4.5806 2.0321 4.6121 47 1 2.9816 1.6425 3.9570 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155805258.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:46 Heat of formation + Delta-G solvation = -24.188644 kcal Electronic energy + Delta-G solvation = -24275.869850 eV Core-core repulsion = 21072.986837 eV Total energy + Delta-G solvation = -3202.883013 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.26471 -38.51357 -35.49670 -34.74312 -32.68475 -32.27100 -30.91476 -29.39182 -26.78943 -26.13506 -25.22721 -24.93774 -23.47881 -20.80659 -20.54639 -19.48910 -18.09499 -17.25345 -16.69923 -15.98962 -15.52655 -15.26122 -14.74845 -14.69104 -13.97942 -13.82489 -13.51430 -13.35835 -13.03402 -12.85979 -12.56261 -12.36299 -12.30085 -12.23157 -12.03831 -11.88827 -11.65212 -11.45321 -11.27674 -11.09828 -11.01851 -10.70579 -10.66371 -10.64200 -10.45410 -10.36728 -10.17542 -9.74062 -9.22000 -8.81171 -8.58548 -7.92928 -7.59037 -6.13197 -4.15091 3.32459 3.38448 3.41970 3.48216 3.67020 4.19703 4.42032 4.56531 4.65315 4.86328 5.02105 5.08704 5.12102 5.20949 5.24110 5.28802 5.38954 5.42144 5.56030 5.59107 5.72472 5.74823 5.82279 5.89414 5.92735 5.94958 5.99257 6.03728 6.05619 6.09409 6.19899 6.26892 6.31033 6.39137 6.42308 6.48720 6.61515 6.96605 7.07293 7.24249 7.36815 7.54955 7.69192 8.21851 8.55637 8.87852 9.07098 9.49786 10.98844 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026186 B = 0.004648 C = 0.004499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.013218 B = 6023.242900 C = 6222.076644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.224 3.776 3 H 0.064 0.936 4 C -0.524 4.524 5 H 0.078 0.922 6 C 0.079 3.921 7 N -0.894 5.894 8 Si 0.875 3.125 9 H -0.272 1.272 10 H -0.288 1.288 11 H -0.262 1.262 12 N -0.589 5.589 13 C 0.082 3.918 14 C 0.514 3.486 15 O -0.540 6.540 16 C 0.068 3.932 17 H 0.099 0.901 18 C -0.181 4.181 19 N -0.527 5.527 20 C 0.064 3.936 21 C -0.121 4.121 22 C -0.118 4.118 23 C -0.119 4.119 24 C -0.160 4.160 25 C 0.062 3.938 26 H 0.054 0.946 27 H 0.049 0.951 28 H 0.024 0.976 29 H 0.266 0.734 30 H 0.042 0.958 31 H 0.081 0.919 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.032 0.968 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.057 0.943 41 H 0.056 0.944 42 H 0.060 0.940 43 H 0.054 0.946 44 H 0.064 0.936 45 H 0.074 0.926 46 H 0.069 0.931 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.022 -1.451 20.418 20.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.123 3.877 3 H 0.082 0.918 4 C -0.562 4.562 5 H 0.096 0.904 6 C -0.124 4.124 7 N -0.531 5.531 8 Si 0.702 3.298 9 H -0.198 1.198 10 H -0.214 1.214 11 H -0.187 1.187 12 N -0.321 5.321 13 C -0.062 4.062 14 C 0.300 3.700 15 O -0.418 6.418 16 C -0.044 4.044 17 H 0.116 0.884 18 C -0.239 4.239 19 N -0.251 5.251 20 C -0.063 4.063 21 C -0.158 4.158 22 C -0.156 4.156 23 C -0.156 4.156 24 C -0.199 4.199 25 C -0.065 4.065 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.044 0.956 29 H 0.075 0.925 30 H 0.061 0.939 31 H 0.099 0.901 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.050 0.950 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.088 0.912 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.072 0.928 44 H 0.083 0.917 45 H 0.093 0.907 46 H 0.087 0.913 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.539 -0.652 19.746 19.817 hybrid contribution -0.554 0.453 0.452 0.846 sum 0.986 -0.199 20.198 20.223 Atomic orbital electron populations 1.22228 0.98560 1.00768 0.98955 1.19272 0.90534 0.94999 0.82862 0.91805 1.21128 1.44749 0.95911 0.94424 0.90448 1.24938 0.93709 0.98432 0.95349 1.69887 1.44771 1.36110 1.02294 0.86889 0.79760 0.86159 0.77025 1.19785 1.21396 1.18651 1.48230 1.49418 1.11540 1.22948 1.21671 0.98646 0.83427 1.02410 1.20215 0.78720 0.87171 0.83896 1.90597 1.57548 1.17180 1.76472 1.21587 0.91811 0.97340 0.93711 0.88365 1.22623 0.99032 1.02961 0.99322 1.61571 1.22179 1.07102 1.34250 1.21779 0.95151 0.95162 0.94230 1.21418 0.97870 1.01609 0.94936 1.20588 0.98235 0.99251 0.97486 1.20574 0.96712 0.99121 0.99197 1.22367 0.98118 1.02631 0.96793 1.21891 1.00293 0.91975 0.92368 0.92746 0.93234 0.95650 0.92461 0.93939 0.90061 0.92614 0.91392 0.91884 0.91431 0.94964 0.91242 0.90469 0.91246 0.92414 0.92516 0.92091 0.92759 0.91721 0.90728 0.91269 0.89674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.10 9.01 37.15 0.33 -2.76 16 2 C 0.22 5.43 2.19 -69.08 -0.15 5.27 16 3 H 0.06 1.71 4.15 -51.93 -0.22 1.50 16 4 C -0.52 -14.48 8.73 -34.44 -0.30 -14.78 16 5 H 0.08 2.25 6.83 -52.48 -0.36 1.90 16 6 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 7 N -0.89 -27.07 13.96 55.43 0.77 -26.30 16 8 Si 0.87 22.41 26.73 -169.99 -4.54 17.87 16 9 H -0.27 -7.18 7.11 56.52 0.40 -6.78 16 10 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 11 H -0.26 -6.46 6.28 56.52 0.36 -6.11 16 12 N -0.59 -12.22 2.75 -175.26 -0.48 -12.70 16 13 C 0.08 1.34 8.37 59.85 0.50 1.84 16 14 C 0.51 10.48 6.69 -10.98 -0.07 10.40 16 15 O -0.54 -13.06 13.80 5.56 0.08 -12.99 16 16 C 0.07 1.03 1.87 -68.86 -0.13 0.90 16 17 H 0.10 1.40 6.46 -51.93 -0.34 1.07 16 18 C -0.18 -2.20 7.36 37.16 0.27 -1.93 16 19 N -0.53 -7.86 4.40 -229.30 -1.01 -8.87 16 20 C 0.06 0.74 4.82 -4.49 -0.02 0.72 16 21 C -0.12 -1.22 5.63 -27.32 -0.15 -1.37 16 22 C -0.12 -1.05 5.30 -29.42 -0.16 -1.20 16 23 C -0.12 -1.12 5.30 -29.41 -0.16 -1.28 16 24 C -0.16 -1.76 4.25 -27.32 -0.12 -1.87 16 25 C 0.06 0.88 4.12 -4.49 -0.02 0.86 16 26 H 0.05 1.17 7.44 -51.93 -0.39 0.78 16 27 H 0.05 0.97 7.85 -51.93 -0.41 0.57 16 28 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 30 H 0.04 0.59 7.33 -51.93 -0.38 0.20 16 31 H 0.08 1.45 6.57 -51.93 -0.34 1.11 16 32 H 0.06 0.76 6.09 -51.93 -0.32 0.45 16 33 H 0.07 0.78 6.16 -51.93 -0.32 0.46 16 34 H 0.06 0.65 5.65 -51.93 -0.29 0.36 16 35 H 0.07 0.87 5.81 -51.93 -0.30 0.57 16 36 H 0.03 0.34 5.37 -51.93 -0.28 0.06 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.08 0.89 7.08 -51.93 -0.37 0.53 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.49 7.52 -51.93 -0.39 0.10 16 42 H 0.06 0.60 7.52 -51.93 -0.39 0.21 16 43 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.07 0.80 4.05 -51.93 -0.21 0.59 16 46 H 0.07 1.00 6.59 -51.93 -0.34 0.66 16 47 H 0.08 1.45 5.54 -51.93 -0.29 1.16 16 LS Contribution 332.38 15.07 5.01 5.01 Total: -1.00 -32.11 332.38 -8.08 -40.19 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -7.64 Total: 0.79 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: -0.26 Total: -3.00 kcal Atomic # 7 Polarization: -47.15 SS G_CDS: -0.72 Total: -47.87 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: 0.08 Total: -12.99 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -4.54 Total: 17.87 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.11 -8.08 -40.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155805258.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.998 kcal (2) G-P(sol) polarization free energy of solvation -32.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds