Wall clock time and date at job start Tue Mar 31 2020 05:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46933 * 2 1 4 4 C 1.53001 * 109.46958 * 240.00272 * 2 1 3 5 5 C 1.50706 * 109.47059 * 64.99764 * 4 2 1 6 6 O 1.21282 * 120.00087 * 0.02562 * 5 4 2 7 7 N 1.34776 * 119.99436 * 179.97438 * 5 4 2 8 8 C 1.46498 * 120.00303 * 0.02562 * 7 5 4 9 9 C 1.46506 * 119.99384 * 180.02562 * 7 5 4 10 10 H 1.09000 * 109.47212 * 0.02562 * 9 7 5 11 11 C 1.53002 * 109.47035 * 120.00492 * 9 7 5 12 12 C 1.50701 * 109.46956 * 240.00306 * 9 7 5 13 13 H 1.08001 * 120.00213 * 359.97438 * 12 9 7 14 14 C 1.37880 * 119.99755 * 180.02562 * 12 9 7 15 15 N 1.31508 * 119.99915 * 359.97438 * 14 12 9 16 16 Si 1.86800 * 119.99825 * 179.97438 * 14 12 9 17 17 H 1.48503 * 109.47088 * 60.00147 * 16 14 12 18 18 H 1.48496 * 109.47117 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47600 * 300.00319 * 16 14 12 20 20 C 1.52996 * 109.47043 * 120.00335 * 2 1 3 21 21 H 1.08989 * 109.50529 * 60.07803 * 20 2 1 22 22 C 1.53122 * 109.50353 * 299.99604 * 20 2 1 23 23 C 1.53121 * 109.16074 * 182.40373 * 22 20 2 24 24 C 1.53036 * 109.27530 * 57.66093 * 23 22 20 25 25 N 1.46847 * 109.52331 * 300.81689 * 24 23 22 26 26 C 1.46853 * 111.19805 * 61.74214 * 25 24 23 27 27 H 1.08996 * 109.47000 * 300.00178 * 1 2 3 28 28 H 1.09001 * 109.47321 * 59.99747 * 1 2 3 29 29 H 1.08996 * 109.47148 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47054 * 304.99862 * 4 2 1 31 31 H 1.08995 * 109.46867 * 184.99928 * 4 2 1 32 32 H 1.08996 * 109.46845 * 269.99320 * 8 7 5 33 33 H 1.08995 * 109.46810 * 29.99980 * 8 7 5 34 34 H 1.09005 * 109.46841 * 149.99772 * 8 7 5 35 35 H 1.08992 * 109.47060 * 179.97438 * 11 9 7 36 36 H 1.09004 * 109.46930 * 299.99770 * 11 9 7 37 37 H 1.09004 * 109.47059 * 59.99372 * 11 9 7 38 38 H 0.97003 * 119.99339 * 179.97438 * 15 14 12 39 39 H 1.08998 * 109.52257 * 302.31698 * 22 20 2 40 40 H 1.08999 * 109.51883 * 62.50084 * 22 20 2 41 41 H 1.09000 * 109.49958 * 177.59101 * 23 22 20 42 42 H 1.08995 * 109.50606 * 297.67857 * 23 22 20 43 43 H 1.09001 * 109.46573 * 60.83263 * 24 23 22 44 44 H 1.08996 * 109.46385 * 180.80679 * 24 23 22 45 45 H 1.00898 * 111.00363 * 185.83896 * 25 24 23 46 46 H 1.09001 * 109.46365 * 178.24412 * 26 25 24 47 47 H 1.09003 * 109.45543 * 58.27824 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6412 0.0572 -2.4766 6 8 1.0116 1.0875 -2.3632 7 7 1.9852 -0.3913 -3.7001 8 6 2.7462 -1.6356 -3.8370 9 6 1.5981 0.3657 -4.8932 10 1 1.0428 1.2550 -4.5950 11 6 2.8533 0.7828 -5.6622 12 6 0.7316 -0.4958 -5.7754 13 1 0.4935 -1.5062 -5.4774 14 6 0.2437 0.0057 -6.9635 15 7 0.5340 1.2359 -7.3266 16 14 -0.8298 -1.0623 -8.0573 17 1 -2.0484 -1.4672 -7.3115 18 1 -1.2223 -0.2950 -9.2666 19 1 -0.0726 -2.2736 -8.4632 20 6 2.0400 -0.7213 1.2492 21 1 1.6781 -1.7494 1.2490 22 6 1.5301 -0.0001 2.4999 23 6 2.0937 -0.6922 3.7441 24 6 3.6225 -0.6891 3.6750 25 7 4.0603 -1.3911 2.4617 26 6 3.5703 -0.7174 1.2524 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.6054 -1.7197 -1.2952 31 1 3.1262 -0.7994 -1.2056 32 1 3.8130 -1.4128 -3.8190 33 1 2.5006 -2.3043 -3.0121 34 1 2.4912 -2.1153 -4.7820 35 1 2.5653 1.3455 -6.5500 36 1 3.4800 1.4058 -5.0241 37 1 3.4090 -0.1064 -5.9604 38 1 0.1910 1.5885 -8.1626 39 1 1.8587 1.0390 2.4807 40 1 0.4410 -0.0382 2.5238 41 1 1.7688 -0.1574 4.6366 42 1 1.7327 -1.7199 3.7839 43 1 3.9829 0.3393 3.6495 44 1 4.0267 -1.1938 4.5524 45 1 5.0646 -1.4857 2.4412 46 1 3.9367 -1.2427 0.3703 47 1 3.9310 0.3111 1.2383 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157066508.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:13 Heat of formation + Delta-G solvation = -56.838828 kcal Electronic energy + Delta-G solvation = -23363.749064 eV Core-core repulsion = 20159.450233 eV Total energy + Delta-G solvation = -3204.298832 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.70600 -38.58944 -35.64105 -34.64638 -32.84028 -31.96888 -30.03529 -29.21560 -27.36882 -25.96701 -25.19338 -24.05214 -23.18006 -21.43557 -20.10652 -19.60537 -18.11786 -16.98946 -16.41429 -15.88252 -15.45003 -15.08570 -14.63253 -14.41111 -14.26810 -14.03045 -13.63314 -13.43344 -13.28332 -12.90413 -12.46175 -12.36418 -12.26662 -11.89163 -11.61608 -11.50159 -11.40532 -11.19619 -11.13130 -11.00524 -10.86374 -10.74883 -10.66240 -10.39833 -10.30286 -10.18444 -10.13976 -10.02983 -9.16106 -8.75074 -8.64489 -8.39546 -7.51984 -6.05422 -4.13412 3.28645 3.33822 3.35169 3.48721 3.97785 4.06165 4.41242 4.63504 4.73537 4.80440 4.96539 5.12937 5.23021 5.24812 5.25648 5.41843 5.47003 5.48766 5.59806 5.62600 5.73523 5.79763 5.84881 5.93213 5.94678 5.95879 6.02748 6.07990 6.14158 6.27221 6.33309 6.40772 6.61650 6.76760 6.79143 6.85149 6.86570 7.10107 7.17455 7.48152 7.57695 7.74893 8.04925 8.23423 8.60400 8.86304 9.14849 9.53271 10.99800 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032929 B = 0.003507 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.112818 B = 7982.023699 C = 8212.816148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.067 4.067 3 H 0.074 0.926 4 C -0.137 4.137 5 C 0.502 3.498 6 O -0.552 6.552 7 N -0.595 5.595 8 C 0.084 3.916 9 C 0.258 3.742 10 H 0.062 0.938 11 C -0.146 4.146 12 C -0.526 4.526 13 H 0.058 0.942 14 C 0.064 3.936 15 N -0.888 5.888 16 Si 0.898 3.102 17 H -0.277 1.277 18 H -0.286 1.286 19 H -0.277 1.277 20 C -0.079 4.079 21 H 0.077 0.923 22 C -0.118 4.118 23 C -0.118 4.118 24 C 0.057 3.943 25 N -0.691 5.691 26 C 0.058 3.942 27 H 0.049 0.951 28 H 0.080 0.920 29 H 0.045 0.955 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.041 0.959 33 H 0.053 0.947 34 H 0.079 0.921 35 H 0.092 0.908 36 H 0.010 0.990 37 H 0.028 0.972 38 H 0.263 0.737 39 H 0.058 0.942 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.069 0.931 43 H 0.028 0.972 44 H 0.070 0.930 45 H 0.340 0.660 46 H 0.078 0.922 47 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.759 -5.530 18.053 20.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.086 4.086 3 H 0.093 0.907 4 C -0.177 4.177 5 C 0.290 3.710 6 O -0.431 6.431 7 N -0.327 5.327 8 C -0.060 4.060 9 C 0.157 3.843 10 H 0.080 0.920 11 C -0.204 4.204 12 C -0.565 4.565 13 H 0.077 0.923 14 C -0.138 4.138 15 N -0.526 5.526 16 Si 0.726 3.274 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.202 1.202 20 C -0.097 4.097 21 H 0.096 0.904 22 C -0.155 4.155 23 C -0.156 4.156 24 C -0.072 4.072 25 N -0.322 5.322 26 C -0.071 4.071 27 H 0.068 0.932 28 H 0.099 0.901 29 H 0.064 0.936 30 H 0.105 0.895 31 H 0.102 0.898 32 H 0.059 0.941 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.111 0.889 36 H 0.029 0.971 37 H 0.048 0.952 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.046 0.954 44 H 0.088 0.912 45 H 0.158 0.842 46 H 0.096 0.904 47 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 5.882 -5.299 17.941 19.610 hybrid contribution 0.163 0.066 -0.770 0.790 sum 6.045 -5.233 17.171 18.941 Atomic orbital electron populations 1.21968 0.94586 1.01283 1.03065 1.20864 0.96691 0.99430 0.91651 0.90716 1.21830 1.02006 1.00264 0.93632 1.20454 0.80023 0.85913 0.84648 1.90600 1.40931 1.25282 1.86313 1.48255 1.53352 1.23859 1.07201 1.21580 0.94782 0.86882 1.02751 1.18896 0.92714 0.92603 0.80045 0.91972 1.22079 0.97096 0.99296 1.01959 1.21301 1.30931 0.99776 1.04452 0.92346 1.24894 0.96190 0.95101 0.97598 1.69873 1.44887 1.14637 1.23252 0.86563 0.80860 0.80227 0.79775 1.20243 1.21188 1.20247 1.21232 0.94027 1.00234 0.94252 0.90447 1.21675 1.00794 0.99063 0.93977 1.21592 0.94684 1.01447 0.97841 1.21917 0.96333 0.96184 0.92803 1.60274 1.16663 1.53243 1.02027 1.22088 0.95852 0.96686 0.92470 0.93189 0.90105 0.93599 0.89542 0.89758 0.94085 0.92782 0.90258 0.88927 0.97133 0.95248 0.92664 0.92318 0.91287 0.91878 0.91254 0.95424 0.91167 0.84207 0.90403 0.95155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 8.58 37.16 0.32 -1.90 16 2 C -0.07 -0.92 1.62 -90.62 -0.15 -1.06 16 3 H 0.07 1.15 7.95 -51.93 -0.41 0.73 16 4 C -0.14 -2.01 3.52 -27.88 -0.10 -2.10 16 5 C 0.50 10.23 7.39 -10.98 -0.08 10.15 16 6 O -0.55 -13.28 13.29 5.56 0.07 -13.20 16 7 N -0.60 -12.72 2.75 -175.26 -0.48 -13.20 16 8 C 0.08 1.42 9.24 59.85 0.55 1.97 16 9 C 0.26 6.64 2.64 -69.08 -0.18 6.46 16 10 H 0.06 1.86 6.90 -51.93 -0.36 1.50 16 11 C -0.15 -3.54 8.97 37.16 0.33 -3.20 16 12 C -0.53 -14.31 7.99 -34.44 -0.28 -14.58 16 13 H 0.06 1.56 7.33 -52.49 -0.38 1.17 16 14 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 15 N -0.89 -25.35 11.32 55.43 0.63 -24.72 16 16 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 18 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 20 C -0.08 -0.87 1.94 -90.54 -0.18 -1.05 16 21 H 0.08 0.90 8.14 -51.94 -0.42 0.48 16 22 C -0.12 -1.20 4.86 -26.61 -0.13 -1.33 16 23 C -0.12 -1.05 6.09 -26.65 -0.16 -1.21 16 24 C 0.06 0.49 6.55 -3.83 -0.03 0.46 16 25 N -0.69 -6.46 6.85 -113.81 -0.78 -7.23 16 26 C 0.06 0.60 5.47 -3.83 -0.02 0.58 16 27 H 0.05 0.64 6.49 -51.93 -0.34 0.31 16 28 H 0.08 1.48 5.95 -51.93 -0.31 1.17 16 29 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.09 1.17 7.40 -51.93 -0.38 0.78 16 31 H 0.08 1.07 6.17 -51.93 -0.32 0.75 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.74 6.44 -51.93 -0.33 0.41 16 34 H 0.08 1.43 7.02 -51.93 -0.36 1.07 16 35 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 36 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 37 H 0.03 0.65 7.67 -51.93 -0.40 0.26 16 38 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.70 6.57 -51.93 -0.34 0.36 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 44 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.34 2.62 8.90 -39.29 -0.35 2.27 16 46 H 0.08 0.79 6.37 -51.93 -0.33 0.45 16 47 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 352.19 15.07 5.31 5.31 Total: -1.00 -30.53 352.19 -8.76 -39.29 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -8.30 Total: 2.78 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: -0.19 Total: -5.14 kcal Atomic # 7 Polarization: -44.53 SS G_CDS: -0.63 Total: -45.16 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: 0.07 Total: -13.20 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.53 -8.76 -39.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157066508.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.548 kcal (2) G-P(sol) polarization free energy of solvation -30.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds